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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0460100 |
| Transcript ID | LotjaGi3g1v0460100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Equilibrative nucleoside transporter; TAIR: AT4G05120.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9M0Y3|ENT3_ARATH Equilibrative nucleotide transporter 3; TrEMBL-Plants: tr|V7BVC4|V7BVC4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0460100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87474899..87477289) extracted from Lotus japonicus Gifu genome v1.2.
CTGTTATTGTTATCTCATATAGTACAAGTCACTTTGCAGAAGTACCATCCCTCTAGGGTGCTTACTCTTGTATACCAGCC ATTCGCATTCGGAACACTAGCAATACTTGCTTACAAAGAGGCAAAAATCAATACAAGGATAAGGAACCTATTTGGATTTA CTCTCTTTTTCATAGGCACTCTGTCAGTGTTAATTGTAAGTCCTGTTCACTTGTCTGTAAACTTTGATTCAGTTAAAATG GAGTTTTCCTGTTGATTTTTCTTTTCATATAAATCTGGCATAGTTGGATTTGGCAACATCTGGTAAAGGAGGGTTTGGGA CTTTCATTGGCATATGCATAATCAGTGCTGCATTTGGAATAGCAGATGCTTATGCTCAAGGGGGAATGGTGGGAGATTTG TGCTACATGCTTCCAGAATTCATTCAGGTCAGATAACTGCCAATGGAACTAGAGGCTCTTTAGATACCCGTTTGAAAGTA TGAAAATGGGAAAATAACACACCTTGATACACTTTTTGTCGAAATAACAAGTTCTTACTTCTAACTAAAGTACCTCGAGA CGTGTTATTTCTCGTTTTCATACTTTCTAATAGGTATCCATTCTTACTATGAATTTCAAATAATCACTTCAAGATTTGCA TATTTTTTTCTTATGCTTTTGTTGCTCCAGTCTTTCCTTGCTGGTGCTGCAGCTTCAGGAGCCTTAACTTCTGTTTTAAG GTTAATCACAAAAGCAGCATTTGAGAATTCCAAGGGTGGACTCCGCAAAGGAGCCAGTAAGTTGCTTAGCATTGTAACAT TTAATTATTCTGAGTCTAGCTGCATTGATGATTATTGGTTAACATGGAAATATTTTTAGCTGCACATGGTTATAATTAGC CTCTATTTATGTTCTCAATCTTCTCGCTTTCTTATAAGATCATGTTAATACATTGAGTCGTAAGATTTTGCAATTAATAG GTTAGAGGTGTTTGGATTAACTTCTCTTCTCTCATGATCAATTTTGAAAAATGGTTATTCAGACAACAGTTCACAATTTC TTTTAATGGATTAGATTTTTTCATGATTGTTCCATTCTTATCTGCTGTTCATAGAACTAAAAACAATTCAGACTATTGTC ACTCAAGTCACATAAAGTTTAGTTACTGATCCATTTATACTGCCCCTGCAGTTATGTTCTTTGTCATATCAACATTCTTT GAGCTGCTTTGTGTAATGCTCTATGCGTTTGTGTTTCCTAAACTACCAATTGTGAAGTACTACCGTTCAAAAGCAGCATC TGAAGGATCCAAAACTGTCTCAGCCGACCTGGCAGCAGGTGGCATCCTGACCTCACCTAGAGGAGTACTGTTTCTTTTCT TTTTTCAATTAGTGTGTCTTGAAAATTTCTAATTGTTTTGAGACTCAATTTATAAGACTAGTGTTTTATTTTCCAGGATA TAGAAGATGGAACACAGCTTGAGCGCAAAGGAAAGATGCAGTTGTTACAGGAAAACTTTGATTATGCACTTGATTTATTC CTAACACATGTGCTAACACTGTCTATATTCCCTGGATTCTTATCAGAAGACACTGGATCACACAGTTTAGGCACTTGGTA TGTTCTGTTCATTATACACCTAGTATATGTTTGATTTCATTTTGCTCATCCATACCAGCACTTCTAATCTTCTCTAATAA TCGCTTTTGGAAAGAAACCAACATGTTTGATTTCTCCCAACACTAAACCAAAACATATATGATTTCTTTACTTCATTTGC TTATGTTTCTTTCCACACAAACTTCTTCACCCATTGTCTTTTCCTTCATGACCAGAACAAGAAACAAAGAATGTTAAATA TCTATGTTTTTGGTGTCAGTATGTCTGCTAATATAACAGTTGGTATATATTTTCCCTGTTGTTTCAGGTATGCTCTTGTT TTAATTACTATGTATAATGTGTGTGATCTGATAGGAAGATATATTCCACTCTTGAAAACCCTCAAGTTGGAGTCTCGAAA GCTGATCACAGCAACAACCATTTGTCGTTTTTTACTTGTACCAGCATTTTATTTCACTGCTAAGTATGGTTCCCAAGGGT GGATGATAATGTTGACATGTTTCTTGGGGATATCCAATGGTTACCTCACTGTCTGTGTTCTCACTTCTGCTCCCAAAGGT TACAAGGTTGGTCATGTTAAAGTGTTAAGCAATCAGAACTTTCTGTTGCTTAAAGCTATTCAAATATTTGGTTCATTAAT ATTGTTTTTTCCTGTTTTTTTTTTTGCAAAGTTACTTTTGTAGGGACCAGAACAAAATGCCTTGGGAAACTTGTTGGTAT TGTTTCTTGTTGGTGGTATTTTGGCAGGGGTAGCACTTGATTGGTTGTGGTTAATTGGTAAAGGGTGGTGA
CDS sequence (LotjaGi3g1v0460100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGGAGATTTGTGCTACATGCTTCCAGAATTCATTCAGTCTTTCCTTGCTGGTGCTGCAGCTTCAGGAGCCTTAAC TTCTGTTTTAAGGTTAATCACAAAAGCAGCATTTGAGAATTCCAAGGGTGGACTCCGCAAAGGAGCCATTATGTTCTTTG TCATATCAACATTCTTTGAGCTGCTTTGTGTAATGCTCTATGCGTTTGTGTTTCCTAAACTACCAATTGTGAAGTACTAC CGTTCAAAAGCAGCATCTGAAGGATCCAAAACTGTCTCAGCCGACCTGGCAGCAGGTGGCATCCTGACCTCACCTAGAGG AGATATAGAAGATGGAACACAGCTTGAGCGCAAAGGAAAGATGCAGTTGTTACAGGAAAACTTTGATTATGCACTTGATT TATTCCTAACACATGTGCTAACACTGTCTATATTCCCTGGATTCTTATCAGAAGACACTGGATCACACAGTTTAGGCACT TGGTATGCTCTTGTTTTAATTACTATGTATAATGTGTGTGATCTGATAGGAAGATATATTCCACTCTTGAAAACCCTCAA GTTGGAGTCTCGAAAGCTGATCACAGCAACAACCATTTGTCGTTTTTTACTTGTACCAGCATTTTATTTCACTGCTAAGT ATGGTTCCCAAGGGTGGATGATAATGTTGACATGTTTCTTGGGGATATCCAATGGTTACCTCACTGTCTGTGTTCTCACT TCTGCTCCCAAAGGTTACAAGGGACCAGAACAAAATGCCTTGGGAAACTTGTTGGTATTGTTTCTTGTTGGTGGTATTTT GGCAGGGGTAGCACTTGATTGGTTGTGGTTAATTGGTAAAGGGTGGTGA
Protein sequence (LotjaGi3g1v0460100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGDLCYMLPEFIQSFLAGAAASGALTSVLRLITKAAFENSKGGLRKGAIMFFVISTFFELLCVMLYAFVFPKLPIVKYY RSKAASEGSKTVSADLAAGGILTSPRGDIEDGTQLERKGKMQLLQENFDYALDLFLTHVLTLSIFPGFLSEDTGSHSLGT WYALVLITMYNVCDLIGRYIPLLKTLKLESRKLITATTICRFLLVPAFYFTAKYGSQGWMIMLTCFLGISNGYLTVCVLT SAPKGYKGPEQNALGNLLVLFLVGGILAGVALDWLWLIGKGW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 280 | 280 | 1.0E-147 | ||
| PANTHER | 1 | 280 | 280 | 1.0E-147 | ||
| Pfam | 8 | 276 | 269 | 2.1E-33 | ||
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| SUPERFAMILY | 17 | 274 | 258 | 1.02E-6 | ||
| PRINTS | 18 | 38 | 21 | 6.9E-5 | ||
| Phobius | 31 | 49 | 19 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 50 | 71 | 22 | - | – | |
| Phobius | 72 | 129 | 58 | - | – | |
| TMHMM | 127 | 149 | 23 | - | – | |
| Phobius | 130 | 149 | 20 | - | – | |
| Phobius | 150 | 160 | 11 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| Phobius | 161 | 181 | 21 | - | – | |
| Phobius | 182 | 192 | 11 | - | – | |
| Phobius | 193 | 212 | 20 | - | – | |
| TMHMM | 193 | 210 | 18 | - | – | |
| Phobius | 213 | 217 | 5 | - | – | |
| PRINTS | 217 | 233 | 17 | 6.9E-5 | ||
| Phobius | 218 | 242 | 25 | - | – | |
| TMHMM | 220 | 242 | 23 | - | – | |
| Phobius | 243 | 253 | 11 | - | – | |
| PRINTS | 254 | 278 | 25 | 6.9E-5 | ||
| TMHMM | 254 | 276 | 23 | - | – | |
| Phobius | 254 | 277 | 24 | - | – | |
| Phobius | 278 | 282 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleoside transmembrane transporter activity | Enables the transfer of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide) from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Nucleoside transmembrane transport | The directed movement of nucleoside across a membrane. |
Expression pattern of LotjaGi3g1v0460100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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