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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0009600 |
| Transcript ID | LotjaGi4g1v0009600.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dehydrogenase/reductase SDR family member 4; TAIR: AT4G05530.1 indole-3-butyric acid response 1; Swiss-Prot: sp|H9BFQ2|TPRL3_ERYCB Tropinone reductase-like 3; TrEMBL-Plants: tr|I3SY67|I3SY67_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0009600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:1276022..1277931) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAATACCGAAAAGGTTTCGAGGCAAGGTGGCGATCGTGACCGCTTCCACCCAGGGAATTGGCTTCAGCATAGCTGA GAGGCTTGGCTTGGAAGGTGCATCTGTTGTCATCTCTTCTCGCAAACAGGTTCGTTCATTCTTCATTTTTCTAGATTTCG TTCATCTTGAGAAATTGATAAGAGAAAAGCTAATCGTTAAATTATAAGACTGGTTGTGTTTTGTATAAATTGTAAGCAAT CACCAACTAACTAATCAAGTGAGAGTGATGCTTCTGTACACAATTACACATGATTGTTCATCACTGTAACGTTTATTTTG GCTGAATCAACTGCAGCAAAATGTTGATGCGGCTGCGGAAAAACTCAGGGCTAAAGGAATTGATGTGTTAGCAGTTGTTT GCCATGTTTCTAATGCTCAACAAAGGAAGAATTTGATTGACAAAACTGTGCAGGTCAGGTTTTCTTCAGATTAACTATGG AATTTATATAACAACATGATTTTTTATCATGATCATTGATCAATAGGCTAGACTGAGGCTTGGCCTTGGTTTCTCGCAAC GCTTCAGTATAATCAGCTTGTTATTTTTTGAAAAATCTGTCTGAATGCTGTTCTAATATGTTGTCGAACATTTTGGTTTG TTACAGAAGTATGGCAAGATAGATGTTGTTGTGTCCAATGCTGCTGCGAATCCTTCTGTTGATGCCATTCTGCAAACAAA GGACACGGTTCTTGACAAGTTATGGGAGATAAATGTCAAAGCCTCTATACTTCTTCTCAAGGTAATTAACCTGTGAAATA CCTAAAACAAAAAGAAAAGAAAAGAAAAAATCCCATATATGTTTCAGCATTTTCTCTTTCTGCCATCTCCATATGGTGTG TGTATATTATAGTTGTGGTGTACTATGTGTTATTCACTGTGCTGTTTATACAGGATGCAGCTCCTCACATGCAGAAAGGT TCTTCTGTAGTTATCATTTCCTCAATTGCTGGTTATAACCCACCACCTGCTATGGCTATGTATGGAGTAACCAAAACAGC CCTTCTAGGACTTACCAAAGTGAGTAATTCACTTGCAATTGTTCCTTCAAAAACTACATAAACTGTTACCATCTTTTTTC AATATGCTAATCATTCATAATGTGTTGTGTAGGCCCTGGCTGGTGAGATGGCCCCGAACACTCGTGTAAACTGTGTTGCT CCTGGTTTTGTGCCAACTAATTTTGCATCATTCATTACCAGTAATGATGCTATGGTGAGTCTCTTATGGTCCAAATAGGT TTTTCTTCGTGCACTCAATTCTCTTGCCCCATGTTTGGATCAACTTATTTTTTCGTCAAAATCAATTTTGAAATCTAGAC TACTCATGTAAGTTTCTGAAATGAGAACTGCTATTTCTTACGAAGACAGTCAGGCATGAAATTCAAGACCAAAAAATTTA ACCAATGAAAACATTGTGAAAATGATAAGTTCCTATTTTGACGGAAAACACTCTGGTTAATTGAAAGACACGTTGTTAGT TTTTCTTTCGTATGCCACTTATTCATAACAGCAAGCATTACTGTTCTTAAATCTACATGGTGGATTTTCACATTAGAAGG AGAATTGATTCTGGGAGAAGCTACTCCTAGGAGCAAAATTGATTCTGGAAGATTTGAACGTGAATCCAAACATGCTTTTA GAATCCATGTAGAAGATTTTCCAAATATGCAGACTCTTTCAATTGTCTTTTGAATGGAATTTCTTTGTGTACTACTTCAG AGACAGGAACTTGAAGGGAAGACAATACTTGGAAGGCTTGGCACAACTGAAGACATGGCTGCTGCTACAGCTTTTTTGGC ATCTGAAGACGCTTCTTATATAACCGGAGAAACTTTAGTAGTTTCTGGGGGAATGCCGTCCAGGCTGTAG
CDS sequence (LotjaGi4g1v0009600.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATACCGAAAAGGTTTCGAGGCAAGGTGGCGATCGTGACCGCTTCCACCCAGGGAATTGGCTTCAGCATAGCTGA GAGGCTTGGCTTGGAAGGTGCATCTGTTGTCATCTCTTCTCGCAAACAGCAAAATGTTGATGCGGCTGCGGAAAAACTCA GGGCTAAAGGAATTGATGTGTTAGCAGTTGTTTGCCATGTTTCTAATGCTCAACAAAGGAAGAATTTGATTGACAAAACT GTGCAGAAGTATGGCAAGATAGATGTTGTTGTGTCCAATGCTGCTGCGAATCCTTCTGTTGATGCCATTCTGCAAACAAA GGACACGGTTCTTGACAAGTTATGGGAGATAAATGTCAAAGCCTCTATACTTCTTCTCAAGGATGCAGCTCCTCACATGC AGAAAGGTTCTTCTGTAGTTATCATTTCCTCAATTGCTGGTTATAACCCACCACCTGCTATGGCTATGTATGGAGTAACC AAAACAGCCCTTCTAGGACTTACCAAAGCCCTGGCTGGTGAGATGGCCCCGAACACTCGTGTAAACTGTGTTGCTCCTGG TTTTGTGCCAACTAATTTTGCATCATTCATTACCAGTAATGATGCTATGAGACAGGAACTTGAAGGGAAGACAATACTTG GAAGGCTTGGCACAACTGAAGACATGGCTGCTGCTACAGCTTTTTTGGCATCTGAAGACGCTTCTTATATAACCGGAGAA ACTTTAGTAGTTTCTGGGGGAATGCCGTCCAGGCTGTAG
Protein sequence (LotjaGi4g1v0009600.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIPKRFRGKVAIVTASTQGIGFSIAERLGLEGASVVISSRKQQNVDAAAEKLRAKGIDVLAVVCHVSNAQQRKNLIDKT VQKYGKIDVVVSNAAANPSVDAILQTKDTVLDKLWEINVKASILLLKDAAPHMQKGSSVVIISSIAGYNPPPAMAMYGVT KTALLGLTKALAGEMAPNTRVNCVAPGFVPTNFASFITSNDAMRQELEGKTILGRLGTTEDMAAATAFLASEDASYITGE TLVVSGGMPSRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 249 | 249 | 1.5E-75 | – | |
| PANTHER | 4 | 252 | 249 | 1.9E-133 | – | |
| PANTHER | 4 | 252 | 249 | 1.9E-133 | – | |
| SUPERFAMILY | 8 | 248 | 241 | 6.91E-76 | ||
| PRINTS | 11 | 28 | 18 | 7.3E-35 | ||
| Pfam | 19 | 248 | 230 | 3.5E-60 | – | |
| PRINTS | 85 | 96 | 12 | 7.3E-35 | ||
| PRINTS | 85 | 96 | 12 | 1.0E-6 | ||
| PRINTS | 131 | 147 | 17 | 7.3E-35 | ||
| PRINTS | 137 | 145 | 9 | 1.0E-6 | ||
| ProSitePatterns | 144 | 172 | 29 | - | ||
| PRINTS | 157 | 176 | 20 | 7.3E-35 | ||
| PRINTS | 157 | 176 | 20 | 1.0E-6 | ||
| PRINTS | 177 | 194 | 18 | 7.3E-35 | ||
| PRINTS | 212 | 232 | 21 | 7.3E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
Expression pattern of LotjaGi4g1v0009600.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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