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IPR028203 is a Photosynthesis system II assembly factor Ycf48/Hcf136-like domain.
<p>This entry represents a domain found in the photosynthesis system II assembly factor YCF48/HCF136 and associated proteins.</p> <p>The photosynthesis system II (PSII) is a multi-subunit pigment-protein complex responsible for water oxidation during oxygenic photosynthesis [[cite:PUB00067686]]. PSII can be found in the thylakoid membrane of chloroplasts and cyanobacteria. Its assembly is regulated by PSII assembly factors including Ycf48/Hcf136, Psb27 and Psb28. Ycf48/Hcf136 contains the BNR repeats and can be found predominantly in the thykaloid membrane. Ycf48/Hcf136 is required for assembly and repair of an early intermediate in PSII assembly that includes D2 (psbD) and cytochrome b559 [[cite:PUB00067686], [cite:PUB00067687]]. This domain can also be found in some YCF48-like proteins that may not affect PSII activity.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Photosystem II stability/assembly factor HCF136 [Medicago truncatula] gi|357473927|ref|XP_003607248.1| | 8 | ||
| – | Photosystem II stability/assembly factor HCF136 [Medicago truncatula] gi|357473927|ref|XP_003607248.1| | 6 | ||
| – | Photosystem II stability/assembly factor HCF136; TAIR: AT5G23120.2 photosystem II stability/assembly factor, chloroplast (HCF136); Swiss-Prot: sp|O82660|P2SAF_ARATH Photosystem II stability/assembly factor HCF136, chloroplastic; TrEMBL-Plants: tr|G7JPH8|G7JPH8_MEDTR Photosystem II stability/assembly factor HCF136; Found in the gene: LotjaGi3g1v0528600 | 9 | ||
| – | Photosystem II stability/assembly factor HCF136; TAIR: AT5G23120.2 photosystem II stability/assembly factor, chloroplast (HCF136); Swiss-Prot: sp|O82660|P2SAF_ARATH Photosystem II stability/assembly factor HCF136, chloroplastic; TrEMBL-Plants: tr|G7JPH8|G7JPH8_MEDTR Photosystem II stability/assembly factor HCF136; Found in the gene: LotjaGi3g1v0528600 | 7 | ||
| – | Photosystem II stability/assembly factor HCF136; TAIR: AT5G23120.2 photosystem II stability/assembly factor, chloroplast (HCF136); Swiss-Prot: sp|O82660|P2SAF_ARATH Photosystem II stability/assembly factor HCF136, chloroplastic; TrEMBL-Plants: tr|G7JPH8|G7JPH8_MEDTR Photosystem II stability/assembly factor HCF136; Found in the gene: LotjaGi3g1v0528600 | 9 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| SSF110296 | SUPERFAMILY | 1 | 20.00 |