Transcript — View — Lotus Base

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LotjaGi3g1v0435700.3

Overview

Field	Value
Gene ID	LotjaGi3g1v0435700
Transcript ID	LotjaGi3g1v0435700.3
Related isoforms 2	LotjaGi3g1v0435700.1 LotjaGi3g1v0435700.2
Lotus japonicus genome version	Gifu v1.2
Description	Arginase; TAIR: AT4G08900.1 arginase; Swiss-Prot: sp\|P46637\|ARGI1_ARATH Arginase 1, mitochondrial; TrEMBL-Plants: tr\|I3SK83\|I3SK83_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0435700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:84697188..84700210) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCGATCATAGCGCGCAGAGGCATCCATTACATGCATAAGCTGAATGCACCAAATGTATCTTCTGCTATGCTAGAGAA AGGCCAAAACCGTGTGATTGATGCTTCGCTTACTCTTATAAGAGAAAGGGCAAAGCTTAAGGTATGTCATATATTGCTTT CATCCTGTTTTGACTGAATTCCTGTTTAATTAGTGCCCTTAATTTTATATTTTATTTGGATTATTTGGATTATAAGCTTT GGTTGAAATCAATAGAAATGCTGAGAGTTCTTTTCTACAGGGTGAACTCGTGCGTGCTTTGGGAGGTGCTGCGGCTACTT CATCTCTTCTGGGAGTTCCATTGGGACATAATTCTTCATTCCTTCAAGGGCCTGCATTTGCACCTCCTCGCATTAGGGAG GCCATTTGGTGTGGTAGCACAAACTCAACAACTGAAGAAGGTACTCACATGGTTAAATTTCTGTTTGTGAACTCATCTGC TGATGATGATTTATTCTTTGCATCTTATAAGTAGAAAGATTCAAGAATACAAACCTCTTATCAAAGATTAACTTCGAAAT TGTGGACATTAATTCTTTGGTTGTATTTACTGTGAGGATAACATGGACATCTGTTGGAATCTTACTTCTAAATGCCTCCA TGCTTTTAGTTCTAATGGACATGTAATTATCTGTGAGAATCATGATCTTATAGCATGGTTCTAATTTTGCAGGCAAAGAT TTACATGATGCACGGGTGCTAACTGATGTTGGTGATGTCCCTATCCAAGAAATTCGAGATTGTGGGGTAGATGATCACAG ATTGATGAATGTCATTGGTGAAGCTGTCAAGATTGTGATGGAGGAGGTAAATTGTCCATATGTCAGCTTTTGCTTTCAAG TTTCAAGTCTGCCACATTACTTAGAATGAAAAAATTACATTTCCTACAACACACAGTATATGTCATTTTTTACAATTCAA TTTGCTCCCAATAGTTCCAGTGCATTATGATTTATGTTTGATGTAGTTTTTGGAAAAACTTGAAAACGGTCTAATGTTTT ACTTGTACCATCATTATTACCTCATTTACCTGGAATTTTATTCCTACTAGTTTGAACTTTGATGGCATCTCCCCCCCCCC CCCCGTAAGCGATATTTTCTAGAGATTCATTTTTCCCCATTTTTGTTTGTTTATCTGTTTTTAGTGTTGGAAATTTGTAA TGAATCAAATGGTAAAACCGTAAAAGGGAATCATAGTTGAGATCATTGACACTCCTTCTCTGCATGCTACTGATTTCACT ACTTGCGGTCATTTGCAGTATGAATACAGAAGTAAATGGCCGAGCACTATTAGCTTAGACTTTAACATAAGATTAACATT CAATGTTCATTTTAAAAAACAATTTTCATCAAGGAAAAAATTGTCAGTTGATATATTAGTCCCAGAAAATTGCTTTTGCT CGAGTCTTTTAACAGATCTAGATTCATATGTACTCAATCCTGATTAATCAGTTAAACTAATTAATAGCAATTATATTTTG AAAAGAATTGTGGCTTCTTGGTTATATGTCTGAACATGAGTAGGGAAGGAACCATATGTGATATGACAAGATTAAGTGTT TGATGGTCTGGGTATTTCATTCTTTATTTGTTTCTCCTAAAGCTTTACATACATTGGAGAGTGTTGTTTATAGAAATAAC AAGTTTTTTTAGCATCAAATCTACTGTCGCTTGATTATCATGCTTTTTCTTATAACTTTGTGTTTGAACTTGATATAGCT TGATTCACATGATTTGTATATCCTTCCAGGATCCACTGCGTCCCTTAGTTTTAGGTGGTGACCACTCAATATCATTTCCA GTTATTAGAGCTGTCTCTGAGAAGCTTGGAGGACCAGTTGATGTTCTTCATCTCGATGCACATCCAGATAACTATGATGC CTTCGAAGGAAACATTTATTCACATGCTTCTTCTTTTGCTCGAGTCATGGAGGGTGACTATGTTCGGCGACTCTTGCAGG TAATTTCTTATTCTTGATATGCTTGTAGCATTTATATCCTAAATAGTTCTATTTATAAATTTAGTAAGGAATTTGAGACA TAGACATACTCATTTAGTATTTATGTTCTGGCATTAATTTTTGGCTGGCTGTGCATTGGGTAGATTAGAACTGGCTTTCG TTTATATGATAAATACAACTTGATCAGGATTAAGGGCTTAATCATTAGACACTTCTGCATAAAAGTCAAACAGTAGGACA CGTGGACGATATTGTGATGTTTCTTCCACGTGGCCGTCGCTTTCAACCTTAGACATACCTCTTTGTTCATATTGTGATGT TTCTTCTTTCATAATTGGATGATCAATTATTCAATGTGAATAAAACTGTCAGTTGTATACTTGTATTCCTCATAAAACCT TTCACAATCTCTATCCGGAAGCAATTGTGTTTCGTTGAAATTCAGTTCAATTATATTGTTCAACCTGCCTATCAAAATGA TTCTTTAGGTTCTGCCAACCAATGTTTTCATCAGATAAATTTGTTGTTAGTTTTGTTTCGGTTTCTAAACTGCTGCAAGT TCTTCCCTATGGTTTACATGATATATTGCACATTCTTCATGCTTTTAATTTGTTAATCTATTTCAGGTTGGTATTAGATC AATAACAACTGAAGGGCGTGAACAAGCCAAAAAATTCGGGGTAGAGCAATATGAAATGCGCACATTTTCAAGAGATCGTC ACTTTTTAGAGAACCTGGTATCTCCACTCTCTCTCTCTCTCTCACACACACACACAGCACCTCTGTTTATGGGGGTGTGC ACGCATACATGTGCTTGTTTGTCTTTTTATTTCTTATATGACTCACACACAGACCTGCACTATTTTTCAAACCACTGTTC ATCTATCAAGTTTGGACATTCAGAAACTTAACCTCCTGAGATTGTGTCCTTATTGGTTACCTGCTTGATGCAAAGTCATA CATGCTAGAAATATAATCATTATACTAATATGATATTATTCCTTTAAGGCCTTAACCTTGTAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0435700.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGATCATAGCGCGCAGAGGCATCCATTACATGCATAAGCTGAATGCACCAAATGTATCTTCTGCTATGCTAGAGAA AGGCCAAAACCGTGTGATTGATGCTTCGCTTACTCTTATAAGAGAAAGGGCAAAGCTTAAGGGTGAACTCGTGCGTGCTT TGGGAGGTGCTGCGGCTACTTCATCTCTTCTGGGAGTTCCATTGGGACATAATTCTTCATTCCTTCAAGGGCCTGCATTT GCACCTCCTCGCATTAGGGAGGCCATTTGGTGTGGTAGCACAAACTCAACAACTGAAGAAGGCAAAGATTTACATGATGC ACGGGTGCTAACTGATGTTGGTGATGTCCCTATCCAAGAAATTCGAGATTGTGGGGTAGATGATCACAGATTGATGAATG TCATTGGTGAAGCTGTCAAGATTGTGATGGAGGAGGATCCACTGCGTCCCTTAGTTTTAGGTGGTGACCACTCAATATCA TTTCCAGTTATTAGAGCTGTCTCTGAGAAGCTTGGAGGACCAGTTGATGTTCTTCATCTCGATGCACATCCAGATAACTA TGATGCCTTCGAAGGAAACATTTATTCACATGCTTCTTCTTTTGCTCGAGTCATGGAGGGTGACTATGTTCGGCGACTCT TGCAGGTTGGTATTAGATCAATAACAACTGAAGGGCGTGAACAAGCCAAAAAATTCGGGGTAGAGCAATATGAAATGCGC ACATTTTCAAGAGATCGTCACTTTTTAGAGAACCTGGTATCTCCACTCTCTCTCTCTCTCTCACACACACACACAGCACC TCTGTTTATGGGGGCCTTAACCTTGTAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0435700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSIIARRGIHYMHKLNAPNVSSAMLEKGQNRVIDASLTLIRERAKLKGELVRALGGAAATSSLLGVPLGHNSSFLQGPAF APPRIREAIWCGSTNSTTEEGKDLHDARVLTDVGDVPIQEIRDCGVDDHRLMNVIGEAVKIVMEEDPLRPLVLGGDHSIS FPVIRAVSEKLGGPVDVLHLDAHPDNYDAFEGNIYSHASSFARVMEGDYVRRLLQVGIRSITTEGREQAKKFGVEQYEMR TFSRDRHFLENLVSPLSLSLSHTHTAPLFMGALTL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR11358 View details on PTHR11358 Search for proteins/transripts with this domain View external data on PTHR11358	1	252	252	1.8E-137	–
PANTHER	PTHR11358:SF32 View details on PTHR11358:SF32 Search for proteins/transripts with this domain View external data on PTHR11358:SF32	1	252	252	1.8E-137	–
Gene3D	G3DSA:3.40.800.10 View details on G3DSA:3.40.800.10 Search for proteins/transripts with this domain View external data on G3DSA:3.40.800.10	38	264	227	1.9E-38	–
ProSiteProfiles	PS51409 View details on PS51409 Search for proteins/transripts with this domain View external data on PS51409	52	275	224	29.469	IPR006035 Show description in modal box View details on IPR006035 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF52768 View details on SSF52768 Search for proteins/transripts with this domain View external data on SSF52768	60	245	186	1.17E-36	IPR023696 Show description in modal box View details on IPR023696 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00491 View details on PF00491 Search for proteins/transripts with this domain View external data on PF00491	62	245	184	8.2E-36	IPR006035 Show description in modal box View details on IPR006035 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0046872 View details of GO:0046872 AmiGO InterPro QuickGO	Molecular function	Metal ion binding	Interacting selectively and non-covalently with any metal ion.	Subterm of View details of GO:0043169

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0435700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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