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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0466300 |
Transcript ID | LotjaGi3g1v0466300.4 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 3-isopropylmalate dehydratase large subunit; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic; TrEMBL-Plants: tr|A0A0R0HD88|A0A0R0HD88_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0466300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88168706..88171151) extracted from Lotus japonicus Gifu genome v1.2.
TGTTGCTGGATGGGGTGTTGGAGGTATTGAAGCCGAGGCAGCAATGCTTGGCCAGGTACATTGCGTTCTGATCTTGATAT GCGCACTTTATGAAACACCGATGATTAATGAATATTGATGGCATCTTTAACTCTTTTGATGTGTTTGTTAATTTGCTTTA TCATGAAATAAGCATGTGGAGTAGTTTAGCTACAGTAACGGTTCTAATGCTGTTTTATGTGATACCTACAGCCTATGAGC ATGGTTTTACCCGGTGTTGTTGGGTTCAAGTTAGCTGGAAAACTGCGCAATGGTGTTACAGCAACTGATTTGGTTCTAAC TGTGACACAAATTCTTAGAAAGCACGGCGTTGTCGGGAAATTTGTTGAGTTTCATGGTATCTGAATTTTCTCAACTCTTG AGGCCAATGGTCAAATATTTTTTTTGCCCTTTTTCAATGTAGGCTGAGTGGCGTTGTTAATTAATATTTTTCATGTTTTC ATTGTGTAGGTGATGGTGTGGGTAAATTATCTTTAGCTGACAGAGCCACTATTGCTAATATGGCTCCTGAATATGGTGCC ACCATGGGCTTCTTCCCTGTGGATCATGTTACTCTACAATATCTCAAGCTAACTGGAAGAAGTGATGAGACTGTAAGTGC TGTTTGTCAACTAATTTATTATTTGCTATGAAATGCTTATAGTATTGTTTGACGTTCATTTTGTCTGAAACAGGTGACCA TGATAGAGTCTTATCTCAGGGCAAACAAACTGTTTGTTGACTATAATGAGGTAATGTTAATATATCGCTGTTGCCCTATA TGCTCTTTTTTAACCAAATTAAATGTGTATACATATGTTTGGGGTATATAATGCTAATTTATATTTTCTATAAATTCAGC CACAACAAGAACGAGTTTATTCATCATATCTTGAATTGAACCTTTCCGATGTTGAACCATGTATCTCAGGACCTAAGAGG TAAGATTATATTCTCCTTCACATGTTGTCCTCTATGTTAACGGTGGTTTAGTTTCAATTTCTGTCCTATTATCTATCTGA TAATTTATACTGAATGATATTCTTTCCAGACCTCATGATCGGGTGCCTTTGAAAGAAATGAAGGCTGACTGGCATGCTTG TCTTGATAACAAAGTTGGATTCAAGGTTCGTGATATAACATGAATTATCTGTTCATAATTACTTTTAAACAAAACTGCTG TATCCTGTCAGTTGGTTGTTTTTGTAATGGAATTCTAATTCGGTTTAGTTTCGCCTCACTTCCAGTATTTGTCTGCAGTA ATTGACCAACATATATTAGTGCTTCAGTGTTCATAGTTGTTTACCTGGATGGTCATAGTTAGAATTGTTTCATATGGCAA GATAGAACCATCAATAATCAATATCTTTTTACTATGTTCATTCGGCTTGCCTATTGGGTGTCATTTACAATTTTTGTGAA GAATGTACAAGGTCCATTTTTATAATTGCTCTAGTTCTGTTTGCCTGTTTAATCATAATCAACTTACTCAATGGCTAAAA TGACGATGCTATATTACTGATATAGTTGATCTTCATCAACATCAGCTCTGTCATTCACCTGTTAATTATATTCAGCAATT AACAGAAGCAATGATGTCAAAGGCTCAATTTTTTTGTATATGCTTGCTTTCTTGTGAGTATATGCCTGGAAGATGCATGT TAATGAACTGAGGGGGGGGGGGATCTCACATTAAGAACCTTATTCTGCATTGCGGTTGAATATGCAGAAGTTGCATCATC TATGCTTCATGGAATGTTGCCTGATGAGAACCCTAGATTAATATAAGCTACTATATTTTGCTAAATATTTTATCTAAATA CAGGGATTTGCTATACCAAAAGAAACACAAGGAAAAGTTGCAAAGTTTGATTTCCATGGACAGCCAGCGGAGCTCAAGCA TGGCAGTGTTGTGATTGCTGCAATAACAAGCTGTACGAATACATCTAACCCAAGTGTTATGCTTGGAGCTGGTCTTGTTG CGAAAAAGGCTCATGAGCTTGGTTTGAAGGTTAGGAACTAATATATTAATTTAAGAAACTGTAACACCGCTACTTCTTTC TTTTTTCAGATTCTAATTTTTGCTGTTTATTATATTATGCCAGGTCAAACCTTGGGTTAAAACAAGTCTTGCTCCTGGTT CAGGAGTTGTTACGAAATATCTACTCCAGAGGTATTTTGAGCTTCTTATTAGAAAACTGTTACTTTATTTTGTACTATCA TGTAGTCACTTCCCCTTTGCTCAATTTAGGGAAAATGCATTCTGATTTTGTATTTCTGTATACTTTATGGCAGTGGGCTG CAAAGTTATCTCAATGAACAAGGTTTTAATATTGTTGGATTTGGCTGCACAACATGTATTGGCAATTCAGGCGATCTGGA TGAATCTGTTGCTTCTGCTATCTCAGAAAATGGTCATATTTCATAG
CDS sequence (LotjaGi3g1v0466300.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCATGGTTTTACCCGGTGTTGTTGGGTTCAAGTTAGCTGGAAAACTGCGCAATGGTGTTACAGCAACTGATTTGGT TCTAACTGTGACACAAATTCTTAGAAAGCACGGCGTTGTCGGGAAATTTGTTGAGTTTCATGGTGATGGTGTGGGTAAAT TATCTTTAGCTGACAGAGCCACTATTGCTAATATGGCTCCTGAATATGGTGCCACCATGGGCTTCTTCCCTGTGGATCAT GTTACTCTACAATATCTCAAGCTAACTGGAAGAAGTGATGAGACTGTCAAACCTTGGGTTAAAACAAGTCTTGCTCCTGG TTCAGGAGTTGTTACGAAATATCTACTCCAGAGTGGGCTGCAAAGTTATCTCAATGAACAAGGTTTTAATATTGTTGGAT TTGGCTGCACAACATGTATTGGCAATTCAGGCGATCTGGATGAATCTGTTGCTTCTGCTATCTCAGAAAATGGTCATATT TCATAG
Protein sequence (LotjaGi3g1v0466300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMVLPGVVGFKLAGKLRNGVTATDLVLTVTQILRKHGVVGKFVEFHGDGVGKLSLADRATIANMAPEYGATMGFFPVDH VTLQYLKLTGRSDETVKPWVKTSLAPGSGVVTKYLLQSGLQSYLNEQGFNIVGFGCTTCIGNSGDLDESVASAISENGHI S
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 96 | 96 | 3.2E-93 | – | |
Gene3D | 1 | 132 | 132 | 1.8E-46 | – | |
PANTHER | 1 | 96 | 96 | 3.2E-93 | ||
SUPERFAMILY | 2 | 153 | 152 | 1.77E-55 | ||
Pfam | 2 | 95 | 94 | 3.8E-41 | ||
PRINTS | 38 | 51 | 14 | 2.0E-8 | ||
PRINTS | 52 | 65 | 14 | 2.0E-8 | ||
Pfam | 94 | 157 | 64 | 1.3E-18 | ||
PANTHER | 96 | 160 | 65 | 3.2E-93 | ||
PANTHER | 96 | 160 | 65 | 3.2E-93 | – | |
ProSitePatterns | 128 | 141 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0466300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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