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LotjaGi3g1v0485000.1

Overview

Field Value
Gene ID LotjaGi3g1v0485000
Transcript ID LotjaGi3g1v0485000.1
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Protein upstream of flc; TAIR: AT2G28150.1 UPSTREAM OF FLC protein (DUF966); Swiss-Prot: sp|Q9LX14|UFC_ARATH Protein UPSTREAM OF FLC; TrEMBL-Plants: tr|K7LTP4|K7LTP4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0485000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:90215045..90219987) extracted from Lotus japonicus Gifu genome v1.2.

GACGAGACAGAACCCGAAAACTTTAATGTTATAAAAAAGACTGTGGAACTGTGGAAGAAACAAAACAGCAAAATCAGAAA ACACCAACAACACAACACAAACACAAGCATATGAATGAACTCTCTCACTCTCAACCACACCAATCAACTCCAATTATCAA ATCTGCCAAAAACATCTCCATACTTCAAGCTACTCTGTACCCCTTCACCCACTCCTGTCCCTGTTTCATCCTCTCCCTCA ATCACTGTCCCTGCCTCCTTCAATTGCGGACATTCACACACACACACACACACATAGATTTTTCTAACTCACTTCATTTC TTCAAGGTATATACATTTTTCACATTTATATTGCTAATGATTCCATCTTTTTGACTTGTTAATACTACTAGCTACTTGGA TCTGATTTGGGCATGTACTTAACTCAGTGATGAAAGTGGGAAATCTCCAACTCCAACCGACCCAGTAACGTTTTTTCAAG AATCAAGTTAATGAGAGAAATGGGGTTGTTTCTTATACAATTTTGAAGCTTGGGAATAGAGAAAGGTTCAATTTTTACAG GTGGGGTTGTTTTGTTTTGCATGTGAGAATGGAAGCGCGGATGAAGAAGTATAGGCAACAAGTGAGTCCTGAGAGGGCCA AAGTGTGGACTGAGAAGTCACCTAAGTACCATCAGAGTCTGAAGGTTCCTGTGATTTACTATCTCTGTAGGAATAGGCAG CTGGAGCACCCTCATTTCATGGAGGTCCCTCTTTCTTCCCCAGATGGGCTGTACTTGAGAGGTACAAAATGGAAACACGT TCTTGTTTTGGGTATGTGGTTGTAGGGTTTTAAAATTTTCCTTTGTGGATTGTGGTTTTTGAGGGGTTTGTTTGTTTTTT GTGCAGATGTGATTGATAGACTAAATGCATTGAGAGGTAGAGGCATGGCTTCCTTGTATTCATGGTCTTGTAAGAGGTGA GCAAGTTTTTAACACTTTCTATGTCATTATGTCCTGTTGTTTAATTTGTGTTGAGAAAAAAGAAAGAAAGGGGGAAATCA GGAAACTTGGTGCATGTTTGGATACACAGTAGATTTTCACCTAGGAATGAAGAATTGATTCTATAAGAAGCTAATCCTAG TTGCTTTTGTGGGAGTGCAATTAATTCTGGAAGGTTTTACGAGAATCCAAACATGCTCTTGATAGGCTTCTTCTTTGCCC CTTGTTTCCCTTTTGAATAATAGTTTAGTAATTACTGCATACAATTTTAATCATTGATATTAGTTTTTCTTGTAATTCAG AAGCTACAAGAGTGGATTTGTGTGGCATGATCTTTCTGAAGATGATTTAATTTTACCAGCCCATGGAAATGAGTATGTCC TCAAAGGCTCTGAGCTCTTTGATGAATCCAATTCAGGTAAAGAAGATATTTTGTTTATTCGTCTTCAAATTATAGTCATT TGGTAGGTTCTGAATGATATAGAATGCCTGTACCCTTAGCCTTTGTGGCTTTTGCTTTGCAGATAATTTCAGTCCCATTA GCAACGTCAAAATGCAGAACGTGAAGCTGCTGCCGGGGCCAGCTTCTTCTAGAAGTCATGATGAAGCCTCTTCCTCATCT AGCATGAATGGGAAAGAGACAAGAACCTCCCAAGAGGACGAGCTTTCTCAAGAACCGCATACGGGCTCCTCGGATGTTTC CCCGGAGTCTAGGGATGAAAAAAGCGACTCTCTGAGCTTGGCATTGACAGAGTACAAAATTTACAAGACTGATGGATTGG CAGATGCTTCCACTCAGACAGAAGAACAAGTTAGCAGAACCAGAGCTCAGAAAACTTGTACAAGGGGTGTATCAACAGAG GATAGATCATTAGAACCTGAATGCCATGAAATATGTCAAGCTGAAGTTCCAGAAGTGAAAGATAATCCGAAAATGTGCAA GGATACCATTTATCCTTCTCCTTCAACTTCAAGCCCCTTATCTTTTGGGAGTAAGGCTGAAACTTTGGAATCTTTGATTA GAGCTGATGCTAGCAAACTGAGCAGCTTTAGGACCCAGGAAGAGGAGGGCGCTCGGGTGCCGCCAACCAACACGAGGCTG AAGGCCTCAAATTTGCTGATGCAACTGATCTCATGTGGCTCGATATCAGTGAAAAACCACAGTTTTGGCCTTATTCCTTC CTATAAGCATAGGTTTTCTGATTCAAAATTCCCTTCTCCGCTGTTCTCCACTTCTTTTATGTTAGGGGAATTTGATTGCT TAGCAGAGAATCCAAAGCTGATGAATCTTAGGTTGGAAGACAAAGAATACTTTAGTGGGAGCTTAATTGAGACTAAACTG AAGGAAGGAGAGGCACATAAAGTTCTGAAACGTTCTTCTTCCTACAATGATGAAAGGTAAGTCTTGCTTTCAAATATTCT CTTGCAGCATTACAAATTCGCACGTGGAAGAGTTATTCATGCTGGTGTTTTCTTAATTTTGTAAGAAATGGACTAGTCAT AATCAAATAGTTATTCAATGTTGAGGAAATAGTATATGGATTGCTTAAGGTCTGATGTAGCAACAGGATTGATATCTAGA ATGTAGTAATTCTTTAAGTTTTGAATTGTGAATAATGCCTGATTAGGAAGAAAACCAGTGACTTGTGCAAGTGGTCTATA GGTGATAATGCTAACTGCTTGAATCTGTTCATAGAAGGCTAATTGAGTTTCTCTCAGATCTGAAAATATTTTTCCAGCTT GAGTTATATTCTCCAACATTAAATGAATGATTTCAAAAGTAACATAACATCCACTAAGCTGTGAATTGTTACAAATCAAA GTCCACACATTGACATTTTGCAAATGCTTTCACTATTTCCCCCATATCACTTAGCATTTTTAGGTTTTTATTAAAAGAAA TCACTTGAACATCTTCTGTCCCTCTGATCATGGTTAAAAAGCCTATGTTTTTGTATTTCTTTTGTCAATGGGCTGTTAAA GCTAACATAAATTCATGAAATATAAGTACTTTCACATGCTTGTTTATATGTTTATTTCTTAAAGGTTACAAAGAATTGCT GTTTTGTGAACATAACATGCTGATTAAAAAAAAGAATACTTGAAATATCTAATATCAGACCACCTCCCTTTTCTCAACAA AAGGAAAAGGAAAGGACAAAAAGGGGTGGAGTGATAATCTGAAAAATAATAAATAGAGGCACATATATCATGTTATTATG AGCATCATTGCTGTTTTATTTCTTTCTTATAATATGAGCTCTTTACATGGAGGCTAATCTATATAACATGCCACTGGGGT CAATGATTAATGTGGTTGGCTTTTTGGATTCGTGATTTACAGTTTTGTCTTTGGTTATGATTGGATTCTGAATGGAACAT GATAGTTATTATTACATTACATCCTGGCCAATGTGTCATCTGTAACATAACCAATGCACAAATGTGCAGGACATATAAAG ACCAGAAACCACAAGAAGACAAAGAGGAAACATCCTCAGGACATTCAAAATGCATTCCACGATCAATCAAGGCTTCATTG ACCAAGCATCCACGAAGCGAATCCATGAAATCCCCCGTTTCTGATGGGCCAAGAAACTCATCGGACAGATTTGATGGATC AGGCATATCCTCAGTAACATCTAACGGTAGCAGCAAAAGAATCTCCGAACCTTCATCAGGGAAGAAGCAGTCAAAGAGGA TAGATTCGTTTAGGGAAGAAGAGGTGATCAAAATAGAAGAAAGTTAAGTATTGACTCTATCTTTTCCCTTCTAAGATTCT TAAATTTAGAGAAGTGATTTTAGTGTTAATATTAATATTAACTTTGTTCGTATTTAGTCCCTAAAAAATATAAAAATTAA GTGCTTTTAGTTCCTGATCGCATGATTTATGTACTTTTAAGGACTAAAAGTGAGTAAATTTTTTGTAGGACTAACAATCA AGAATGATTGGTTTAGTTACACTTTTGGTCCCTATAATTTTGGGAATGTCCCTATAGTTTCAATTGCTCGAATTAAGTTC CTCTAGTTTCAAAATTGAGCAATTTTGGTCCAAATATTGATTTGTCATCCAATACCTAACGCAAACTTTTGACATATATG ACAATTTTTTTAAGTGTAAATTATTGGGGCCAAAATCACAAATTCCTGAAACTATAGGGATCAAAAATGTATTTAGCCAA ACATATTTTACCCTTCAATTATTACTATATTCATACAGCTTTTAGCAATCTAGACTGATAGATTTGATTTCTTCACAACA GGCTTGCTTCAGGAGCTCGGGTTATAATCCAATCATCCAAACCATTTTGTGACACAGCATCTAGCAGCCCTTGAAAAAAG TTTCAGAGTTTAGAGAACAACAAAATTGCTGGTGTTTTTAGCTTTAGTTTGAATTCATCATTATTGTATATAAGTTGGTA GGTGCATGCGACATTTCCATAAGGCTATAAAGTGAAAATATTTTGAGAATGACTCATTGCAAAGAGAAGTAGCTAATAGT GCAGGTGTGGTCCCAACATGGTGCTGGATAGAGAGGGACTTTGTCTTTTATAACTACAAATACAATATCTTCCTTTTGCT TCCTTCCTTGTGTTTTTTCCCTTATAAGGACAAATGGTGCAAGTGCTTGTCGTTTTCAGAACCATTCCTTGGCATTGGTG CTGGTGTTGTCAAATGGTAAGCATGTGACATTGAATGTGACATTGGATGCGTTTGTGGTAAACTTCAAAAACATTTACTT GGATGGTAGAGTGTAATTTGTCAAAGCTAAAAGGTGGTATAAAAGCTAGTTTTATGGTGCCTTTTGTAGTAACTCTAAAA GGGAGCGCTTCAAAGTCAAAATTTAAAAGCGGGGTATTCTTTTTGGGAAACCAAAATGTAGGTTGACAAATTGGCATTTC TATGCTTCTAGGCTAGAGACACCTTTAAGTTAATGCGCCATAATGCTGTTGGAAAAATGGTTC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0485000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGCGCGGATGAAGAAGTATAGGCAACAAGTGAGTCCTGAGAGGGCCAAAGTGTGGACTGAGAAGTCACCTAAGTA CCATCAGAGTCTGAAGGTTCCTGTGATTTACTATCTCTGTAGGAATAGGCAGCTGGAGCACCCTCATTTCATGGAGGTCC CTCTTTCTTCCCCAGATGGGCTGTACTTGAGAGATGTGATTGATAGACTAAATGCATTGAGAGGTAGAGGCATGGCTTCC TTGTATTCATGGTCTTGTAAGAGAAGCTACAAGAGTGGATTTGTGTGGCATGATCTTTCTGAAGATGATTTAATTTTACC AGCCCATGGAAATGAGTATGTCCTCAAAGGCTCTGAGCTCTTTGATGAATCCAATTCAGATAATTTCAGTCCCATTAGCA ACGTCAAAATGCAGAACGTGAAGCTGCTGCCGGGGCCAGCTTCTTCTAGAAGTCATGATGAAGCCTCTTCCTCATCTAGC ATGAATGGGAAAGAGACAAGAACCTCCCAAGAGGACGAGCTTTCTCAAGAACCGCATACGGGCTCCTCGGATGTTTCCCC GGAGTCTAGGGATGAAAAAAGCGACTCTCTGAGCTTGGCATTGACAGAGTACAAAATTTACAAGACTGATGGATTGGCAG ATGCTTCCACTCAGACAGAAGAACAAGTTAGCAGAACCAGAGCTCAGAAAACTTGTACAAGGGGTGTATCAACAGAGGAT AGATCATTAGAACCTGAATGCCATGAAATATGTCAAGCTGAAGTTCCAGAAGTGAAAGATAATCCGAAAATGTGCAAGGA TACCATTTATCCTTCTCCTTCAACTTCAAGCCCCTTATCTTTTGGGAGTAAGGCTGAAACTTTGGAATCTTTGATTAGAG CTGATGCTAGCAAACTGAGCAGCTTTAGGACCCAGGAAGAGGAGGGCGCTCGGGTGCCGCCAACCAACACGAGGCTGAAG GCCTCAAATTTGCTGATGCAACTGATCTCATGTGGCTCGATATCAGTGAAAAACCACAGTTTTGGCCTTATTCCTTCCTA TAAGCATAGGTTTTCTGATTCAAAATTCCCTTCTCCGCTGTTCTCCACTTCTTTTATGTTAGGGGAATTTGATTGCTTAG CAGAGAATCCAAAGCTGATGAATCTTAGGTTGGAAGACAAAGAATACTTTAGTGGGAGCTTAATTGAGACTAAACTGAAG GAAGGAGAGGCACATAAAGTTCTGAAACGTTCTTCTTCCTACAATGATGAAAGGACATATAAAGACCAGAAACCACAAGA AGACAAAGAGGAAACATCCTCAGGACATTCAAAATGCATTCCACGATCAATCAAGGCTTCATTGACCAAGCATCCACGAA GCGAATCCATGAAATCCCCCGTTTCTGATGGGCCAAGAAACTCATCGGACAGATTTGATGGATCAGGCATATCCTCAGTA ACATCTAACGGTAGCAGCAAAAGAATCTCCGAACCTTCATCAGGGAAGAAGCAGTCAAAGAGGATAGATTCGTTTAGGGA AGAAGAGGTGATCAAAATAGAAGAAAGTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0485000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEARMKKYRQQVSPERAKVWTEKSPKYHQSLKVPVIYYLCRNRQLEHPHFMEVPLSSPDGLYLRDVIDRLNALRGRGMAS LYSWSCKRSYKSGFVWHDLSEDDLILPAHGNEYVLKGSELFDESNSDNFSPISNVKMQNVKLLPGPASSRSHDEASSSSS MNGKETRTSQEDELSQEPHTGSSDVSPESRDEKSDSLSLALTEYKIYKTDGLADASTQTEEQVSRTRAQKTCTRGVSTED RSLEPECHEICQAEVPEVKDNPKMCKDTIYPSPSTSSPLSFGSKAETLESLIRADASKLSSFRTQEEEGARVPPTNTRLK ASNLLMQLISCGSISVKNHSFGLIPSYKHRFSDSKFPSPLFSTSFMLGEFDCLAENPKLMNLRLEDKEYFSGSLIETKLK EGEAHKVLKRSSSYNDERTYKDQKPQEDKEETSSGHSKCIPRSIKASLTKHPRSESMKSPVSDGPRNSSDRFDGSGISSV TSNGSSKRISEPSSGKKQSKRIDSFREEEVIKIEES
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF031043
1 463 463 2.9E-137
IPR021182
PANTHER
PTHR31083:SF6
3 516 514 2.8E-187 –
PANTHER
PTHR31083
3 516 514 2.8E-187
IPR010369
Pfam
PF06136
33 419 387 5.0E-140
IPR010369
MobiDBLite
mobidb-lite
143 196 54 - –
MobiDBLite
mobidb-lite
150 165 16 - –
MobiDBLite
mobidb-lite
166 196 31 - –
MobiDBLite
mobidb-lite
408 436 29 - –
MobiDBLite
mobidb-lite
408 516 109 - –
MobiDBLite
mobidb-lite
460 492 33 - –
MobiDBLite
mobidb-lite
493 516 24 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0485000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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