Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi3g1v0473500
Transcript ID	LotjaGi3g1v0473500.1
Related isoforms 1	LotjaGi3g1v0473500.2
Lotus japonicus genome version	Gifu v1.2
Description	transcription repressor; TAIR: AT3G52525.1 ovate family protein 6; Swiss-Prot: sp\|Q3EAL1\|OFP6_ARATH Transcription repressor OFP6; TrEMBL-Plants: tr\|I1LKN3\|I1LKN3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0473500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:89033430..89039084) extracted from Lotus japonicus Gifu genome v1.2.

GATTTATTTATATGTTATCATATATAAAAAGATTATTATAATAAAATACATCTCATTTATATCATAAGAAACGCCTGATA TAATACTACTAGTAGTAGTACTTAAGCTCAAATGGCAAAATCTATGAACAGGATGCTCATGCATCTAATAAAACAAATAT GTAGAACTAGTGGGAAAAGTTACATCAAACTCAAAGAAGAGTTAAGGGAAAGACGGCAAGGCCTACTTAATAGGAAAAAG TCTAAGGTGGAAGAAAGACCAAATATAAACTTAATTATATAAGAAACTTTTTAACTATATATTATTGACAAAAAGGGTAT ACAATACATTCAATCTGTACCAAAAAGAAAAATGAAAGTCTTCAATAAATTAAATATGTTGTAGCAAGGAGTGATTGATT CAATCCTCTCTCAATTTTCTTGTATATTTTGTATTTAGGCTCTAGCACTTTTGTGCTAGCTTATCAATTTATTTTGCCTT TAAAAGAAGCGAGTAATTAATTCAAGTGATATATGCTTGATTTTCTTTGAATAAGATCTTAAAATTCGATTCTTATAAGC AAAAAAAACCTTGTCCTTAAATAGTCAAATGTCATATATGGGGACTAGATGAAGCAACTAGCTAGCTACTTATGTTATAC ATGTCTTATTATCTCATAACTAGCAAAATGAATAATATAACCTTTAATATAGTAGGGCAGTAATATGGTAGATCATGTTA AAAGCTGGTCTAATCGTTAATCATGTGTTAAACAAATTTTTTCACAGTACACGATAAATAAAGCCTTAATAGCATGCTAT CAATTACAGCACCAAGTAGCATTTATTCTATTTTATGGTGCTACAAAAGATAATGCAATTTTACGATAAAACGTGTCATT GAAGTTTGAACACATAAAGAATGGGCTTTATAATTAAGAATCCTCCTATCAGCGCGGCAGATTTTAATTTTTAAAATATC ATTTAATGAAGTCGGTTGAGTTATGACCAATTTGAATATATAGCTTATTGTTAAATGAAGCGGCAACATTTTGTAAAGTA TATTGTCAAACAATATAAAACCAACTTTTAATTTACAAGTGTACACATGGTTGCAGCTATTTAAAGTTTAAACTATTAGT TAGAATATCTCCATGCTCAAAATTAGACTCAATATGAAGACAAAACTTGAAAGGAAGCTTTCTTTTTAGTGGTCTGTTTC CTTGTAAGCCAACTTTATTAAAAAGGAAACTTCCTTTTTTAGTTTAAGGTTATCATGTCCCAATAGAAGTATTGTTAACG TAGGAAGTTTGTTATAAATTAATTAATAACGTAAAGTCTATTGATAACACCATAACCATTTGAAAGTCTTTCTAAAAATG GTAAGCAATACTTCCTTTTGAATTTAACAAAATCTACATATATTTTAGTTAATCAATAAAAAATATTTAAAAGAAAATGC TAAAATTGTTATTGCTAGAAATCCTCAATGTTTTCAATAACCCATAACAGTTTGAAAGTTAAGAGCTCTATGTATCTCTT TTGGAATTGGTTTGGCATGCATGAAACTAGCTAAATACAATGGTAATTTGTTGAATAAAAAATATTTAGCAATAATGAGG GTTGGTCATATGAGACATCACATACGATCGACATATGGAGATTGTGGCGGTAATCTCCAGAGTATTAAAAAATCGTAATT GCAAATGTTTTGACTTGAAAAGTTCTGTGCTCACGCTTCATGCAGTTTTAATTAAATTGAGCCCAATAATCTGCATATGT TGATCATATGTCGCAGAGCTTACATTTAAGAAGTGAATATTTAATCACATAAAAATACGAAAAATGATTGATAAACATAT ATTTTAACCGTCACAAAATGACACAATGGTTGAAAATAACTTTATGTGAAAAATTATCTCAAAGTTTTATCTCTGAAAGA TATCGACCATTATAATTTGTATGTGTAATTCAGTAATTATATTGCCTATATATCATCACCCTAAAAGTTAATTTCATAGT TATTGAAAAACAAGTCCATGAAAAGAAGTATAGCATCATGGTGAATATTATTTCTCTCCTAATTAAGATCGATCAAATGA TTAACCCCTTATACTCCTACGTCAAGTAATTACATGCCTTCATAAACCCCCTCCATGTACTCCAAACTCCAACCCAATTT TTCACCAAACATTTTCAAAAGATATATATAAACCCAACCCCACACCTTCTTCTCCAACTCATCCTAATTAAATTTCACTT TCTATCCACTTTCTGTCTCCATTGTATATATCAAAGCTCTTCTCAAAGTTAGTGTGAATAGGAACCCTACCAACAACAAC ACCATCATCTACCTTTGCAAATCCTTTTATAAACCCAATATTTTTTTTTTTAATTCACTCTCACTATTGTTTATATTATC ATATTTATATTTGTGTGTGTGTGTGAGTGTGATTACCTACCAATGTCTTCCAATTCCAATGACAAGAAAAGTGTGTTGAG AATTCTATTCACAGCAAATGGAAGCTGTGGTTGTGGCAAAACAAAGGCAATTGAAGTGCACGAGCCAACCAAAATACCCA AAATACCCTCCACCCATCACAAAAAGACAACAACAAACCAAACCAGCAGCAAGGCTTCCTCCACCACCACTTCCAACGAC CACAACGGCGGCGCCATCTCCATCTCCTTCGACGACGAAGACGAAGAATTCTCCTCCGCCACCATCTCCGACACCGAAAC CGCCACCACCAACAAGAGCCTCAACCACCACCACCGCCACCACGTGGCGCCGAAACAGAGCCCTCTGCTGAACAGCGTGG CGGTGGAGAAGGACTCATCGGATCCGTATCACGATTTCCGGCACTCGATGCTGCAGATGATCTTCGAGAAGGAGATAGAT TCGGAGGAAGATCTTCAAGATCTTCTACAGTGTTTTCTCCACCTGAATGCTGCGTGTTACCATCATGTTATTGTGAAGGC TTTCAATGAGATCTGTGAAGATGCGTTTTCCGATAAGGTTAGCACTGCTCCGGCGACGACGGAGCCTTCTCCGTCGCACA GGAACGGCCACTTCCTCAAAGGGAAGAGTGAGAGAATTGGATAATGGTTACATGGACACGTTGTCTCTCTATTAAGGTAC AATCAACAAGATCGATGTTATTAAAATATATAATTTTAGTGTGAATTTTTATGTCCCTTTAATTATTAATGTTTTAATTT TAGTAAAAATGCTCGAAACATTCACACGAGTTCCACTAAAAATATGACAATTTAGTAAGACTTACATAAATTTTAATCAA TCAATAAACTTTTTTATAATTAGTATGTTTTGGTAGCATTTCTCTTATATTTTAATGTATCTATTAGTTTAGGATATTTG TGGTTTTCCTTGTAAACAAAATTAAACTATATAGGCTATGTTTGATTTTGCTTCAAACATTGTTTGCTTTGTCTTGGAAT TTGAGTTTCAAATTTCTAAAGCTTGAAACATGAATTGATGAATTGAAGGATGGGGCAAGTTAACGTTTAGTTCAGTTCAT TTAAGTTGAACTGAAATACAAACATGCACATATTCATTGGTTGTGTTTGTTTTGTTCTCGCAAATTTCCAACTCCATCGA TACTAAATGAGAAATAAGAGATATAACAAGCGATATCAATTGAAGAACAAAAGAGATATAAAAAAAAATTGAAATGGGAT GAAAAAGGGTAAATGTATTAAAGTTGATATAAATATCATACTCACTCATGAGAATGAGGATGGGAGAGCTAAGCTAGCGT ATTGTCCATGGAATGTGTCTAGCTAACCCATGTGCAGGCATTGAATTCACAAGAGGGATGAGTTACAAGTAAACATCAAG GTTTTGAAAAGGATGATGTTTTCAATTGGTTTCGGTAAATTGTTGTTTCTAATTAAACAAAGGGTTAAATATGTTTTTTT CTTTCTTTCAACTATATAATGAATTAATTATTGAATAACGTGAAGTTTTGGTCACTCAACCCATTTTAATAATGATTTGC AATGACATGTAGGTTTTAATGATGTGAATTTTTTCATTTTTTAAATATTCATGTGAAATATACAAAGAACCAAAATAAAA AATAGTTAGCCTTTCATCATCTTCATCCCTCCTCATCTTTCATAAATATTGATCAAGAACATGGGGTTATGATCAGTAAC GTAAAAAAAAGTTGAAGATCTAGAAGATTTGCATAATCTACACTTGAGCCTTCAATATACAAACAAAGCAAATGCAATGT TTTTAGTATTCTAGTAAAAGTCTACTTTCAAAAAAAAAAATCTAGTAAAAGTCTCATACACAGACGAATGATAAAAATGG TAGAATATGCTTACTTATGTATATGAATGAATTTTGGGTTATTGATGCTCAATGTTTCTTCATGAATGTATATTCTTAGG TGGAGTATGCTTTTTTAAAACAAAAAAATAGAATAAAGAGAAAACATTTCTAGACTATTGGATATGATAGAGTTCCAGAT TTTATCGGGCTTAGCGTAAAGAATTCGAACCCAATCCTTAACCTATGAGAAGGTACGAATTAAACTCGGAATTTAAGGTC AGTTCAATCAACCAACCGGTAGAACATGACGAAGTCTTCGGTGGGTTGGTTTCAAAATGAACCACTGTGGTTCAGTGAAT TTTTTAAACGAAAAGACAAAAATGCCCATGTTTTTTTATTTTTATTTTCTCTTTTCCTTCCTTTCTTTCTGGATTCTTCC ACTGCTTTATGGGTTTTTCCACTCTCCTCTGTTAATGGAATGAGTGAGACGCTCAAATGTTCAGATCTGAGCGGGTTAGA AGCCACCGCCACCGTGCCTTCGGATCTGAACAGATCAAGCTTTTCCTCCTTTCTAATCTTAAGGGATATTGATGAAGGAA GTCGGTGGTGTTGTTGATTGTTCTTGTCGTTGGTTTTGTTTTGTTACATCATGTTATACTTTTTAGTATTGTTGGTTTAT AAAACAACTTTTGAGTTACAAAAAAATTATTCTCTCTTCCTCTGATCTACACCTAGAAGCTGCAACAATACAACCAGATC TGAGAAGAGTAATATGGATTTGCATTTTAATGGTTGGAATCTAACTGTTTTGGTTTTTAATGGAAGAAAATCTTGACATT TTTTTAATTGTTCATCTAGAACTCGTTGATGGAGGTGACCTAAAAGGCTCAGATCCGGAAGTTTTGGTATATGGTCCTGT TGTGCAGCGTTGGTGGTGGCCGGTCGGAGGTGTGGGAGAGGGGCGTTGGAGGTGTGGAAGCTATTGAGGTTGGTGGTGGA TTGAAATTGGGTTGAAGGACATTTTAGTCAATTAAAGACTCAACCACAATTAATTTCAATCATTCAATTTTAAATTATTA TATCTAATGGTTGTGGTTAAACTGAACCACCGTGGTTCACTTTTTAACCGTCTCACCTGAGCCAACATCGCATATGCTAA TAATTTGTCATTTCAATTCAGTGTGTCAGTTAAAAGTTAAAACTTTAAACCAGCACCCAGTTTATAATAATTTGCTTCTC TAATTCTATGACCGCCGTATATGTCAACTTGAAGTTGCAACAGCGACTGCTTAATATAGGGGATCTATCAGATTTAATTT TGATATATTATGAGTATAATTTTTTTAATCTTTATTACCAAATCACAGGAAAAAA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0473500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTTCCAATTCCAATGACAAGAAAAGTGTGTTGAGAATTCTATTCACAGCAAATGGAAGCTGTGGTTGTGGCAAAAC AAAGGCAATTGAAGTGCACGAGCCAACCAAAATACCCAAAATACCCTCCACCCATCACAAAAAGACAACAACAAACCAAA CCAGCAGCAAGGCTTCCTCCACCACCACTTCCAACGACCACAACGGCGGCGCCATCTCCATCTCCTTCGACGACGAAGAC GAAGAATTCTCCTCCGCCACCATCTCCGACACCGAAACCGCCACCACCAACAAGAGCCTCAACCACCACCACCGCCACCA CGTGGCGCCGAAACAGAGCCCTCTGCTGAACAGCGTGGCGGTGGAGAAGGACTCATCGGATCCGTATCACGATTTCCGGC ACTCGATGCTGCAGATGATCTTCGAGAAGGAGATAGATTCGGAGGAAGATCTTCAAGATCTTCTACAGTGTTTTCTCCAC CTGAATGCTGCGTGTTACCATCATGTTATTGTGAAGGCTTTCAATGAGATCTGTGAAGATGCGTTTTCCGATAAGGTTAG CACTGCTCCGGCGACGACGGAGCCTTCTCCGTCGCACAGGAACGGCCACTTCCTCAAAGGGAAGAGTGAGAGAATTGGAT AA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0473500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSNSNDKKSVLRILFTANGSCGCGKTKAIEVHEPTKIPKIPSTHHKKTTTNQTSSKASSTTTSNDHNGGAISISFDDED EEFSSATISDTETATTNKSLNHHHRHHVAPKQSPLLNSVAVEKDSSDPYHDFRHSMLQMIFEKEIDSEEDLQDLLQCFLH LNAACYHHVIVKAFNEICEDAFSDKVSTAPATTEPSPSHRNGHFLKGKSERIG

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SignalP_GRAM_POSITIVE	SignalP-TM View details on SignalP-TM Search for proteins/transripts with this domain	1	29	29	-	–
PANTHER	PTHR33057:SF99 View details on PTHR33057:SF99 Search for proteins/transripts with this domain View external data on PTHR33057:SF99	5	201	197	6.6E-76	–
PANTHER	PTHR33057 View details on PTHR33057 Search for proteins/transripts with this domain View external data on PTHR33057	5	201	197	6.6E-76	IPR038933 Show description in modal box View details on IPR038933 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	33	76	44	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	45	71	27	-	–
TIGRFAM	TIGR01568 View details on TIGR01568 Search for proteins/transripts with this domain View external data on TIGR01568	119	178	60	2.7E-21	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51754 View details on PS51754 Search for proteins/transripts with this domain View external data on PS51754	121	180	60	17.53	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04844 View details on PF04844 Search for proteins/transripts with this domain View external data on PF04844	125	180	56	2.1E-22	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	187	213	27	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0045892 View details of GO:0045892 AmiGO InterPro QuickGO	Biological process	Negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0006355 View details of GO:0010629 View details of GO:1903507 View details of GO:2000113 Negatively regulates View details of GO:0006351

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0473500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi3g1v0473500.1