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IPR023696 is a Ureohydrolase domain superfamily.
<p>This entry represents hydrolases that cleave carbon-nitrogen bonds other than peptide bonds ([ec:3.5.-.-]). It includes mainly members of the ureohydrolase superfamily. It also represents the histone deacetylase family ([ec:3.5.1.98]) and other related hydrolases.</p> <p>The ureohydrolase superfamily includes arginase ([ec:3.5.3.1]), agmatinase ([ec:3.5.3.11]), formimidoylglutamase (also known as formiminoglutamase; [ec:3.5.3.8]) and proclavaminate amidinohydrolase ([ec:3.5.3.22]) [[cite:PUB00028086]]. These enzymes share a 3-layer α-β-α structure [[cite:PUB00028086], [cite:PUB00028087], [cite:PUB00025337]], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways.</p> <p>Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion [[cite:PUB00001437]]. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia.</p> <p>Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals.</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: arginase-like [Cicer arietinum] gi|502146607|ref|XP_004506527.1| | 12 | ||
– | Arginase [Medicago truncatula] gi|357469765|ref|XP_003605167.1| | 8 | ||
– | PREDICTED: arginase-like [Cicer arietinum] gi|502146607|ref|XP_004506527.1| | 12 | ||
– | PREDICTED: arginase-like [Cicer arietinum] gi|502146607|ref|XP_004506527.1| | 12 | ||
– | Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 | 14 | ||
– | Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 | 14 | ||
– | Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 | 14 | ||
– | Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 | 14 | ||
– | Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|I1LWR2|I1LWR2_SOYBN Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 | 14 | ||
– | Histone deacetylase; TAIR: AT4G38130.1 histone deacetylase 1; Swiss-Prot: sp|O22446|HDA19_ARATH Histone deacetylase 19; TrEMBL-Plants: tr|A0A151RPJ3|A0A151RPJ3_CAJCA Histone deacetylase; Found in the gene: LotjaGi1g1v0146200 | 13 | ||
– | Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|G7J4T5|G7J4T5_MEDTR Histone deacetylase; Found in the gene: LotjaGi1g1v0176200 | 15 | ||
– | Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|G7J4T5|G7J4T5_MEDTR Histone deacetylase; Found in the gene: LotjaGi1g1v0176200 | 15 | ||
– | Histone deacetylase family protein; TAIR: AT1G08460.1 histone deacetylase 8; Swiss-Prot: sp|Q94EJ2|HDA8_ARATH Histone deacetylase 8; TrEMBL-Plants: tr|Q2HSH7|Q2HSH7_MEDTR Histone deacetylase superfamily; Found in the gene: LotjaGi3g1v0181900 | 11 | ||
– | Histone deacetylase family protein; TAIR: AT1G08460.1 histone deacetylase 8; Swiss-Prot: sp|Q94EJ2|HDA8_ARATH Histone deacetylase 8; TrEMBL-Plants: tr|Q2HSH7|Q2HSH7_MEDTR Histone deacetylase superfamily; Found in the gene: LotjaGi3g1v0182100_LC | 8 | ||
– | Arginase; TAIR: AT4G08900.1 arginase; Swiss-Prot: sp|P46637|ARGI1_ARATH Arginase 1, mitochondrial; TrEMBL-Plants: tr|I3SK83|I3SK83_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0435700 | 12 | ||
– | Arginase; TAIR: AT4G08900.1 arginase; Swiss-Prot: sp|P46637|ARGI1_ARATH Arginase 1, mitochondrial; TrEMBL-Plants: tr|I3SK83|I3SK83_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0435700 | 12 | ||
– | Arginase; TAIR: AT4G08900.1 arginase; Swiss-Prot: sp|P46637|ARGI1_ARATH Arginase 1, mitochondrial; TrEMBL-Plants: tr|I3SK83|I3SK83_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0435700 | 8 | ||
– | Arginase family protein; TAIR: AT4G08900.1 arginase; Swiss-Prot: sp|P46637|ARGI1_ARATH Arginase 1, mitochondrial; TrEMBL-Plants: tr|G7JFU5|G7JFU5_MEDTR Arginase family protein; Found in the gene: LotjaGi3g1v0435800 | 12 | ||
– | Arginase; TAIR: AT4G08870.1 Arginase/deacetylase superfamily protein; Swiss-Prot: sp|O49046|ARGI_SOYBN Arginase; TrEMBL-Plants: tr|A0A0B2RR74|A0A0B2RR74_GLYSO Arginase; Found in the gene: LotjaGi3g1v0435900 | 13 | ||
– | Arginase family protein; TAIR: AT4G08900.1 arginase; Swiss-Prot: sp|P46637|ARGI1_ARATH Arginase 1, mitochondrial; TrEMBL-Plants: tr|G7JFU3|G7JFU3_MEDTR Arginase family protein; Found in the gene: LotjaGi3g1v0436000 | 8 | ||
– | Arginase; TAIR: AT4G08870.1 Arginase/deacetylase superfamily protein; Swiss-Prot: sp|O49046|ARGI_SOYBN Arginase; TrEMBL-Plants: tr|I3SM21|I3SM21_MEDTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0436000 | 12 | ||
– | Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900 | 14 | ||
– | Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900 | 14 | ||
– | Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900 | 13 | ||
– | Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900 | 13 | ||
– | Histone deacetylase; TAIR: AT3G44680.1 histone deacetylase 9; Swiss-Prot: sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9; TrEMBL-Plants: tr|A0A151TNQ1|A0A151TNQ1_CAJCA Histone deacetylase; Found in the gene: LotjaGi3g1v0479900 | 13 | ||
– | Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0S3R6F7|A0A0S3R6F7_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0229800 | 15 | ||
– | Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0S3R6F7|A0A0S3R6F7_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0229800 | 15 | ||
– | Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0S3R6F7|A0A0S3R6F7_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0229800 | 15 | ||
– | Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0L9TQL1|A0A0L9TQL1_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0230000 | 15 | ||
– | Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|Q9FML2|HDA6_ARATH Histone deacetylase 6; TrEMBL-Plants: tr|A0A0L9TQL1|A0A0L9TQL1_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0230000 | 15 | ||
– | Histone deacetylase; TAIR: AT5G63110.1 histone deacetylase 6; Swiss-Prot: sp|P56519|HDAC2_CHICK Histone deacetylase 2; TrEMBL-Plants: tr|A0A0L9TQL1|A0A0L9TQL1_PHAAN Histone deacetylase; Found in the gene: LotjaGi4g1v0230000 | 12 | ||
– | Histone deacetylase; TAIR: AT5G61060.1 histone deacetylase 5; Swiss-Prot: sp|Q8RX28|HDA5_ARATH Histone deacetylase 5; TrEMBL-Plants: tr|I1JZJ1|I1JZJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0254400 | 11 | ||
– | Histone deacetylase; TAIR: AT3G18520.1 histone deacetylase 15; Swiss-Prot: sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15; TrEMBL-Plants: tr|A0A072UQH9|A0A072UQH9_MEDTR Histone deacetylase superfamily protein; Found in the gene: LotjaGi4g1v0264100 | 12 | ||
– | Histone deacetylase; TAIR: AT3G18520.1 histone deacetylase 15; Swiss-Prot: sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15; TrEMBL-Plants: tr|A0A072UQH9|A0A072UQH9_MEDTR Histone deacetylase superfamily protein; Found in the gene: LotjaGi4g1v0264100 | 12 | ||
– | Histone deacetylase, putative; TAIR: AT4G33470.1 histone deacetylase 14; Swiss-Prot: sp|Q941D6|HDA14_ARATH Histone deacetylase 14; TrEMBL-Plants: tr|I3SY87|I3SY87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0410000 | 11 | ||
– | Histone deacetylase, putative; TAIR: AT4G33470.1 histone deacetylase 14; Swiss-Prot: sp|Q941D6|HDA14_ARATH Histone deacetylase 14; TrEMBL-Plants: tr|I3SY87|I3SY87_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0410000 | 11 | ||
– | Histone deacetylase, putative; TAIR: AT5G26040.2 histone deacetylase 2; Swiss-Prot: sp|Q944K3|HDA2_ARATH Histone deacetylase 2; TrEMBL-Plants: tr|I3S3T1|I3S3T1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0041400 | 11 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
cd09993 | CDD | 1 | 2.63 |