Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0540700 |
| Transcript ID | LotjaGi3g1v0540700.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Prohibitin, putative; TAIR: AT4G28510.1 prohibitin 1; Swiss-Prot: sp|O49460|PHB1_ARATH Prohibitin-1, mitochondrial; TrEMBL-Plants: tr|I3SJG9|I3SJG9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0540700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:95795166..95796999) extracted from Lotus japonicus Gifu genome v1.2.
TTCAAGAACGTCAATGTCCCAAAGGTTCCTGGCGGTGGAGTTGCTGCTTTGCTCAAAGTCAGCATTATCGGTGGGCTTGT TGTGTATGGGGCTACTAACAGCTTGTACAATGTTGAGGGTGGTCATCGTGCCATTGTCTTCAACCGTATTATCGGTGTCA AAGATAAGGTTCATCATAGTTAGATAGATAATTAGACCTATGTTGAATGAATAGTAACCTTGTTGCATAATATCAATTTC TTATCCGCAGGTCTATCCTGAAGGAACACATATCATGATTCCTTGGTTTGAGAGGCCTGTCATTTATGATGTTCGTGCAC GACCTCATTTGGTCGAGAGTACTTCAGGAAGCCGCGATCTCCAAATGGTCAATCTCAACTCTCAACTTGTTCACCCATTT CCCCCTTTTATTTGAACCATTACATTCTACCACTATGATATTCTATATTTATGGTGGAATTGTTAATACTTTTGTTATTA GGATCATGCAAAAAGCTTTACTCTATTTGTGTATGGACAGTTTTTTCAGTTCTCTTGACTCTTCATTCTTATTCGATGCA GCATAGACCACGGTGGTTTTACTACATTTTCCATTGACCATAGATCTTTTGTTTTGCTAGGTGAAAATTGGACTTAGGGT CCTTACCCGTCCTCTACCAGACCAATTGCCTACCGTTTATCGTACTCTGGGTGAGAATTATAATGAAAGGGTCCTACCTT CTATTATACATGAAACTCTCAAAGCTGTTGTTGCACAGTATAATGCCAGTCAGCTCATTACCCAGAGAGAGGTTAGTATT TACAAAGATCCTCCGCTATCTTCTGCTCAATTAGTAACTGGATTAATTTTTACTATGCCTCTTTATTCCTCAGTTGGGAT TTGTATTCTTTGAAATCAAGTGAATTACAACCTTATGGTTGAGACTGATTATTTGTTAAACGTGCTATTGTACAGAATGT TAGTCGAGAAATAAGGAAGATATTGACTGAAAGGGCCTCCCAATTTAATATTGCTTTGGATGATGTTTCAATCACAAGTT TGACGTTTGGGAGGGAATTTACAGCTGCAATTGAAGCCAAGCAGGTTGCTGCTCAAGAAGCTGAGAGAGCTAAATTTGTT GTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTCATTAGAGCACAGGTAAAATACTAACCCACCCCTACATTTATGAT GGTCATTACTATCTCTAGAAGTTACTTGCCATGCTTCAATGATTTCGGAATTGGAATTGCTACTAAACCATACAAAATAA AATAAACAAAGAAAGTGAAAGGAATAATCGTTTTTAAGGTATTTGCTGATTGTCCTGCTTGAGTGGTACATCTTGACTGT TAATTATAACTATTGTTGAACTTCACCAACACTGAAGAATTATGAACGAAGCTTCTACTCCTGCTTCCTCCCTAGCTTTT TTTTCTTTTCTTTTTAATTGTCCTGTCCTGTCTGTAACTAGTAAATAGTAATGTATGGATAAGCTATCCAGAAAGGAAGT TAAATTTCTTTCAGCGTGACGCCATAGTATTTTTTTCTACGAAACAATATAGATGGCTGCTTTTACAACTCATCATTATT TGATGTATTCCTTATTTTTTATTACTTTTTGACAAACAGGGTGAAGCCAAGAGTGCCCAGTTGATTGGTCAAGCGATTGC CAATAATCCTGCATTTATCACCTTAAGGAGAATTGAAGCTGCTAGGGAAATTGCTCATACAATTTCAAATTCTGCCAACA AGGTTTACTTGAATTCGGATGATCTCCTATTGAATCTTCAGGGGTTGAAGTTGGAACCTGTTGGGAAGAGATAG
CDS sequence (LotjaGi3g1v0540700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCCTTGGTTTGAGAGGCCTGTCATTTATGATGTTCGTGCACGACCTCATTTGGTCGAGAGTACTTCAGGAAGCCG CGATCTCCAAATGGTGAAAATTGGACTTAGGGTCCTTACCCGTCCTCTACCAGACCAATTGCCTACCGTTTATCGTACTC TGGGTGAGAATTATAATGAAAGGGTCCTACCTTCTATTATACATGAAACTCTCAAAGCTGTTGTTGCACAGTATAATGCC AGTCAGCTCATTACCCAGAGAGAGAATGTTAGTCGAGAAATAAGGAAGATATTGACTGAAAGGGCCTCCCAATTTAATAT TGCTTTGGATGATGTTTCAATCACAAGTTTGACGTTTGGGAGGGAATTTACAGCTGCAATTGAAGCCAAGCAGGTTGCTG CTCAAGAAGCTGAGAGAGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTCATTAGAGCACAGGGT GAAGCCAAGAGTGCCCAGTTGATTGGTCAAGCGATTGCCAATAATCCTGCATTTATCACCTTAAGGAGAATTGAAGCTGC TAGGGAAATTGCTCATACAATTTCAAATTCTGCCAACAAGGTTTACTTGAATTCGGATGATCTCCTATTGAATCTTCAGG GGTTGAAGTTGGAACCTGTTGGGAAGAGATAG
Protein sequence (LotjaGi3g1v0540700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPLPDQLPTVYRTLGENYNERVLPSIIHETLKAVVAQYNA SQLITQRENVSREIRKILTERASQFNIALDDVSITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQG EAKSAQLIGQAIANNPAFITLRRIEAAREIAHTISNSANKVYLNSDDLLLNLQGLKLEPVGKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 223 | 223 | 6.4E-147 | – | |
| SMART | 1 | 131 | 131 | 1.3E-22 | ||
| PANTHER | 1 | 223 | 223 | 6.4E-147 | ||
| CDD | 1 | 165 | 165 | 1.05404E-73 | ||
| SUPERFAMILY | 2 | 138 | 137 | 2.35E-16 | ||
| Pfam | 2 | 149 | 148 | 2.5E-19 | ||
| Gene3D | 12 | 133 | 122 | 6.8E-6 | – | |
| PRINTS | 14 | 30 | 17 | 1.7E-65 | ||
| PRINTS | 32 | 51 | 20 | 1.7E-65 | ||
| PRINTS | 55 | 73 | 19 | 1.7E-65 | ||
| PRINTS | 78 | 94 | 17 | 1.7E-65 | ||
| PRINTS | 101 | 120 | 20 | 1.7E-65 | ||
| PRINTS | 126 | 149 | 24 | 1.7E-65 | ||
| Coils | 130 | 150 | 21 | - | – | |
| PRINTS | 149 | 165 | 17 | 1.7E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0540700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…