Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0525600 |
Transcript ID | LotjaGi3g1v0525600.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA binding protein, putative; TAIR: AT1G50300.1 TBP-associated factor 15; Swiss-Prot: sp|Q9AST1|TAF15_ARATH Transcription initiation factor TFIID subunit 15; TrEMBL-Plants: tr|A0A072UXF8|A0A072UXF8_MEDTR RNA recognition motif (RRM) superfamily protein; Found in the gene: LotjaGi3g1v0525600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94235067..94240070) extracted from Lotus japonicus Gifu genome v1.2.
TCACATTCTCTTGAATTTATTATTTATTCACTGTAATTTTTATTTTAATTTTAAAAATGCAGTGAAAGAAGCTAGAGTGT GAGTGGGGATAGGCGAAAACGTGAATAAAAAAGAGGAAAAAATGAAAAAAAAGGGATTAAGGTTAAGGATTAACAGTAGA GGAAGGAGAAGAAGCACAGAAGAAGAGGGAGAAGCGAGAAATCAATCTCATTGCAGATCTATCGATTCATCGTCGTCCTC CTCCTCCTTCGATTCAGGGTAAAACCTTCTCATTCCTCCCTCGATTTCCTTCGTTTCTTTCCCCCTCCCTCTCGCATGCT GTATCCATTTCAAATTTCCACAATCGCTTCTGTTACTTCGCATTGCACGATTTCCATTTCAACAGAGCTGAATTTTTGTA ATCTAAATGTTTGTTTGTTCTCGCTGTCAATTATAGTAGAATGCTCTTGGTTAGGCTAATTACTGGTTTGATTTCTTTGT AGACGTTTTTCGCGTGTTTCAGTTCTGAGTTTTTCTTTTGCAATTCTTGAAGAGTTTTGTGTGTTTCTTTGTTTTTTCAC AGAGCTCTGTGTTGCTGGTTCTCTTTGCTTTGTGTTTCATGAGATTAAGACCCCATGGCTGGGAAATTCGCCACTGCTAA TGGGTCTATCTATGTCTGCAATTTGCCTTTTGGGACTGATGAAGATATGTTGGCTGAATATTTTGGCACTATTGGAGTAA TCAAGGTATGCACCATGTCTGTGTTTCTATTTTTCAAATTCGCGTAATCTTAGTGTCCATATTTCTTTCATTTTTTAGGG TAAAAGAAATGAACACGTTAACTCATATTTTTAATATTTGGGATTTTTATTATGTTCTGTTGTTAATATACGACATGTCG ACATTGACTAGAGATATGGCCTACTAAGTCCTTATAAATAGCAGGGAATCCTCACTTCTAAGATAGCTTTTAGGGAGTTA AGCTCAGACCTGAATTCTAAGATGTATGTTCAGGTTGGAATTTTATGTTTAGATGTAAGACGTATGCGAATAAAATTAGT TTATTTGGGATTCTCTACATGAAGACTTAAAGTGAACATTAGTTTGAGATTTTTAATGAATGATTAATTTGATTTTTGTT GTGTTTCTCTCTTGTCTTCATGTGGTTCCTGTTTTTCTGTGTGCCATGTTCTGTTTCGAAGCTATTAGTCCTAGTTCATT AAGGATTTATGCTTTGCAGAAAGATAAACGTACAGGGAGACCGAAAATATGGTTATATCGAGACAAAGAGACTCATGAAC CAAAGGGGGATGCTACTGTGACGTACGAGGATCCACATGCTGCTTCGGCTGCTGTTGAATGGTTTAACAACAAAGATTTT CATGGTAATACAATTGGAGTTTTTATAGCAGAGTCCAAAAACAAAGATGATCAAGTAGCAGATCCAGTTGTAGCTGTAGC TGTGCCTGTAGCTGTTGATGTTGTTGGTGAACTAGAGGAAACTGACAGGGATATTAATGGTGGTAGTGGAAGAGGTAGAG GTCAACATGATGCCTCAGGCAAACCCTGGCAACAAGAGGGCGATTGGATGTGTCCGAATACAAGGTCTGTGATATGAGAT TGGTGAGCAGCTCTTTCTTGCTCTTGCATTCACTGTTTCTGTCATTGTAGATGATTTGTTTTAGAGAAATAACAACTTTT TCTCATCATTGCAGTTGCTCCAATGTGAATTTTGCCTTTCGCGGTGCGTGTAATCGCTGTGGAAGTGCTCGACCTGCTGG TGCTGCTGGTGCTGGAGGGGGTGGGGGCCGTGGCAAGGGACGTGCTGGACAAGAGGCAGGTGGTATTGGCCGTCCAGCTG GTGGAGGGCTCTTTGGTCCCAATGACTGGCCTTGTCCAATGTACGATTGTGTCACACTGTCCTTGTGTTCTCTTTTCTTT TGTGTCTGGTTTCTTTATAACTAGGCTCTTTTTCTTTTTTATTTTCTTTTTGCTTAGGTGTGGCAATATCAACTGGGCAA AACGGATGAAATGCAATATCTGCAATACAAATAAGCCTGGGCATAATGAGGGTGGTGTAAGGTATTATATTTGATACTTT TGATACCTTCTAAATGTTAGTCAAAATACATATTATATCATTACCCTCATGCAACTATAAGGAGAAAATACATTTTTTTG TTGTAAAAAAGAAATATTTATTCAAACAAATGCTCTCTTTTTACATTTTTTAAAATGAATTCAAACTGACATAAAAGCTG TGATCTGTGAAACAATTTTAAAAAAGAAATTACCTTAAAATACACATGTAAGAGATAGAAATGTATGACTATGTTGAACT GCCAAATTTCCCTTTTCTTTCAATCATAATATAAAAGGCACGGGTCTCTAAAAAAGGCATGGCAGTAAGAAATCCCCTTT CTATGGTAGTAGAGATACATGTCTATGTATTTGTGTGATTATCAAATTTTATGCAGTTACACACTTACAAAAATATCTTG CCATATGTACTAAACGTGGTTTGTCTATTTCCATTGTACGTGTGATTTCATGGCAATTGAACATTTTAGTCCACTGAAAA GTAAGAAATTAGTTTTAGAGGGCTGGTATATCTATGTTAAATGTTTATTTCAATTGGTGCATCTTTTCCCGCTTAACAAT TTGATGTGTGGGAAAAATTGAAGAAGTATTATATGCTACCTTACACGATTAGACAACAACTATGGCCGTGGCCAAGTTGT AATATAAGTCACGTGAGCGAGGTCTTAATTATTGCATTGTGTTTATTTGTCATTGCAGAACAACAGTTCGCCAATAAACT TTTCAAATAGAAATGTAGCTTAGAATTTGTTCGTCAGAATATTAGGAAGATATTTTTTACTATCATTTCACATCGTAAAG CATCTTGTGATGCCAAATGTCAGCAAAGCATCTTTGCAAGCAAATTATTGAGGACATTTTTCACCATCAGTTCATATTCG TTATCCCTTGTGTGCTTTGATGAGTGTGTCTGTGTGGTTTGTATGACCATTATTTTTTATTTTGGTTCCGAACTAGAAAA TGTTGTATTTACGAGACCATAATTTCCCCCTTCATTTTGGTGTCTTCCTTTACTATGCAAAATTCCTTTTTTAGTATTAT TTTTGAAATTTCCTTGCTAACTTTGTGTTATTCTTTCTAATTGAGCAGAGGAGGGCGAGCTGGAGGTTACAAAGAGCTTG ATGAAGAGGAAATTGAAGAAACTAAACGTCGTAGGCGGGAGGCTGAAGTAAGATTGTCTAAAAGTCAGATCATACATTCT ATTAATGAGACCTTGGTTTTATAATCTTTTCTTTACTTTCAGGATGATGGGGAGCTGTATGATGAATTTGGAAATCTTAA GAAGAAATTCCGTGCTAAAACACAGCAAGCTGAAGCTGCACGTGTGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTG AGGAACTAGGTATTGTTGCATATCTTGAATGGTTTATTCTCCGTAAATTTATTAGAGCATGCTGAAGCTGCACCAGGGCT TCCTGAGCATGTCAAGCTAAACCCCCTGCATTCTCCACCTCACTTCTTTACCCACATTTTTCGTTGCATGGTTACATTTT TAAATGATCATTATGGGCCTGATGGAATTCACATTTTCAAATACACATTTTCCTAAAATCATGATTCATAATTCCATATG TCTTCTTTTTCCTTTTGTTTTTTTTCTATTTCATTTCTCTTTTTTGTCATTCTTGCTCGACAGGCCTTATGCAACCGTTT GATCATGTGACTTTTTACTTTTAAACCCTACGTACTAAATCAAAACTGCTTATAGGTTGTCTTGATGTTTTTATAAATGT ACTGGTTGATTGTCCAGATTTTTGAATTTCAATGTCCTGCATAAATCTAAACTGAACTGGTTGCTGGTTTTGCTTGTCGA TAAACGTTTAATTTAGTTGTTTACCCAACCAAACACACCCTAAATGGTTTTGTTATGGTATGAAATTCTGAATTGTTGAT GTGTTTGTATGAAATTCTGAATTGTTTGGGCCTGCCATAACTAAGTTACTGTGCTATAATACTTATGGCAGGGATTGTCA GGGATGCTAGAGAAAGAAGTAGAGACAGAGGAAGGGAACATAATGATGGAGAGAACAGGAACAACAGCAGAGAGCGAGAT GAAAAGGAGAGGCATAGCAGTCGGAACAGAGAGAGGGACAGGGGAAGAGATCGAGACTGGGATCATGTTGATCGTGATAG AGACTATGGGCGAGACCGGGATCGGGATCGGGATCGACATAGACACCGTTATTAAAAATTCTAGCACAAGTGCATTCTGA TGTTTTGATTACGATGATGAGTTGGTTCTTATGTCTGGATTTCAGTTGCTTAAATTCTTAAACTTGGTGAAAAACATCCT GCAAGCTGATGATTGCTGTTCATTTTACTTGGCATGGACCTGTTGTACAACCTAACTACCTAAGATACTCATGCTTTTGG TGTTTACATTACAAGGACATGTTCTGTTCGAGTATGTTTCACAGCAGTTTGAATCACTAGTTGTAGTCATACAATTTTTT ATATGGAGCAGTAATCTGGATGAATCAACAATAGTTCACAAGTAATAGGTTTGTTGAACTACCTGATACGACAATGATCC TTTGATTGGATGGGAATTGGGTATGCAGGGGATGGAAGGGGTTTTTAAAATCTTTTCTTGTTTGGTTAAATTTTTTGAAG GGGAGGGGATTGGAAGGGGACATGGCTAAAATACCCTTCCAACAACAATTACTCTCATGTCAAATGGGTAAATGCTCGCA CTGGTCTTTGGTCTCTAAAAGTATCATGCGCTGTCAAATTAGTCCCTAAACTAAAACAATCAATCCTGCGGACGTTCAGG TATTGTGCTTTTAGCGGACAATTGACTTGTGAAGAAGAATGAGGGAGGAAGAGACCAACCGAGGATCACGTAACAAATTT TAAACACGAATCTCAACCGTCAATGTATAATAAAAACAAGGGCT
CDS sequence (LotjaGi3g1v0525600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGGAAATTCGCCACTGCTAATGGGTCTATCTATGTCTGCAATTTGCCTTTTGGGACTGATGAAGATATGTTGGC TGAATATTTTGGCACTATTGGAGTAATCAAGAAAGATAAACGTACAGGGAGACCGAAAATATGGTTATATCGAGACAAAG AGACTCATGAACCAAAGGGGGATGCTACTGTGACGTACGAGGATCCACATGCTGCTTCGGCTGCTGTTGAATGGTTTAAC AACAAAGATTTTCATGGTAATACAATTGGAGTTTTTATAGCAGAGTCCAAAAACAAAGATGATCAAGTAGCAGATCCAGT TGTAGCTGTAGCTGTGCCTGTAGCTGTTGATGTTGTTGGTGAACTAGAGGAAACTGACAGGGATATTAATGGTGGTAGTG GAAGAGGTAGAGGTCAACATGATGCCTCAGGCAAACCCTGGCAACAAGAGGGCGATTGGATGTGTCCGAATACAAGTTGC TCCAATGTGAATTTTGCCTTTCGCGGTGCGTGTAATCGCTGTGGAAGTGCTCGACCTGCTGGTGCTGCTGGTGCTGGAGG GGGTGGGGGCCGTGGCAAGGGACGTGCTGGACAAGAGGCAGGTGGTATTGGCCGTCCAGCTGGTGGAGGGCTCTTTGGTC CCAATGACTGGCCTTGTCCAATGTGTGGCAATATCAACTGGGCAAAACGGATGAAATGCAATATCTGCAATACAAATAAG CCTGGGCATAATGAGGGTGGTGTAAGAGGAGGGCGAGCTGGAGGTTACAAAGAGCTTGATGAAGAGGAAATTGAAGAAAC TAAACGTCGTAGGCGGGAGGCTGAAGATGATGGGGAGCTGTATGATGAATTTGGAAATCTTAAGAAGAAATTCCGTGCTA AAACACAGCAAGCTGAAGCTGCACGTGTGCTTCCTGGTTCAGGGCGTGCTGGTTGGGAGGTTGAGGAACTAGGGATTGTC AGGGATGCTAGAGAAAGAAGTAGAGACAGAGGAAGGGAACATAATGATGGAGAGAACAGGAACAACAGCAGAGAGCGAGA TGAAAAGGAGAGGCATAGCAGTCGGAACAGAGAGAGGGACAGGGGAAGAGATCGAGACTGGGATCATGTTGATCGTGATA GAGACTATGGGCGAGACCGGGATCGGGATCGGGATCGACATAGACACCGTTATTAA
Protein sequence (LotjaGi3g1v0525600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGKFATANGSIYVCNLPFGTDEDMLAEYFGTIGVIKKDKRTGRPKIWLYRDKETHEPKGDATVTYEDPHAASAAVEWFN NKDFHGNTIGVFIAESKNKDDQVADPVVAVAVPVAVDVVGELEETDRDINGGSGRGRGQHDASGKPWQQEGDWMCPNTSC SNVNFAFRGACNRCGSARPAGAAGAGGGGGRGKGRAGQEAGGIGRPAGGGLFGPNDWPCPMCGNINWAKRMKCNICNTNK PGHNEGGVRGGRAGGYKELDEEEIEETKRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARVLPGSGRAGWEVEELGIV RDARERSRDRGREHNDGENRNNSRERDEKERHSSRNRERDRGRDRDWDHVDRDRDYGRDRDRDRDRHRHRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 3 | 388 | 386 | 5.8E-187 | – | |
PANTHER | 3 | 388 | 386 | 5.8E-187 | – | |
Gene3D | 9 | 94 | 86 | 2.5E-22 | ||
ProSiteProfiles | 10 | 96 | 87 | 11.998 | ||
SUPERFAMILY | 10 | 99 | 90 | 3.63E-21 | ||
SMART | 11 | 92 | 82 | 1.1E-13 | ||
CDD | 12 | 94 | 83 | 1.28731E-54 | – | |
Pfam | 12 | 89 | 78 | 1.7E-10 | ||
MobiDBLite | 123 | 150 | 28 | - | – | |
SUPERFAMILY | 143 | 181 | 39 | 8.24E-13 | ||
Gene3D | 143 | 182 | 40 | 2.9E-14 | – | |
ProSiteProfiles | 149 | 180 | 32 | 10.06 | ||
Pfam | 150 | 179 | 30 | 4.1E-6 | ||
SMART | 151 | 177 | 27 | 2.6E-4 | ||
ProSitePatterns | 153 | 174 | 22 | - | ||
SUPERFAMILY | 207 | 243 | 37 | 4.32E-10 | ||
Gene3D | 211 | 243 | 33 | 2.5E-10 | – | |
ProSiteProfiles | 213 | 242 | 30 | 9.461 | ||
SMART | 215 | 239 | 25 | 6.5E-6 | ||
Pfam | 216 | 242 | 27 | 1.5E-4 | ||
ProSitePatterns | 217 | 236 | 20 | - | ||
MobiDBLite | 244 | 277 | 34 | - | – | |
MobiDBLite | 254 | 277 | 24 | - | – | |
Coils | 257 | 277 | 21 | - | – | |
MobiDBLite | 320 | 391 | 72 | - | – | |
MobiDBLite | 320 | 384 | 65 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0525600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…