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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001030
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 31 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.085s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0281259.1
n.a. PREDICTED: 3-isopropylmalate dehydratase-like [Cicer arietinum] gi|502115660|ref|XP_004495258.1| chr0 145809034 145815885 -
4 domain predictions
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Lj0g3v0281259.2
n.a. PREDICTED: 3-isopropylmalate dehydratase-like [Cicer arietinum] gi|502115660|ref|XP_004495258.1| chr0 145809034 145812863 -
4 domain predictions
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Lj0g3v0293229.1
n.a. PREDICTED: aconitate hydratase 2, mitochondrial-like [Cicer arietinum] gi|502183208|ref|XP_004517086.1| chr0 152229592 152233850 -
4 domain predictions
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Lj0g3v0329499.2
n.a. Aconitate hydratase [Medicago truncatula] gi|357453423|ref|XP_003596988.1| chr0 172252336 172262286 -
4 domain predictions
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Lj0g3v0329499.4
n.a. Aconitate hydratase [Medicago truncatula] gi|357453423|ref|XP_003596988.1| chr0 172256348 172262286 -
4 domain predictions
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Lj2g3v1659690.1
n.a. Aconitate hydratase [Medicago truncatula] gi|357483921|ref|XP_003612247.1| chr2 25923111 25929549 -
4 domain predictions
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Lj3g3v2905120.2
n.a. PREDICTED: aconitate hydratase 2, mitochondrial-like [Cicer arietinum] gi|502183208|ref|XP_004517086.1| chr3 36029288 36038705 -
4 domain predictions
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Lj3g3v2905120.3
n.a. PREDICTED: aconitate hydratase 2, mitochondrial-like [Cicer arietinum] gi|502183208|ref|XP_004517086.1| chr3 36029288 36035792 -
4 domain predictions
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Lj3g3v2905120.4
n.a. Aconitate hydratase [Medicago truncatula] gi|357471289|ref|XP_003605929.1| chr3 36034569 36038705 -
3 domain predictions
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Lj6g3v0096480.1
n.a. PREDICTED: 3-isopropylmalate dehydratase-like [Cicer arietinum] gi|502122527|ref|XP_004497788.1| chr6 1167324 1176534 -
4 domain predictions
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LotjaGi1g1v0028600.1
n.a. Aconitate hydratase; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic; TrEMBL-Plants: tr|G7I4S9|G7I4S9_MEDTR Aconitate hydratase; Found in the gene: LotjaGi1g1v0028600 LjG1.1_chr1 3427676 3435783 +
3 domain predictions
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LotjaGi1g1v0028600.2
n.a. Aconitate hydratase; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic; TrEMBL-Plants: tr|G7I4S9|G7I4S9_MEDTR Aconitate hydratase; Found in the gene: LotjaGi1g1v0028600 LjG1.1_chr1 3430879 3434706 +
3 domain predictions
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LotjaGi2g1v0378000.1
n.a. Aconitate hydratase; TAIR: AT4G35830.1 aconitase 1; Swiss-Prot: sp|Q42560|ACO1_ARATH Aconitate hydratase 1; TrEMBL-Plants: tr|A0A1J7FXC3|A0A1J7FXC3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0378000 LjG1.1_chr2 87497976 87505165 -
3 domain predictions
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LotjaGi2g1v0378000.2
n.a. Aconitate hydratase; TAIR: AT4G35830.1 aconitase 1; Swiss-Prot: sp|Q42560|ACO1_ARATH Aconitate hydratase 1; TrEMBL-Plants: tr|K7LNL2|K7LNL2_SOYBN Aconitate hydratase; Found in the gene: LotjaGi2g1v0378000 LjG1.1_chr2 87498985 87504631 -
3 domain predictions
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LotjaGi3g1v0188900.1
n.a. Aconitate hydratase; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic; TrEMBL-Plants: tr|G7ITZ5|G7ITZ5_MEDTR Aconitate hydratase; Found in the gene: LotjaGi3g1v0188900 LjG1.1_chr3 27125940 27134445 +
3 domain predictions
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LotjaGi3g1v0188900.2
n.a. Aconitate hydratase; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic; TrEMBL-Plants: tr|G7ITZ5|G7ITZ5_MEDTR Aconitate hydratase; Found in the gene: LotjaGi3g1v0188900 LjG1.1_chr3 27126448 27132377 +
3 domain predictions
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LotjaGi3g1v0466300.1
n.a. Aconitate hydratase; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|Q9SIB9|ACO2M_ARATH Aconitate hydratase 2, mitochondrial; TrEMBL-Plants: tr|K7KYB1|K7KYB1_SOYBN Aconitate hydratase; Found in the gene: LotjaGi3g1v0466300 LjG1.1_chr3 88165301 88174052 -
3 domain predictions
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LotjaGi3g1v0466300.2
n.a. Aconitate hydratase; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic; TrEMBL-Plants: tr|A0A1J7GFJ2|A0A1J7GFJ2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0466300 LjG1.1_chr3 88166314 88172822 -
3 domain predictions
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LotjaGi3g1v0466300.3
n.a. Aconitate hydratase; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic; TrEMBL-Plants: tr|G7JDJ4|G7JDJ4_MEDTR Aconitate hydratase; Found in the gene: LotjaGi3g1v0466300 LjG1.1_chr3 88166998 88173731 -
3 domain predictions
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LotjaGi3g1v0466300.4
n.a. 3-isopropylmalate dehydratase large subunit; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic; TrEMBL-Plants: tr|A0A0R0HD88|A0A0R0HD88_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0466300 LjG1.1_chr3 88168706 88171151 -
3 domain predictions
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LotjaGi3g1v0466300.5
n.a. 3-isopropylmalate dehydratase large subunit; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|Q9SIB9|ACO2M_ARATH Aconitate hydratase 2, mitochondrial; TrEMBL-Plants: tr|G7JDJ4|G7JDJ4_MEDTR Aconitate hydratase; Found in the gene: LotjaGi3g1v0466300 LjG1.1_chr3 88170768 88172803 -
3 domain predictions
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LotjaGi3g1v0466300.6
n.a. 3-isopropylmalate dehydratase large subunit; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|Q9SIB9|ACO2M_ARATH Aconitate hydratase 2, mitochondrial; TrEMBL-Plants: tr|G7JDJ4|G7JDJ4_MEDTR Aconitate hydratase; Found in the gene: LotjaGi3g1v0466300 LjG1.1_chr3 88170768 88172978 -
3 domain predictions
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LotjaGi4g1v0283000_LC.1
n.a. Aconitate hydratase; TAIR: AT2G05710.1 aconitase 3; Swiss-Prot: sp|Q9SIB9|ACO2M_ARATH Aconitate hydratase 2, mitochondrial; TrEMBL-Plants: tr|A0A151RMM1|A0A151RMM1_CAJCA Aconitate hydratase; Found in the gene: LotjaGi4g1v0283000_LC LjG1.1_chr4 65500179 65505674 +
3 domain predictions
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LotjaGi5g1v0163200.1
n.a. 3-isopropylmalate dehydratase large subunit; TAIR: AT4G13430.1 isopropyl malate isomerase large subunit 1; Swiss-Prot: sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase large subunit, chloroplastic; TrEMBL-Plants: tr|A0A0R0EPY9|A0A0R0EPY9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163200 LjG1.1_chr5 41825603 41835512 +
3 domain predictions
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LotjaGi5g1v0163200.2
n.a. 3-isopropylmalate dehydratase large subunit; TAIR: AT4G13430.1 isopropyl malate isomerase large subunit 1; Swiss-Prot: sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase large subunit, chloroplastic; TrEMBL-Plants: tr|A0A0S3SP98|A0A0S3SP98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163200 LjG1.1_chr5 41825886 41832529 +
3 domain predictions
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LotjaGi5g1v0163200.3
n.a. 3-isopropylmalate dehydratase large subunit; TAIR: AT4G13430.1 isopropyl malate isomerase large subunit 1; Swiss-Prot: sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase large subunit, chloroplastic; TrEMBL-Plants: tr|A0A0S3SP98|A0A0S3SP98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163200 LjG1.1_chr5 41829566 41832529 +
3 domain predictions
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LotjaGi5g1v0163200.4
n.a. 3-isopropylmalate dehydratase large subunit; TAIR: AT4G13430.1 isopropyl malate isomerase large subunit 1; Swiss-Prot: sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase large subunit, chloroplastic; TrEMBL-Plants: tr|A0A0S3SP98|A0A0S3SP98_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0163200 LjG1.1_chr5 41830576 41832529 +
3 domain predictions
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LotjaGi6g1v0010200.1
n.a. 3-isopropylmalate dehydratase, large subunit; TAIR: AT4G13430.1 isopropyl malate isomerase large subunit 1; Swiss-Prot: sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase large subunit, chloroplastic; TrEMBL-Plants: tr|G7I6Q7|G7I6Q7_MEDTR 3-isopropylmalate dehydratase, large subunit; Found in the gene: LotjaGi6g1v0010200 LjG1.1_chr6 1889898 1899474 -
3 domain predictions
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LotjaGi6g1v0010200.2
n.a. 3-isopropylmalate dehydratase, large subunit; TAIR: AT4G13430.1 isopropyl malate isomerase large subunit 1; Swiss-Prot: sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase large subunit, chloroplastic; TrEMBL-Plants: tr|G7I6Q7|G7I6Q7_MEDTR 3-isopropylmalate dehydratase, large subunit; Found in the gene: LotjaGi6g1v0010200 LjG1.1_chr6 1889966 1899423 -
3 domain predictions
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LotjaGi6g1v0010200.3
n.a. 3-isopropylmalate dehydratase, large subunit; TAIR: AT4G13430.1 isopropyl malate isomerase large subunit 1; Swiss-Prot: sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase large subunit, chloroplastic; TrEMBL-Plants: tr|A0A0R0GG96|A0A0R0GG96_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0010200 LjG1.1_chr6 1890270 1899242 -
3 domain predictions
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LotjaGi6g1v0010200.4
n.a. 3-isopropylmalate dehydratase, large subunit; TAIR: AT4G13430.1 isopropyl malate isomerase large subunit 1; Swiss-Prot: sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase large subunit, chloroplastic; TrEMBL-Plants: tr|G7I6Q7|G7I6Q7_MEDTR 3-isopropylmalate dehydratase, large subunit; Found in the gene: LotjaGi6g1v0010200 LjG1.1_chr6 1890270 1899242 -
3 domain predictions
 –