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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0438700 |
Transcript ID | LotjaGi3g1v0438700.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Equilibrative nucleoside transporter; TAIR: AT4G05120.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9M0Y3|ENT3_ARATH Equilibrative nucleotide transporter 3; TrEMBL-Plants: tr|V7BVC4|V7BVC4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0438700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85178808..85182038) extracted from Lotus japonicus Gifu genome v1.2.
ATGTACACATAGAATCCTCACCTTGGTTTATCTACTCTCTTGTAGAGATTCATTAAGAAGTAGCATCCTCCGCCATGGTC AACGGTGAGCTTCAAACACCAACACGTCTTGAGGTTTGTGATTGGATCCATTACTATTCACTACTTTAGCTTATGGAAGC TAAGTGAATTATGTTCTTAATTTCCATGCTTTTTATATAACAGGGAAAATATGCTGCAATAATTGTCTGCTGGCTTCTTG GCAATGGATGTCTTTTCTCATGGAACAGTATGCTCACAATAGAAGATTACTACAAGAAGTTGTTTCCGGTAATTGATGTG TATTCATTTCTCATGCTTACTTTCACAGCTGTTTGCAAAATTGACACAAAGGCACAATTCCAATTTGTATCACTTCCTTG AAATATATATATATATATATATATATATATATATATTACTTTCCTGTCAAATTAAACTTCATGTTCTTTTGTTTTGAAGA ACTTTTTACACTCAATTATGTGATTCAGATGTTGTAATTTTCTAATAATAGAATTGCCTGGGACTCTTGGTAAAGAAATA GTTTAATTTCTTTTTCTCCTTGTGCAGAAATACCACCCCTCCAGGGTGCTTACTCTGGTATATCAGCCATTTGCAGTTGG AACACTTGCAGTGCTGGCTTATAATGAGGCAAAAATCAACACACGAAAACGGAACCTACTTGGATACACTCTTTTTTTCA TAACCACTCTGTTGGTGTTAATTGTAAGTCCAATTCACTTGTTTGTGAACTTTGATTCCTTTAGCATGGTTTTGATTTTA TATATGTTTCCAACCAATCTTCCGTTCCATAGTTGGATTTAGCTACATCTGGAAAAGGAGGACTTGGAACTTTCATTGGT ATATGCGCAATTAGTGGTGCTTTTGGAGTTGCAGATGCTCATGTTCAAGGTGGAATGGTGGGAGACCTGTCCTACATGCA ACCAGAATTCATTCAGGTCAGCATAAGTGATATAATTAGTATTACTATGAAGTTATTGAAGATATGAATTTAATTGCCAC TCTATTTTATTGTTACAGTCTTTTCTTGCTGGCTTAGCAGCATCCGGTGCATTAACCTCTGCTTTGAGGTTAATTACAAA AGCAGCATTTGACAGTTCTAAGGATGGTCTTCGAAAAGGAGCTAGTAAGTTCAACTCTTCAATACCTGAGAAATAAATCA TTCTTCTCTTCTTTTTGTAATTGATTATAACTTATAAGTATAATAAAGTATAAACTACTATAGGCTGCTTGCCAGCAGTC TCAACATTTCTTCATTTAGATACGTTTATGCTTGACTTTAGAACAGTTGTAACTTCTGTTCTGTACTGATTACCAACTTC ACTTTTTTTGTCGTCAATTAGTCAAGAATATGCCTGCAATATGTTTGTTGAACCTAACATTCAATTCATGAACATATGTA TTCTTATGTTGTTGTTTTAACATAAATAAGATAGACACATAATTCCTTCTGTTTTGGTAAAGACAGTAATCCCATTTCTG CTGATAGGGTGTTTGGTACTTTGGTTTACCTTTTACAAACCAATTTAGATTTCAAAATCAATTTTAGCAAGAAGAACAAA CTTTAGCTTGTGGATAGAACTGTATTGGCTTTTGTACCCCCCACTCTACTAAACACACGCTGAGTCCTCCATTATCGTTT TTAAGTGAGATTCTTAGATGGATACTTTTAGTGCCATGTTATCACAATGTAACGTGCCTTATAAATTTGAGGTTGCTTTT TTATTTAGATCAGCAATATCAATTTCTTCTAATTCATTGAAGTTCTGTGGTGCTGGTTCGATTTATTGTTCTTCGCTACC ATTGAATTACATACAACTATGACCATTGTCTTCACTTTCCATACTATTTTTTTTTTTTGATAGGCCTTTCCATACTATTT AGTTACTGATCACTTATCATGCCATATTGTCCTTGCAGCTTTACTATTCTTTGCTATATCAACATTCTTTGAGCTTTTAA TGTATTCTTTATTTGCTTTTAGTTCCATGTCATTACAATATAATATGCCATATATACATACATTTGAAGTTATTTGTTTG TTAGATCAGCAATGTCAATTTCTTCTAATTAATCGAAGTTATGTGATGACGATTCTATTTATTGTTCGTTGCCATTGTAC TATACAACTATGGTCATTGTCTTCACTTCCTGTACTATTTAGTTACTATCATTTATCATGCTATACTGTGTTGCAGTTGT ATTTTTTGCCGTATCAACATTCTTTGAGCTTCTGTGCGTTCTTCTCTATGCATTTGTTTTCCCCAAACTTCCAATTGTGA AGTACTACCGATCAAAAGCAGCATCAGAAGGATCCAAAACTGTTTCAGCTGATCTTGCAGCTGGTGGCATCCAGACATTA CCTGAAGTGAGCACTGTTTCTTTCTTCTTTTTCACTTTCCAATATGTATCAGAACTCTTTCACTGTTTAACATTCAGCTC ATGCTTTAAGGATTCTTTTTCCAGGGCGAGGAATATGAGAAAGGACAAGAGCGGAAGGGAAACAAACAATTGTTATTGGA AAACATTGATTATGCACTTGATATATTCCTAATATATGTGCTAACCCTCTCAATTTTTCCTGGATTCCTTTCAGAAGATA CAGGATCACACAGTTTGGGGTCCTGGTATGTTCATTACAAAACAATAGGCCAATAAATATGTTTTTTGATTATATGTGTA ACAGACTAACAGTTGATGTTAATTTCCTGTTGTTTGTTTCAGGTATGCTCTTGTTTTAATTGCAATGTATAATGTGGGGG ATCTGATTGGAAGGTACATTCCACTCTTGAAATGCGTGAAGTTGGAAAACCGAAAGATGATCACGGTAGCAATTCTATGT CGTTACTTGCTTGTTCCAGCATTTTATTTCACTGCAAAGTATGGTGACCAGGGGTGGATGATAATGTTGACATCCTTCTT GGGGCTATCCAATGGTTACCTTACTGTCTGTGTTATGACATCTGCACCCAAAGGCTACAAGGTGAGTCAGTTGAAGTATT AAATACAAGTTTCAGACTTCAGTGTCATTGATATAAACTATAAAGCACTGAGATATTAATTTTCATGTTTTGGTTTTTTA TAGGGTCCAGAACAAAATGCTTTGGGAAACCTATTGGTGTTGTTTCTTCTTGGAGGTATTTTTGCAGGGGTGACACTTGA CTGGCTTTGGTTAATAGGTAAAGGGTGGTGA
CDS sequence (LotjaGi3g1v0438700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCAACGGTGAGCTTCAAACACCAACACGTCTTGAGGGAAAATATGCTGCAATAATTGTCTGCTGGCTTCTTGGCAA TGGATGTCTTTTCTCATGGAACAGTATGCTCACAATAGAAGATTACTACAAGAAGTTGTTTCCGAAATACCACCCCTCCA GGGTGCTTACTCTGGTATATCAGCCATTTGCAGTTGGAACACTTGCAGTGCTGGCTTATAATGAGGCAAAAATCAACACA CGAAAACGGAACCTACTTGGATACACTCTTTTTTTCATAACCACTCTGTTGGTGTTAATTTTGGATTTAGCTACATCTGG AAAAGGAGGACTTGGAACTTTCATTGGTATATGCGCAATTAGTGGTGCTTTTGGAGTTGCAGATGCTCATGTTCAAGGTG GAATGGTGGGAGACCTGTCCTACATGCAACCAGAATTCATTCAGTCTTTTCTTGCTGGCTTAGCAGCATCCGGTGCATTA ACCTCTGCTTTGAGGTTAATTACAAAAGCAGCATTTGACAGTTCTAAGGATGGTCTTCGAAAAGGAGCTATTGTATTTTT TGCCGTATCAACATTCTTTGAGCTTCTGTGCGTTCTTCTCTATGCATTTGTTTTCCCCAAACTTCCAATTGTGAAGTACT ACCGATCAAAAGCAGCATCAGAAGGATCCAAAACTGTTTCAGCTGATCTTGCAGCTGGTGGCATCCAGACATTACCTGAA GGCGAGGAATATGAGAAAGGACAAGAGCGGAAGGGAAACAAACAATTGTTATTGGAAAACATTGATTATGCACTTGATAT ATTCCTAATATATGTGCTAACCCTCTCAATTTTTCCTGGATTCCTTTCAGAAGATACAGGATCACACAGTTTGGGGTCCT GGTATGCTCTTGTTTTAATTGCAATGTATAATGTGGGGGATCTGATTGGAAGGTACATTCCACTCTTGAAATGCGTGAAG TTGGAAAACCGAAAGATGATCACGGTAGCAATTCTATGTCGTTACTTGCTTGTTCCAGCATTTTATTTCACTGCAAAGTA TGGTGACCAGGGGTGGATGATAATGTTGACATCCTTCTTGGGGCTATCCAATGGTTACCTTACTGTCTGTGTTATGACAT CTGCACCCAAAGGCTACAAGGGTCCAGAACAAAATGCTTTGGGAAACCTATTGGTGTTGTTTCTTCTTGGAGGTATTTTT GCAGGGGTGACACTTGACTGGCTTTGGTTAATAGGTAAAGGGTGGTGA
Protein sequence (LotjaGi3g1v0438700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVNGELQTPTRLEGKYAAIIVCWLLGNGCLFSWNSMLTIEDYYKKLFPKYHPSRVLTLVYQPFAVGTLAVLAYNEAKINT RKRNLLGYTLFFITTLLVLILDLATSGKGGLGTFIGICAISGAFGVADAHVQGGMVGDLSYMQPEFIQSFLAGLAASGAL TSALRLITKAAFDSSKDGLRKGAIVFFAVSTFFELLCVLLYAFVFPKLPIVKYYRSKAASEGSKTVSADLAAGGIQTLPE GEEYEKGQERKGNKQLLLENIDYALDIFLIYVLTLSIFPGFLSEDTGSHSLGSWYALVLIAMYNVGDLIGRYIPLLKCVK LENRKMITVAILCRYLLVPAFYFTAKYGDQGWMIMLTSFLGLSNGYLTVCVMTSAPKGYKGPEQNALGNLLVLFLLGGIF AGVTLDWLWLIGKGW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 15 | 15 | - | – | |
PIRSF | 7 | 413 | 407 | 1.2E-83 | ||
PANTHER | 7 | 413 | 407 | 5.1E-234 | ||
PANTHER | 7 | 413 | 407 | 5.1E-234 | ||
Phobius | 16 | 35 | 20 | - | – | |
TMHMM | 17 | 39 | 23 | - | – | |
SUPERFAMILY | 19 | 408 | 390 | 1.24E-6 | ||
Phobius | 36 | 54 | 19 | - | – | |
TMHMM | 54 | 73 | 20 | - | – | |
Phobius | 55 | 73 | 19 | - | – | |
Phobius | 74 | 84 | 11 | - | – | |
TMHMM | 85 | 107 | 23 | - | – | |
Phobius | 85 | 104 | 20 | - | – | |
Phobius | 105 | 109 | 5 | - | – | |
Phobius | 110 | 129 | 20 | - | – | |
TMHMM | 111 | 133 | 23 | - | – | |
PRINTS | 124 | 146 | 23 | 9.2E-5 | ||
Pfam | 125 | 409 | 285 | 5.3E-37 | ||
Phobius | 130 | 149 | 20 | - | – | |
TMHMM | 146 | 168 | 23 | - | – | |
Phobius | 150 | 172 | 23 | - | – | |
PRINTS | 152 | 172 | 21 | 9.2E-5 | ||
Phobius | 173 | 183 | 11 | - | – | |
TMHMM | 183 | 205 | 23 | - | – | |
Phobius | 184 | 205 | 22 | - | – | |
Phobius | 206 | 262 | 57 | - | – | |
TMHMM | 256 | 278 | 23 | - | – | |
Phobius | 263 | 282 | 20 | - | – | |
Phobius | 283 | 293 | 11 | - | – | |
TMHMM | 293 | 315 | 23 | - | – | |
Phobius | 294 | 314 | 21 | - | – | |
Phobius | 315 | 325 | 11 | - | – | |
Phobius | 326 | 345 | 20 | - | – | |
TMHMM | 327 | 344 | 18 | - | – | |
Phobius | 346 | 350 | 5 | - | – | |
PRINTS | 350 | 366 | 17 | 9.2E-5 | ||
Phobius | 351 | 375 | 25 | - | – | |
TMHMM | 354 | 376 | 23 | - | – | |
Phobius | 376 | 386 | 11 | - | – | |
Phobius | 387 | 410 | 24 | - | – | |
PRINTS | 387 | 411 | 25 | 9.2E-5 | ||
TMHMM | 389 | 411 | 23 | - | – | |
Phobius | 411 | 415 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleoside transmembrane transporter activity | Enables the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other. | ||
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Biological process | Nucleoside transmembrane transport | The directed movement of nucleoside across a membrane. |
Expression pattern of LotjaGi3g1v0438700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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