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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0501800 |
| Transcript ID | LotjaGi3g1v0501800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CSL zinc finger protein, putative; TAIR: AT2G15910.1 CSL zinc finger domain-containing protein; Swiss-Prot: sp|A8XMW6|CED1_CAEBR Cell death abnormality protein 1; TrEMBL-Plants: tr|I3T1V2|I3T1V2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0501800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92019852..92025233) extracted from Lotus japonicus Gifu genome v1.2.
CCTAAATTGATCAATTAAAAAAATTCATATTTTCCAGATTTATATGTCCTTCCAGTTCACAAAATCCGTAATATTTGCTT AGTTTTGCCCCCGTGAAATTGTCATTGCCCAGTTGCAAACAGAACCGCTTCTGAAACAAGTTTGCATGATCCCTCTTGGA TTCATTGACCTTTCCATATCTTGAGATTGAGATACAAATCTCGTACTTTTTTTTATTTTTAAGGTATGCAAATCAGTTTC TTGATTCATAAGTTATTACTTTATTTCCCTTATTATTTTAATGCTTATCCTTGTTTATATCCTGGATTAATGTTCCACAC ATGCAAACCTTAATTCACGAAGGTCACACTTTGTTTTTTATTCCTAATGAAACACAAACGTTGATGCCACTTTGTTTCTA TCACCAGAAATATTGTTCTTATCTGTCCCAACCAAAAGGTTGACAAAAAACTACAATTTTTTCTTCTTCTGCTGTGGAAA TTTTTTTTTTCATGTTATATATATAACTAGTTTTGTTCTTCCCTTCTTGTCTTGCTCAGAAGATGATCACCTTGTTGAAG AAGAGGATGGGGATGGTTGAAATTTTTGAAATGTCCAAGATGAGGAGAACAACCTTCATGAAACAGGTGTTGGTCATTGG TGTGATGGTTATGTTGTTTGTTGCTGATGCAGCTGATACAAATGATGTTTATAGTCCATGTCTTGATGCCAAAGTTCAGA GAGGAGATGGCTTCACCTTTGGTATTGCACTTGCGGATAAGCAAATTTTCTTCCAAGATGGTAATGGTCCTCAGCTTTCC CCTTGCGACTCGCGCCTTGGTCTCTCAAGCAAAGAAGCACAAGCTGCTATGTTTAGGCCAAAGGTGGATGAGATCTCCCT GCTTACCATTAACAGGAGCGCCTTAGACTCGGTATGCAATTTCATGTTTTTATGGCAAAAATCCTAATTCTTTGTGTATA TTGCATCTTTGCAACAGATAGGAGATGTTTTTAGCAATATTTAGTTTGATGAGAATGATGTGGTTGGTATTTGACTTGGT TTATAAGTGTTTCGACTTAAGATACTAGAACTTTCATCTCAATTCATTAGAAGGGTTTCTTCAATTTTTATCTTGAGGTG CGTATTAACATCTGTTTGTACCGATACATGCAGATACTAAATATTTGGCTTTACACTAGTTTTTCTTTTCTTGTTCCCAT TATTATCATGTGTTCCGGTAATTGCATATTAGGTCAGCCTAGGGGTATTACATGAGGTAATGATATTAGATATTGTATCC TATGATACAAATATTTTTCTGATTAATAGAACTTCTTTGTTCTTGAGACTGTCTACTAGCTTATGAACTTGCACATGTGA ATAATATCAAGGAAAAACTTCAAAGCAATTTTTGTGATCGAATTAGGTGGCTATCAACTGGTATACAATATTCCTTGGCA TATGATGAACTTCTTGAAGTTCTGATAATATGGATTGTTCCCTTTGAAGAATTATTTCTGCTTTGTTCTGATTTCAAAGC TGGATATACTAATGCAGCTGTGTTCTTTAACAAAATTGTAAAAAAAATTCTTAATTAATATTGGGAGTTTATCAGGGAAA AACTGGTGGATACATGGTTGCATTTGCTGGACAGAAATATGCAGCAAGATCACTACCAATTATGTTTGCAGACAATAGTC ACACAATTACCAGTTTCACTTTGGTAAACGCATTTGACAGGCTCAACTTGTGCTTTCCTAAGAACATAATTTCATTTAGG ACCATCTCTAGGGAAGTAACTTTGAATTTGAACATTTTAACAGGTTCTTGAATTTAAAGAGGGGACCCTTCAAAACTTGT TCTGGAAGAGGTTTGGTTGTGGTGCATGTTCTAAGGGAAGCGTTTGCCTGAATAATCAAGATTGTGCAGTGCCAAACACA GACTGTCAGAAGAATGGTGGAACTACATGCAATATAGGCATACAGTTGACATTCTCAGGGACTGACAAGAATCTTGATGC TCTTAATTCTTGGTATGAAGTCAAAAATCTAAGGCAGTACTCCCTCTATGGTCTATTCTCTGATCATCGTCAATCCATCA TTGGGATATGACAAGTTTTTTAAGTTTAAATGTTTCCAGCTTGTATGGTTAGGAGACTATACCCATTTATCTGTTCTACA TGTGAGTTTAAGTGTCTTTCATCTCTCTTCACATTCAAAAGTCAAAAATCCCAACAACTTGATGTTTCTATTTATCCCAT TCGGAAAAACTTATTTGAGCTATCTTATAGCTTCAACGTTTATGCAAACGTTTAACAGAGCTTATGTAAATAGATTATGA GCTATCTATAAGCTGTTTTGAGCTTATTTTCATAAGCTGCTCTGATTAGCTTATTTCCATAAGCACCAAATTAAAGTGTT TACCCAAACACACCCTTAACCTGACGTTATGAATTGGGGGTTTTCCACTTAACAAGACATGTAAATATGTTGATCCTACT CTGAGGAAATCCAGTTATGCAGAAACATTTAGGTACCTTAAATTGAGTAAAAATCAGAACATAAGGGCATAAAAAAGAAA AGTCATCAATGGCAAGGTGCCAATTAAATGGCAATAAAGATAATTCAAAGTCTGTAACATATCACTCTATAGTCAGTTTA GTACAGTGTCACCTCAAACTCAGGATGATAAATCTAAAGATGATTTTTTATACATTTTTCTCTATCAGTCTAGTACCCCA TTTTTATGAGTACCCCAAACTCAACATTACAATAGCTCTTTGACATGTATATCATTGAGTGAGACAAATCTTGTTGCTTC ATTTTGATTAAGCTCAACGACTAGATCCCCCATTACAAGTTATGTAGTATCTTCTGAGTTTTCAGGCTCAATTATAACAT TGAAGCCGAATTCTTTTCCTGGTGTGAATGATTTTTTAAGTTCTTCTGCCGTTTGAGTAGTGCTTACCTTCTTACCCTTC ACATCCAAGTTTTCCTGGTATTGGGTCATCAAATGTGAAAACAAGTCTATATCCAAAATAGACAAACATGGAGTGGTAAA AATCACTTGCCTTTTTCGCATAATTAGCCATGGTAGAGTTGAGAATTTCTTGTATTACAAACTTAGTGACTCGTTCTTCC CCAAGAATCTGTACAAGAAAGCTTTTCGGGATCTGCATTGATTTCCTAACCAAGTCATCTTAAGGAAGTCTAAAGCTATA CATGATAATCATTTACAGATGTTCAGTTGCATTCACCAGTGCTCAAATAACAATTTCCTTGTCAAAAATTTATATATTAA ATGATACTAAGTAATAACTCATCAAATATAAAAACTAGATTGGAATTTGGAGAAACGCACCTTTGATGATTTTCCTGAAG CAGTTCGCACATCACATGCAAAAGGTAATACAGTTAAAATCCATTCACTGCAATTTATTATGCTCTGCTAGAATACATAT GAATGCGAATAACAAAGTCACTATTTGGCCAAGTATTGAAAAGACACAGACATTGTTATTTTGTAATGGAGCTTTAGAAT GCAATTGCTCTAATTTCACAGAAAGATGGTTATGAGTTTTTAGTAATTCTGGAATGTGGCTGGTAATAACTTGGGCTCAA GCAACTCTTTAGGATAAAAGGGTTTTTGAATGGAGGAGGAATCTTGCAGCAAATGGCAAGCTCATTTGTGTCCCATGGCA TGTATTGCAATATACGAATCATTATTGAGCATGAGAGCAAAAAATCTAATAACCAATAGATAGGTTCAGTCTATGAAGGT GCATGATATCAATCTGTATCAATAGTGCAGATTTTCACCTCCTTTTTGCATGCGAAATCCAGGAACTGGTGGGGCAGTGC GCCCTAAGCTTATGAGGGTCCGGTCAAATACCCTTTCTGTTTGATCACCAGTCAAGTCCACTCTTAGCTGCCATTTATGC CATGATGAGATCACAAAATCAAGCCCAAAAACAGCAAGGTACAAGAAAGTGAAAACAAAAAATTTAACATGATGCAGTAA TTTACAGAAACACACTTCAATAAAAAATAATAGATGACATTGAAGGGGTAGGCTAAAGAGAAAAGGAAAAGCTTTGTATA GTCATATATCTGGCCATATTTTGAATATATTTGAAGCTGCAGGCGGCATGGTATACTAGTGGCGGTGTGACGGTGTCGGG ATAACAATTAAACATATGATTGGATAAACAAAAGCAATATGATGGAGTACATAATCATGACAGAAGCAATTTAACTACCA CATAGGGTATTTGACCCGATAATCGAGCAAGAAGACTACTGAACGTTTCTAATTAAGCCTAGTTATTCAAGGTTATCAAA TTGATGGACAAGATTTTTTATATAAATAACATCCTCTTCAAGAGAAAGCAATGACAGCTGTGTATGGAAACAAGCAGTAG AAGAAATTATCAAGAGAAACATAGATAGAAGCAATGAAGCTATAGTATGGGATACAGAGAGAGAGTGTGACAACATATAG AAACATCAGATAATTTCCTGAAAGAGCCAGAACAGCAATTCTAAGTTGGAATTAGCAGTTTTTGGTGTTTGCTTACTTGT ATCTTACTTTCATCTTCAGATTCTAGAACTATTTGGGCATTTGTTAAAATGGCCGAATTTTCATCGGAATCTGTAATTGA TGCTTCTAAACCTACAACAACACAAAAGCATATACATAATACTAGTTTAGCATCACAAGCAATGAATGTAAATCTCAAAT AATTCAAGGAAAAAAAATGGATGCAACACACCATTTTCTCTACTTAGGAAGTTTGAATTAGCCCATTTTTCTCTACTTAG AACCCCCAAATGGATTCATTCAAGTATCTCAAATCCTCCTAAGGAAAAAGGGTATGAAAAATCACCTGAATTAACAGCTG AAATTGGCGTGTTTAGATGTCTGAGAGTTGTCCTGGTAGAACTAGAGAGAATATCTAAGCTGCAAGAAAACACACAAAAG CAAATTGTTGGTTAAATATCATTCTCAAACACCTCAAGGAAGAACAACACTAACTAGTGGGTAGTAATGAAAATACAAGT GAAGTGAAGGAATTCAGAACCTTTTTCTCCTCAAGGGTGGACCGAGACTGAGAGAAACAATGCATCTTGATTGTGCATTT GGAGGAGCAAGAACGTGAACATGAACCTGAACATGAGCATGACTGCAGCAGGTTCGAGTTGTGAATGAAGCAGCTCCAGG TGTAATGGAACTGGAGCAGGAGGCTAACATCATGGTATTGTTCACGTTCGTGTCGTCTCTCTCTCTCGAATGAGTGATGC CTTATCCCTTTTATGATAATTCTGTTTTGTTTGCCACAACAGGGTGGGGTTCAGTTCAGGATCCAATACCAAATTTCCAA ACTACCACTAACCAATAACCAT
CDS sequence (LotjaGi3g1v0501800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCACCTTGTTGAAGAAGAGGATGGGGATGGTTGAAATTTTTGAAATGTCCAAGATGAGGAGAACAACCTTCATGAA ACAGGTGTTGGTCATTGGTGTGATGGTTATGTTGTTTGTTGCTGATGCAGCTGATACAAATGATGTTTATAGTCCATGTC TTGATGCCAAAGTTCAGAGAGGAGATGGCTTCACCTTTGGTATTGCACTTGCGGATAAGCAAATTTTCTTCCAAGATGGT AATGGTCCTCAGCTTTCCCCTTGCGACTCGCGCCTTGGTCTCTCAAGCAAAGAAGCACAAGCTGCTATGTTTAGGCCAAA GGTGGATGAGATCTCCCTGCTTACCATTAACAGGAGCGCCTTAGACTCGGGAAAAACTGGTGGATACATGGTTGCATTTG CTGGACAGAAATATGCAGCAAGATCACTACCAATTATGTTTGCAGACAATAGTCACACAATTACCAGTTTCACTTTGGTT CTTGAATTTAAAGAGGGGACCCTTCAAAACTTGTTCTGGAAGAGGTTTGGTTGTGGTGCATGTTCTAAGGGAAGCGTTTG CCTGAATAATCAAGATTGTGCAGTGCCAAACACAGACTGTCAGAAGAATGGTGGAACTACATGCAATATAGGCATACAGT TGACATTCTCAGGGACTGACAAGAATCTTGATGCTCTTAATTCTTGGTATGAAGTCAAAAATCTAAGGCAGTACTCCCTC TATGGTCTATTCTCTGATCATCGTCAATCCATCATTGGGATATGA
Protein sequence (LotjaGi3g1v0501800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITLLKKRMGMVEIFEMSKMRRTTFMKQVLVIGVMVMLFVADAADTNDVYSPCLDAKVQRGDGFTFGIALADKQIFFQDG NGPQLSPCDSRLGLSSKEAQAAMFRPKVDEISLLTINRSALDSGKTGGYMVAFAGQKYAARSLPIMFADNSHTITSFTLV LEFKEGTLQNLFWKRFGCGACSKGSVCLNNQDCAVPNTDCQKNGGTTCNIGIQLTFSGTDKNLDALNSWYEVKNLRQYSL YGLFSDHRQSIIGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 43 | 43 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 18 | 253 | 236 | 7.8E-113 | – | |
| PANTHER | 18 | 253 | 236 | 7.8E-113 | – | |
| Phobius | 29 | 39 | 11 | - | – | |
| Phobius | 40 | 43 | 4 | - | – | |
| Phobius | 44 | 254 | 211 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0501800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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