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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0476900 |
Transcript ID | LotjaGi3g1v0476900.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT2G27500.1 Glycosyl hydrolase superfamily protein; Swiss-Prot: sp|Q9ZQG9|E1314_ARATH Glucan endo-1,3-beta-glucosidase 14; TrEMBL-Plants: tr|K7LTU1|K7LTU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0476900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89348523..89353445) extracted from Lotus japonicus Gifu genome v1.2.
TATTATTATCTTGAAAAACTTACTGGAAGAACGTTGCAATTAAAATGATACAGAAATGACATTGCTCTGTTGAAAACAGA GTTGCTCTGCTCCTCATTGAGGTATGATTATTTAATATACACCCACACCACACACACACACACACACATTATGAGAAGCT CTCTTTGGTGGCATCATCTCAGTTTCTGTGCCAACAAGGGTGGTGGTCTCAGTTGGTGATTATGGCCAAGATCAGATCAG AAATCACAACTTTTTCCTCCTTCTTCAAATCAGTGCCTTTGCTTCTTCTCATCATTTCTGGTTCGTTATCTACTTTGTCT TCTTCTGCATGATTGATTCCCTTTAATTCCAGAAATAAAGTGGATGAACTAGAAAAGAAAAGAAACAGCTTACAAGTTAT CCTACTAGTCCTATTCTGTTCACACACTTGCCTTGGAAATGGAACATTCTTTCAACCCTTGTTGAGTTGTGATTAGAAGA ATACTACTCCTTTTAGCTTCACAGAATGAAAGGCCATGAGTATAGTATCTATAACATTATCTCAACTTGGTGTAGTCTCT ATTCTCTCTATACACTCAAAAGCTTAGATTTGCTGTGGTACTATATTTATAATAACTTTCTACTTTTTTCTTCTTCACAT TGATGTGGAACTCAGATGAGTACCTACTTTGGCGCAATAGATGGCCATCTTGATTATTGGGCAGTAATGAGCTTCATCTT TGTTAGTGTTCATTTTTAAAGTGAGTGGTTAATGAGAGTTAACCAGATATTTTCTCTCATGAACATTCTGATTGATGTTT CTAAATATATTTCATTTTTCAGATTCATTTGTGCAAATTCATGGCCTTGGTTTTGGAATCAACTATGGACAGATAGCCAA CAATCTACCTTCTGCAACTCGAGTGGCTGTTCTTATAAAATCCATGAATGTGAGTAGAATCAAACTCTATGATGCTGATC CAAATGTTCTCATCGCCTTTTCGAAATCGAATGTGGAATTCGCTGTAGGACTAGGAAATGAGCATCTTCAGAACATGACA AACCCTTCTAAAGCTCAAGCTTGGATTCAGAATCATGTTCAACCTCACCTTTCACAAACCAAAATCACTTGCATCACTGT GGGAAATGAAGTTTCCAATAGCAATGACACTAACTTAATGCAGAACCTTCTCCCAGCAATGCAAAATGTGCATGGTGCCC TTGTGAATCTTGGACTAGACCAACTAGTTTCTGTCACAACAGCACATTCTTTCAACATCATAGCCAATTCCTACCCTCCT TCAAATGGTGTTTTTAGGCAAGATCTGATGCAATATATCCAACCCCTTTTGGAATTTCTTTCACAAATCAACTCACCTTT TCTCATCAATGCATACCCTTTCTTTGCATACAAAGATAACCCAGATGAGGTTCCTTTAAACTATGCACTTTTTCAGCCAA ATCAAGGCATGGTTGATTCAAAAACCAACTTGCATTATGATAACATGTTGTATGCTCAAATTGATGCTGTCTATGCTGCC ATCAAAGCTGTGGGGTACAGCAACATTGAAGTGAGGATTTCTGAGACAGGTTGGCCTTCTAAGGGGGACCCTGATGAAAT TGGAGCTACACCACAAAATGCACTATTGTATAATGGTAACTTGATGAGAAGGATAGAGAAGAAGGAAGGAACTCCAGCAA ATCCTTCAGTTCCAATTGATATTTATGTGTTTGCACTTTTTAATGAGAATATGAAGCCTGGTCCTGCTTCAGAGAGAAAT TATGGCCTTTACTATCCTGATGGCAATCCTGTTTATAACATTGGATTGCAGGGTTATCTCCCAGAGATGGTTATGCCATC CAAATCTAATGTAAGTTAACACATTGGAAATTTCACATGCCTATCAAAATTCTCATAATGTTTTGTTTTTAATATATTTG GCTAGTAGATTATAGCATGTTTGGATCAACTTATCTTTTTTTGAATCAATTCTGAAATCAAAAGTTACTCATTAAAGTTT CTTCCCAAAATGGTAGAATCAAAGATTTCCAAACTTAGTTTTTATTTTCATGTATCTTAATGCTTCCATCACTTTTCATA TGCAGTTTTTGTCTGTCAATTATCTCGTCTGTACAATTACATGCTTGATTTTTTCTTGGGAGCTTTCAAGATTGTGATCA GAAGAAGGGAGGGATCAAGAGGAAACACAGGGAATCATATACATCATTCTTTTGCCATATGAAGTTATTCAGGTGAGGAA GATTTACATTGTCCATGATTTTTCTTTCTCTCTTTCTATTTCTAGTTTGTTTGTACTATTCCTTGTCTTTTATTTGCAAG CTAATTGATATTTTCTCGGTCAGTATTTTAGTATGTGTGAGACACCACATGGATCATTTAATACTGAATCCATGATGGAG TATTTTATTTTTTTGAACTACATGATGGAGTAAAAACTATTATATTTCAGTCTATTAGACTGAATCCATGATAGATTTCA TTTTTTATTGTCTCTGGTCACATGCTACATAATCAAGGCCTCAGATCTTCTATCCTCAAATGTACCTCAATTTACTATCT CACAAATCTTATCATGTCAATTTACATGCTGGTTTTTAAAACACCATTTGAAAATATGGATCCACTCTACTATATTATTG TGCATGTTTGGATATATGGTGAAAAAACACGATAAAAATAAAATTACAATGGTAAATCACTATGAAGATAAAATTACGGT GGACAACTAAAAAAATTAAAAATAAATTGCTACTATCCACCATAATTTTAATTCGACTATAGTTTTTCACTATGTATCCA AATATATACTTAGGAAATTAGAAATGATGATAAGCATATGTGGGAAAGTTCAGTCCAAGGCTCAAAGGCAATACATAATT TATACCACACTTTATTCTCTACTTTCTAATTGTAATCTACAAATTAGAATAGCTTGAAATACTTCAATGTGAAAGTTTTG GAACCATATTTTGGAGATATTCTTCCTAAAATATCAATTAAAGTAGAGCCTGTCAAATGCTGTGCAATTCGTGCGTGACC CAATTGGACATTTGTGCCGACTTTAACCACCGTACCCCTAGAAAACCTTAGATTACTGGTTAGTTAATTATTAAGATACT CTATTGAGTCTCCACCTTCCACATCCCCCACTTTGTAATCAACTAATCATGCATATATGAGTCTTCCTGTGAATAAAATT ATTCTTGTCTTCAGCTGTACAAAAGTCCAATTGGGGTTGCATCAGATCAGAAAAATTTTAAAAAAAGGCCTCAGAACCTC ATGCTAGAAATTCAAACCCCACATGTTTTGTCCATGGTTGTGAACCTTATCTTTGATATAGGTCCCTCTAGTTCCAATAA TTCCTCCCTTCCATTTCCTGATGAAATTTTTGTTTTTTGTTTAAATACTACTTGGGATTTTCCTGTTGCTATGTTTTTCT TTTCTGTTCTTCATCATGATTCATGTAAAATGTTCAAAACAGAACCATTTTGTATACCCATGACAAAGTACGAAAATGGA AAAATAACGAAAGGCACAAGGTACTTTTTGTTCATAAAAAGTGCACTGGAATGTTCTATTTTTCAATTTTCATACTTTTT AACTCGTATCCAAAACATGCTCAAACCTGAGTGTTCAGTAAATGGTTAGTGCAATTGTATTAAAATCATGTGGAATATTC TTCAACATTAGTCACCACTCACCAGAAATTAGCTGGTATAGCTTTTATATAAGATGGCATGGTCCATGCCTTTGAAAGTG ATTGTAGTATCCATACATTAGCTTGATCCAAAGGGGATAAGATTGACAGAGCATCCACTTAAAAATTTCTGGCTCAAATT AATATAATTCATATGGTGCATTAAAGAGGCCATTTTTTATAATTTGGCACTAGAAACAGAAAATATTGTCACACCATGTG TTAAACAACAGAGGAAAAAATAAAGAGCATGTTTTGATATTGGCAATAACTTGTTTAGTTGTCCTTTTCCCCCTTCTAAG TAGAGTGAACAATTTTCAGACATGTTGTTACAGGTTTTTATTCTGCCCAAAACATAAGATTAATAGTGGACACACAACTA CACAAGCATGTCAATATCAGAAACTACACTTAATATCATCTTACTAATAAAATTGAAGATGAGATTTCTTATTAGTTGTT ACTTTTAAATTTAAATTGTTAAACATAATTTAAGAAGTAATCTAACTTGTTGAGGATGTAGTCCAAGTTTAGATACTGGT TGGAAACCATGTGTGGACTGTCATAGTACACAGAATTTCCTTAATTTTAATTTGCTTCTGTCGACATGATTTTAAGATTG TATTTTTCTATATTGTATTCAAATATGCTCCTAATGTGAAATCTCTTAAATTGGTTGTGCATGTTGTTGACTTTGATGTA TCTTTGCATGGGACAGGGCTTTCTTTTCTTTTGTCCAAGGCAAACTCTGCACATTGCGTGAAAAGCTATGTGGAGGCAAG GTCGGCGATTTGGTTCATATAAGAGAAATTCATACATCATGGCTTAACTGCATTTTTGTTCCCCCGTATATTATTGGTGT CACAATTGTACCAAATAGCAATAATCAAATATATGAGGAATGTAGTAATTTTTTTCTTACACATTTTTTTTCTTGATAAC ACATATAAGCATCAATATGCATATGCACTAGAATATGAATTAGAAGTACCCCAAGATTGGATCCCTAGAAAGAAAATATT ACTTTAATACTGAGAAAAAAGAAAATATTATTTTGATGTAGCCATTTTCTAAATGTATCTCGTGACAACAATTTAATAGA AAAAGGGTAGGGGACAAACTTTGTTATTAAGTTACATGATTTATCATTCATTTTTTGTAAAAAAGTTAGATGATGTAAGT GATTGTACATTAAACCACGGGTTGTGATGTAGTGATTGTTCAC
CDS sequence (LotjaGi3g1v0476900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAGATCAGATCAGAAATCACAACTTTTTCCTCCTTCTTCAAATCAGTGCCTTTGCTTCTTCTCATCATTTCTGA TTCATTTGTGCAAATTCATGGCCTTGGTTTTGGAATCAACTATGGACAGATAGCCAACAATCTACCTTCTGCAACTCGAG TGGCTGTTCTTATAAAATCCATGAATGTGAGTAGAATCAAACTCTATGATGCTGATCCAAATGTTCTCATCGCCTTTTCG AAATCGAATGTGGAATTCGCTGTAGGACTAGGAAATGAGCATCTTCAGAACATGACAAACCCTTCTAAAGCTCAAGCTTG GATTCAGAATCATGTTCAACCTCACCTTTCACAAACCAAAATCACTTGCATCACTGTGGGAAATGAAGTTTCCAATAGCA ATGACACTAACTTAATGCAGAACCTTCTCCCAGCAATGCAAAATGTGCATGGTGCCCTTGTGAATCTTGGACTAGACCAA CTAGTTTCTGTCACAACAGCACATTCTTTCAACATCATAGCCAATTCCTACCCTCCTTCAAATGGTGTTTTTAGGCAAGA TCTGATGCAATATATCCAACCCCTTTTGGAATTTCTTTCACAAATCAACTCACCTTTTCTCATCAATGCATACCCTTTCT TTGCATACAAAGATAACCCAGATGAGGTTCCTTTAAACTATGCACTTTTTCAGCCAAATCAAGGCATGGTTGATTCAAAA ACCAACTTGCATTATGATAACATGTTGTATGCTCAAATTGATGCTGTCTATGCTGCCATCAAAGCTGTGGGGTACAGCAA CATTGAAGTGAGGATTTCTGAGACAGGTTGGCCTTCTAAGGGGGACCCTGATGAAATTGGAGCTACACCACAAAATGCAC TATTGTATAATGGTAACTTGATGAGAAGGATAGAGAAGAAGGAAGGAACTCCAGCAAATCCTTCAGTTCCAATTGATATT TATGTGTTTGCACTTTTTAATGAGAATATGAAGCCTGGTCCTGCTTCAGAGAGAAATTATGGCCTTTACTATCCTGATGG CAATCCTGTTTATAACATTGGATTGCAGGGTTATCTCCCAGAGATGGTTATGCCATCCAAATCTAATTTTTTGTCTGTCA ATTATCTCGTCTGTACAATTACATGCTTGATTTTTTCTTGGGAGCTTTCAAGATTGTGA
Protein sequence (LotjaGi3g1v0476900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKIRSEITTFSSFFKSVPLLLLIISDSFVQIHGLGFGINYGQIANNLPSATRVAVLIKSMNVSRIKLYDADPNVLIAFS KSNVEFAVGLGNEHLQNMTNPSKAQAWIQNHVQPHLSQTKITCITVGNEVSNSNDTNLMQNLLPAMQNVHGALVNLGLDQ LVSVTTAHSFNIIANSYPPSNGVFRQDLMQYIQPLLEFLSQINSPFLINAYPFFAYKDNPDEVPLNYALFQPNQGMVDSK TNLHYDNMLYAQIDAVYAAIKAVGYSNIEVRISETGWPSKGDPDEIGATPQNALLYNGNLMRRIEKKEGTPANPSVPIDI YVFALFNENMKPGPASERNYGLYYPDGNPVYNIGLQGYLPEMVMPSKSNFLSVNYLVCTITCLIFSWELSRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 369 | 369 | - | – | |
PANTHER | 14 | 384 | 371 | 4.7E-210 | – | |
PANTHER | 14 | 384 | 371 | 4.7E-210 | – | |
Gene3D | 36 | 358 | 323 | 6.5E-125 | – | |
SUPERFAMILY | 37 | 354 | 318 | 7.42E-88 | ||
Pfam | 38 | 353 | 316 | 1.2E-91 | ||
Phobius | 370 | 389 | 20 | - | – | |
Phobius | 390 | 392 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0476900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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