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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0368500 |
| Transcript ID | LotjaGi3g1v0368500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT1G52155.1 transmembrane protein; Swiss-Prot: sp|A6ZZS6|PTM1_YEAS7 Membrane protein PTM1; TrEMBL-Plants: tr|A0A0R0IZ89|A0A0R0IZ89_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0368500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75492595..75496257) extracted from Lotus japonicus Gifu genome v1.2.
CGGCAGCGAAATGGTGAACTCCGGCGACGGAGTAGACGAGTCGTACCGAGCACTTCCGTCGCTCTACTTGACCTTCTTGT CGATCTGGTTCCTCTCCGCTTGCTCCTGGACCGCCTACACCTACAAAACCCGCCATTTTCAGGTTCCTTCTTAATCTTCT TCCTCACTCTCCGCTTTGTCAATCGTTGAGCGTTGTTTTCGATTTTTGGATGATAAGAAATGAACGAGTGACTTGTGTAA TCGTGTTGCTGAAATGAAATGTAACTGTGTTGTTGAGAACTGTTTTTGCAAGCTTTGGACTTAACTATTTCGTTATTCGA GTTTGATTTGTTGATTTTATTCAATATGCAATAACGTGAGAAAATGAAATTTCATTGCCTTTTACATGTAATTTGCAACT GTTTCAGTAAAACTATGGAGAATTAGTTTTAGATCAAATATGTAAAGTTAATTGAAAGCTTTTTTTTGAAGTTTTTTTGT TTAATTGATTTATTTTGTGGTATTGTTTTGCTAGAGCAGTGGAATAATTTGCAGTGGGCACTTACGGTGGTTCCGTTGAT TAAAGCATTGCAGCTCATGCTATCCTTCCTCTTCTGGTAGGTATTGGACTTCTTTTTTGGCTTGTTGAATGCTGTAATGG ATTTCTAGAGTTGAAGGTGAAGATATGTATTTGGATTTTTATATTTATATAACTTTAAGATGGGATTATCTTTCGGTCAG TTCAACAACGAAGAGTAGGTAACTCGTGTCTCAATTCATAGTTCAGGAGACAAAATTAAGTGTATAATTGGAGGCAAAGA AGGAGATCCCAAATTAAGTACATTCCAGCCAATTGAGAATCATAGCTTTTCTTTTTTCAAACATTTTATACCTCTCAACT TAACAAAAAAAGAAAAGAGTACCCTCCACGTAGCTAAAGTCTTTCTACTTAGATGTTCATCCCTCCGTACTTTTCACTCA TATCTTGGTTCTTACTTCGGATTCTTGAAAGTTGAGAAAATATACAACAGCAGTGTAATTTTCGGAATACTTGTATGGAT ATAAGGGCGTGGAAGTAGACAACTTTATTTGTTGAAAGCAAGACTATAGAGTAATTGTAAGTTGTAACCGATGGATGGAA GATACTGGTGGGAAAGGCCAGACAATTGTGGTAAAATTGAGATGTAATAGATGAGGGTGTGCTACCCTTCTAATTTGCAA TTCTGCATTTGAACTTACAAGTTGTTCAATTTATCTGGAAAAAAAAAACGTGTGGATTCATCCATGAGGACTGTAATTGA TAGGGATATGGGACATTGCTCAAATTATTAAGTTGAATTTTGAAGTTTATTTGTAGAGTTGCGGTTTGTATCAGAGAATC CATTACATTATAGTGCAGTTTATTTTTAAAGTGGTAGTATATGAGGGCTGTTGTCATGGTTGCTCTAGATGTGTAAATGT TAGTTTGCAAATGATTCCAGGTGCATGTTTAGCGTGAGATTACACAAGGCTTGGCATGCTTGAAACTTGCTTGACAACAC ATCCTTGCAGCGTCAACTTTGTGTAACTGTATTTGTGGTCTGCAAAATTTACTTCATTCAGTCTTGTGACACCATTCTTG TAGGTATTCTTGCTTCAACTATCAGACATGCTCTTTGTGGATGTCATTTGGGGTGTATGTAACAGGGGTGCTATTTCAGA CAGCAGCTTTTGTCTCCTTTTTGCTCATTTCTCATGGTTACTGCATCATGTGTGAGCGTCTTTCTTTAAGTGAACGCCGT TCCACTGCCGCACTTGCATGTGTCTTTTACTTGACTCTAGTTGGGTACAAGGCTTCTGTGCCATACTTCACCGTAAGTTT CTTAGCTGGTCCATATAATATGCAGATTAATTGGTAATACTACAAATAAATATACATGGTTCTTTGATGCTAATTCGTAA TTGACCAAATGTGCAGGTGCTTCTACTCCTAAATTATGTTATATCATTCTATATAATATTCCACCATATATCTCAAAACC TGCTAGTGTTGCGAGAACAATTGAGCATTATAGTAAATGACGATGTTCAAGCAATGCATGATGCCGTGTATAAGAAGTAC ATAATGTTCAAGTAAGTGCAACACATCTGGGAAGTGTATATGTGTAATTTCTTCCCCAATTTCGTAGACATGTGTTATTT CCATGTAAACAATAACTCATACTCAACCGCTAACATTCTTTGCTTTACTCTGTCCAGGAAATTTCAGGGAGCAATGCAGA TGGTTGCTATGGCAGAAACTATGGTATTATATTTGAGTTTTGCTTTGTAAATTTTCATGAACAATGATATATAAATATTT GACTTTGACAAGCCCATTGTAGATATATATGAACATGGATGACTCCTCACAGAATTACTGGCTTCGCTTATTGATCAGAG AATGGGTACAATTCTGCATATTTGGGTATATTGGGTATGCATATCTGCGCTCCCCTGCCAGAACACTTGAATTCTCTAAA ATTAATAGAATTCCTTGACAGAAAACCACGCAATGGAAGAAAACTATTCATGATTTTCCTCCAATTGTTTGTCCCTTTCA TTTCTAACCTCAAATATTTCTTAATCTATTCCTTGCTGCAGATGGATTTTCAGATCACAAGATTTGGCACCACACTTCTC TGTTATGCCAACCACAAAGTGTAAAGGCGAGACTCTGGTGCCTCCCATCTACAGCCTTGTAAGTTATCGATCTTTATATG TTGCAGAGGTCACGATGCTAATAAAATCTTTAATTTTAGTTGTCATGAGTTGTTGGAATGTTTTCAACAATATTGAACTC TAAACATTCAGTTATACTCGAAGATATCAGCTGTACGTAGCCTCTTTTAGGTTGGAGCTTCTACTTGTTTCTCTATTATG TCACACATTTTGAAAGACGAGAGATCTCAATTTGCAACTTTTTAGCTACTCTCATATATAAGTTTAGACTATTAGGGTTC ATTCCCATATTCAAGGCAGTAATTGAAGAATTACTCTAGATGTAGTTCATAGAATAATATCCTGTTTTCTGACTACACTG AGCACCTTGGTGCAGGAAATGGACGCATCAACGTTTAAAGAATTTAGCAGTCATGAATGGCACATTGGGGTGGTAAGTGT TATAAACCTGCTTCCATGTTTTTAGTTGGATAGCTTACTAACTAAATAGTGGTATCACGTTACATTCTTAAAATATCATT CCAAGCAATGAATCCTCTACTAGGTCAAGTTTGCTTTATTTGAACGCATGAGCTTTTGGTGACTTTTGTTACTTCCTGCG AGTTTAATAACCATAAGATAGTGAGATATGATTAGATGTATTTTACTGTCAGTGTATACTAACTAAATTCATTCACTATT TATTATTTTGTACTGATACAATACAATCATTATGCAGTAATTCAAACAATTTTAAATCAAATTTTTATTTATTTGTACTT ATACACTCATTATGAAGTTCAAATAATTCAAGTTATCTGATCTCATTTTTCTGTCTGTGTAGCCAACTTGTACTTTTCAT GATGAAAGTTCCAAAAAAGATGTTCTTGTTATCATTCAGCATCCTCGAGCACAAAGGCTAAGAAAGCTCGATGCCTTCTC TCAAAGCGCTAACTGTTTGTAGTGTCAGATCTCAATACACATTCATCTTCATGCCAAATGTAA
CDS sequence (LotjaGi3g1v0368500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTATCCTTCCTCTTCTGGTATTCTTGCTTCAACTATCAGACATGCTCTTTGTGGATGTCATTTGGGGTGTATGTAAC AGGGGTGCTATTTCAGACAGCAGCTTTTGTCTCCTTTTTGCTCATTTCTCATGGTTACTGCATCATGTGTGAGCGTCTTT CTTTAAGTGAACGCCGTTCCACTGCCGCACTTGCATGTGTCTTTTACTTGACTCTAGTTGGGTACAAGGCTTCTGTGCCA TACTTCACCGTGCTTCTACTCCTAAATTATGTTATATCATTCTATATAATATTCCACCATATATCTCAAAACCTGCTAGT GTTGCGAGAACAATTGAGCATTATAGTAAATGACGATGTTCAAGCAATGCATGATGCCGTGTATAAGAAGTACATAATGT TCAAGAAATTTCAGGGAGCAATGCAGATGGTTGCTATGGCAGAAACTATGATATATATGAACATGGATGACTCCTCACAG AATTACTGGCTTCGCTTATTGATCAGAGAATGGGTACAATTCTGCATATTTGGGTATATTGGATGGATTTTCAGATCACA AGATTTGGCACCACACTTCTCTGTTATGCCAACCACAAAGTGTAAAGGCGAGACTCTGGTGCCTCCCATCTACAGCCTTG AAATGGACGCATCAACGTTTAAAGAATTTAGCAGTCATGAATGGCACATTGGGGTGCCAACTTGTACTTTTCATGATGAA AGTTCCAAAAAAGATGTTCTTGTTATCATTCAGCATCCTCGAGCACAAAGGCTAAGAAAGCTCGATGCCTTCTCTCAAAG CGCTAACTGTTTGTAG
Protein sequence (LotjaGi3g1v0368500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSFLFWYSCFNYQTCSLWMSFGVYVTGVLFQTAAFVSFLLISHGYCIMCERLSLSERRSTAALACVFYLTLVGYKASVP YFTVLLLLNYVISFYIIFHHISQNLLVLREQLSIIVNDDVQAMHDAVYKKYIMFKKFQGAMQMVAMAETMIYMNMDDSSQ NYWLRLLIREWVQFCIFGYIGWIFRSQDLAPHFSVMPTTKCKGETLVPPIYSLEMDASTFKEFSSHEWHIGVPTCTFHDE SSKKDVLVIIQHPRAQRLRKLDAFSQSANCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 2 | 267 | 266 | 3.1E-126 | – | |
| Phobius | 20 | 47 | 28 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 48 | 58 | 11 | - | – | |
| Phobius | 59 | 75 | 17 | - | – | |
| Phobius | 76 | 80 | 5 | - | – | |
| TMHMM | 77 | 99 | 23 | - | – | |
| Phobius | 81 | 101 | 21 | - | – | |
| Phobius | 102 | 161 | 60 | - | – | |
| Phobius | 162 | 184 | 23 | - | – | |
| Phobius | 185 | 271 | 87 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0368500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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