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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0528600 |
| Transcript ID | LotjaGi3g1v0528600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem II stability/assembly factor HCF136; TAIR: AT5G23120.2 photosystem II stability/assembly factor, chloroplast (HCF136); Swiss-Prot: sp|O82660|P2SAF_ARATH Photosystem II stability/assembly factor HCF136, chloroplastic; TrEMBL-Plants: tr|G7JPH8|G7JPH8_MEDTR Photosystem II stability/assembly factor HCF136; Found in the gene: LotjaGi3g1v0528600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:94540126..94544115) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGACTCTGCAATTCACCTTCACTGACCCAACCACGTTATGGAGGCCATCTCTCCCTTCTTCTTCTAGAACTTCCCA TTCTCGCAACCGCACCAGCTTCGTCGTCAAAGCTTCTTTCGACATTTCCAGAACCAGGAGACAGCTCCTCGCCGACACCG CAGCATTATCTCTGCTACTCCCTTCTCTGCCGGCGAGGTCCGACGAGGCGCTCGCTGAGTGGGAGAGAGTTTACCTCCCT ATCGACCCTGGCGTCGTGCTTCTCGACATTGCTTTCGTCCCTGAGGATCCCAACCATGGTAAGGGTACTTGCCATTTCAC TTCAAATCTTGTTTTTTCAGCTTTGAATTGCATTTCAATGGTGGGTTTGGTAGGTTTTCTTCTGGGTACGAGGCAAACCC TTTTGGAGACTAAAGATGGAGGAAACACTTGGGGTCCACGATCTATACCCTCTGCAGAGGATGAAGATTTCAACTACAGG TTTAATTCCATCAGCTTCAGAGGGAAGGAAGGGTGGATAGTGGGGAAACCTAATATTCTGCTCTACACTTCTGATGCTGG AGAAAGTTGGGGAAGGATACCACTCAGTGCTCAACTTCCTGGTGATATGGTATGGATTTTGTGCAATGCTTCTTGTTTCT ATTTCTCATTCATTCAAGTCTTGTGTATCGAATAAGTATTTCTTTGATGATCTCTTTGCATCACTCGCACTTATTGATTG AGTTGAAAATCCATTTATGTTGCTGATATAATGCAAACATACTGGAGTAATTGTCACGTTCTTTTGATATTAAAACTGCA GGTGTACATAAAGGCAACTGGGGATAAGAGTGCAGAGATGGTGACTGACGAAGGTGCAATCTATGTTACATCAAATAGAG GCTACAACTGGAAGGCTGCTGTTCAGGAAACGGTGTCAGCTACTCTCAACAGGTGAGTTTCTGATAGTCAGCAAGCTAAA CTTCATTTCGTTAAACCAGCCAAGAATGCATTGTGTAACTATGTATCCTATGTATTAATAGTGTAATGCTTTTTAAGGAT TGTGCGCCCTCTTTGAAATTATCATGTGAAACATTTGACAAATTTGAAATGTTAAAGTTTTCTTGAAGAGCTTAATTTGT ACGATGGTTTTGCGATGTTCCTGTTAGTTACCTAATTCAACTTCTTATTCATATGCTCCAAAAACTCATTTATTGTGTCA TCTGTCGCATTATCTAGCCCTACGACCAATCAGTTAACAGCCGACCACTTTATCCATTTAGATTAGACATTTATTTATGT ATGTTGCCTCTTCAGAACAGTTTCTAGTGGCATTAGCGGTGCAAGCTATTACACTGGAACTTTCAATACTGTCAATCGCT CTCCAGATGGAAATTATGTCGCTGTATCAAGTCGTGGTAACTTCTACTTAACCTGGGAGCCTGGTCAGGTGAGGCTTTTA TTACTTACACTTTTGGTGCAAGCCTGCTCTGGCATTTAAATTATGCTTAAGCTTTCAACTAAAATGAAATCATTAATGTG GAAATCTGAAACAGCTTGATAGAACACTTGGGCCTAATACCTATAATTACCCATTATAAAAGCATCTGTTAGAAGGCCCA GCACATGGAAAGTCTATACTAGGAGGAGAGTGGGGTCAGGAGGGGAGAATGCTAGCAAATTAGTGACGTGTCCCTAGATT CCAGGGAATTCTGATCTTTTGGGAAGGGAGGCTAGATGGTGGGGTCATTCATTGGTTTGTTTGTGAATTCCATCAGGAGA GAATATCTCTCTGGTAGGAGTCTCTGACTCTGGTTCAGCAGACACTTCATTGTAGAGATCTTGAGCCCTCTTTTTTCTGT TAATAATATAGAGTTCCATTGTTCTGAGTTGCTGAGTCCTATCACAGCACGTGTAAACTGGTCAGGCAGAACAGATTATA TGCAGCTACCAAACTAGTGAAGAATTGTTGCTAAAATTGTAGTTGTGGACTTTTTAAATGTGCAGGAAAATATTCACATC ATCCTTGTAAGTTGTAATATCATGGTTTGCCACATCGAAAATTATCCTAGGAACATTAACACCGGATCTTCCGGATGCGA TCAACTAAAATAAATTAACGTACTTATACTATAGTATGATGCATGGCCAAGAATTCTTGTACTCTCCACTGTAAAAGTGT TTCTTTCTTCTTTAATTATTTTCATTCAGCTGATGCAGTAGATAGGATAGACCTTATAGTAAATGATTCTACCAACCGAC AAATTCAGAAGAGATTCTCTGTTTTGCCTTTTGCACCACCATTGGTATTTGTACTTCCTCGATGCATCATGATTCAAAAA GTCATTGTAACATTTTAGTTTTTCATTGGAATGTATATCTCCATAGTGGCCTGTATAGATTACAGTTTTTCATTTAGTCA TCTGATATCATTTTGTTTGATGGTTTACCTGCACCAATAGTGCTTAATTATGATTGTTTTATTTACTTCTCAGGCATACT GGCAGCCACATAACAGAGCAGTTGCCAGAAGAATTCAGAACATGGGATGGAGAGCTGATGGTGGTCTGTGGCTTCTTGTT CGCGGAGGTGGTCTTTATCTAAGCAAAGGCACAGGGGTATTGAATTCTGGGAATATCCTTCATAGTGAATCAATATGAGA CTAGTAGTCTTCCTTTTCTCTCCTTCCAAGTTCCAAGTCAATCTGGATAATCTTATAACTCATTTCTCAAGTCTGAGATT TGCTATTAATTTTGTCACCTTTCTTCACTGGGAAACTTCCGTCTGTTTGTTCTTCATTAACAGATTCCTGTGCTTACCCT CCCTTATATTGTTTGTTAACAAGGCAACTTCTGTGTTTGTTCAAGCATCTTTCTTTCTTGCATTATCTTTCCTTGTTTGT CACATGTTTATATTGGTATGCCTTTATCCACTAAATTTTTCACATTGATATGCCTCCTGTATCCACTAGATTCATCACAT TGCTATGCTTGTATCCACTACATTCTGCATTCCCAATTCAACCACCCCTAAGTGTTTTACTTCCTATAGAATTAGGGGAA AGTGGAAAAGGACCAAGAGGGAAAACCTTTTCTAAGAAATTGCATAAAATGCTCGAAGTCAAACCATTTCGCTTCCATCG TTATTATACTTCATCTAAAAATCTTAATACTGATCGGCTAATTTCTTTTTGGTCAATCATAACCGACTTTTTATGCTTTT TGCTTGCCATAGATTTCTGCCTCGTTTTTTTTTTCTTTTTGAATTTCGTTGCTTACTCTGAGAATATTGTTTTTACCATT TCAGATAACTGAAGAATTTGAGGAGGTGCCTGTTCAAAGCCGGGGCTTTGGCATTCTTGATGTGGGGTATCGTTCAACGG TATAGTTTTCATGCATTCAGAGAGTTGCTTTATTAATTAACAAAGTCTTGCTTGTAACAGTCCTGTCACTTAATATTCTA AAGGAAATACAACATTCACATGATGATTATTGCTTCTTTACTCTTCAGTTCGTATATAATATGCTAAATTATGCATACAG GACGAGGCTTGGGCAGCAGGAGGAAGTGGTGTTCTGTTGAGAACTAATAATGGTGGCAAGTCATGGGTTCGTGACAAAGC TGCTGACAACATTGCTGCAAATTTATACTCTGTGAAGTCAGTCTAACTATTACTAGGCCCCACTTTTATATAATTACATT CATTTACTGGTGTGCATTTTAAAACCACAAATTTAGCTGTCTCCTGAACTAGACCAGGCTCAAGCTCCTCATGCTACTGG AATTCTACACTTATATTGTTCCATCTATCTTTGTGATACTCATTTTCTTTTATGTTGTTAGAACAAGATGAAAACAAAAC CCAGGAGATAAAACAGCTATACAAGAGTTATGAAGTTTATAGATCTTGTATGGTTCTTCTTCTAAACACTCTACTTGCTG CAGGTTCATTGATGACAAGAAGGGATTTGTATTGGGGAATGATGGAGTCTTGCTTCGCTACCTTGGATAG
CDS sequence (LotjaGi3g1v0528600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACTCTGCAATTCACCTTCACTGACCCAACCACGTTATGGAGGCCATCTCTCCCTTCTTCTTCTAGAACTTCCCA TTCTCGCAACCGCACCAGCTTCGTCGTCAAAGCTTCTTTCGACATTTCCAGAACCAGGAGACAGCTCCTCGCCGACACCG CAGCATTATCTCTGCTACTCCCTTCTCTGCCGGCGAGGTCCGACGAGGCGCTCGCTGAGTGGGAGAGAGTTTACCTCCCT ATCGACCCTGGCGTCGTGCTTCTCGACATTGCTTTCGTCCCTGAGGATCCCAACCATGGTTTTCTTCTGGGTACGAGGCA AACCCTTTTGGAGACTAAAGATGGAGGAAACACTTGGGGTCCACGATCTATACCCTCTGCAGAGGATGAAGATTTCAACT ACAGGTTTAATTCCATCAGCTTCAGAGGGAAGGAAGGGTGGATAGTGGGGAAACCTAATATTCTGCTCTACACTTCTGAT GCTGGAGAAAGTTGGGGAAGGATACCACTCAGTGCTCAACTTCCTGGTGATATGGTGTACATAAAGGCAACTGGGGATAA GAGTGCAGAGATGGTGACTGACGAAGGTGCAATCTATGTTACATCAAATAGAGGCTACAACTGGAAGGCTGCTGTTCAGG AAACGGTGTCAGCTACTCTCAACAGAACAGTTTCTAGTGGCATTAGCGGTGCAAGCTATTACACTGGAACTTTCAATACT GTCAATCGCTCTCCAGATGGAAATTATGTCGCTGTATCAAGTCGTGGTAACTTCTACTTAACCTGGGAGCCTGGTCAGGC ATACTGGCAGCCACATAACAGAGCAGTTGCCAGAAGAATTCAGAACATGGGATGGAGAGCTGATGGTGGTCTGTGGCTTC TTGTTCGCGGAGGTGGTCTTTATCTAAGCAAAGGCACAGGGATAACTGAAGAATTTGAGGAGGTGCCTGTTCAAAGCCGG GGCTTTGGCATTCTTGATGTGGGGTATCGTTCAACGGACGAGGCTTGGGCAGCAGGAGGAAGTGGTGTTCTGTTGAGAAC TAATAATGGTGGCAAGTCATGGGTTCGTGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCTGTGAAGTTCATTG ATGACAAGAAGGGATTTGTATTGGGGAATGATGGAGTCTTGCTTCGCTACCTTGGATAG
Protein sequence (LotjaGi3g1v0528600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLQFTFTDPTTLWRPSLPSSSRTSHSRNRTSFVVKASFDISRTRRQLLADTAALSLLLPSLPARSDEALAEWERVYLP IDPGVVLLDIAFVPEDPNHGFLLGTRQTLLETKDGGNTWGPRSIPSAEDEDFNYRFNSISFRGKEGWIVGKPNILLYTSD AGESWGRIPLSAQLPGDMVYIKATGDKSAEMVTDEGAIYVTSNRGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNT VNRSPDGNYVAVSSRGNFYLTWEPGQAYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSR GFGILDVGYRSTDEAWAAGGSGVLLRTNNGGKSWVRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRYLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 27 | 392 | 366 | 1.1E-217 | – | |
| PANTHER | 27 | 392 | 366 | 1.1E-217 | – | |
| PIRSF | 38 | 392 | 355 | 7.1E-147 | ||
| Pfam | 70 | 390 | 321 | 1.1E-122 | ||
| SUPERFAMILY | 74 | 391 | 318 | 1.57E-50 | – | |
| Gene3D | 127 | 367 | 241 | 1.0E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0528600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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