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LotjaGi4g1v0025400.1

Overview

Field Value
Gene ID LotjaGi4g1v0025400
Transcript ID LotjaGi4g1v0025400.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description CAS1 domain-containing protein 1; TAIR: AT2G34410.1 O-acetyltransferase family protein; Swiss-Prot: sp|Q66GQ5|RWA3_ARATH Protein REDUCED WALL ACETYLATION 3; TrEMBL-Plants: tr|A0A1J7HEI2|A0A1J7HEI2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0025400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:3104949..3112558) extracted from Lotus japonicus Gifu genome v1.2.

CAACAACTCACAACTACAACCTCCGATTCTTTCACTCTCAAAACAATCCTTTTATTTTGCTCCTTTGAATCACCCATATA TCAATAACTCACAACTACAACTCTGATTCCTTCGCTCTCGAAACAATCTTTTTAACTCGCTCACTCTTAACAACAACCTT CAAATTTAGTATTAAAAGTTGAAGAGCAACTTTAAAAAGCAAAACAAACAAAAAGGAAGTTGTGGAGAGATTGAATCCAA GAAGGCATTTCATGCTTTAACTAGACCCACCAATCATCTCAAGCTCATCAAACACTAGTAGTTGGGATATGGTGGGTTTT TATAACGTGTTAGTTACCAAAGCATTTTATTTTATTTTAAGCAAGCTAGGAAAAGAATGTAGCAACAAACTAAAAGGACA CATCAAATCAAAGTATCACAAAAACAAAGAGTTACAAATATTCACAAACCCATTATTGAATTGAATTGAATTCAATCAAA TACTCAATACTCATATATATCTTCTATCTATCTATCTTGAAATGCAAAGAACAGAACAAAAGAGCTTTCTCTCTTCTTCC TTCTTCCAAGTCTTGTTCAACCACTGAGAGAGAGACACCCCCTCCGACATTTTCTCTATTCTTCAAGCAAACTCTTCTTC GTTTTCAGATCTCACTCTCTCTCTTCTCTCTCTCTCTCTCTCTAGGGTTTCTCTCTGCTATTTATGATCACTCTCTAACA CGCTTCTTCACCCCAAACCAGGTGCTTCCATTTCCATCAATCTTGGTAGATATCGATCGATGCTGTTCTCAGATTGATTT CGAATCTCAATTTCCCAATGCGCTGTTCTCATTCTTGTTTTTTTGCTTGCAGATTCGAGCGGTTTCATGGGATCGGAGAT GGTTGATGCGGGGCCAGTCACGCCGGGGCAGGTGCGTGGTTGGTTACTATATTTGCTTAATTCCATGGTTGAATCCAGAG CTTGTTGTAGTTGATTGCATGCAGTGGCTGATCAGTGATGAATTGGTTTTGTTGATTTCGGATAGTTCTGTGTTGTGAAT TGTGATTCTCCTGATCTGCTTGTTTGTGGCGGTGTTGTTGATAGGGAACTGTTTCATGTTGGAAAATAGGCTCAATTGTG TGAAAACTGAAAACTCATGGAAATTCTTCATAGTTGATGAGTTGAGTGCTAAATCTATAGTGGTTATGATGTTACTGGTT TGCATTTCACCTAGGATCTAGTGTTGATGATTGATTTTTTTTTTTTTTTATCTGAAGCTATATGATAAACCTGCATTTGT ATCATTTGTAAATTCTATTACATGCAAGCCAATTTCCGTGCTGTTCACCAAAATTTGAGCATACTGACTTGGAGTATAAG TTAGTTACTTCTTATTTATTTCTGTGATGTTGTTTGAAGGGGGAATAAGGAATTTATGATTTGGTCAGTTCAGTGATTGG ATTATTGTGTGATGGGCTTCTTTTTGTGGTTTTGATTGTTGATGTGAATATTTATTATGCTAATATTTGGGATGATCTTG CCAATTTTCTTATGGATCTTTGCTTATTTTGCCTTCAGGTGTCTTTCCTGCTGGGAGTTATTCCAGTTTTTATTACATGG ATATATTCAGAGTACTTAGAGTACAAAAAAACTGCATTTCCTCCCAAAGTGTAAGTTGTTAGCACTGTTGTTGCAAAACA GATCATTGGCTTAAACTGTTTGGGTTTCATTAGGTCTTAAAGTCTGTTTCATCTTGTGATTGAATTGATGTACGTGAAGA GGGTGATCATGATGTAGTAGATTGCAATGGTATTAATGCATAGAAATCTTGTAGTGGCACTTGATGGTACAGCAATGTTG TAATCTGCATCAGTAAAAGAAAAATCTTTTAAATAGGTATAGTTGAGGTATTTGGGAAACAGTAGTGGTTCAGAAATCTG GTAACAGCATTTAAAATAAAGTATACAGCACCCATTTTGTTTACGGGTCTGAAACTGCACTTGCCCCTTTACTTGAAACA CATAATAATATGTACTTTACCAACTGGATACTTCATATTAGTATATTTGGAAAAAATGGAGATTAACATTTAATAAACAA TCACATGCTTCTTAAAGCTTTGAACTTTGGATAAAAACCCCAGTAGTGTTTAGTCTAGCTAACATACATGAACACTTCAT GTCTGATATACGCATCAAAATTACTTGTATTATGCAATCAAAGTTGTTGAAACATTGAGAATTTGGCATCATAGAATTGC ATATTGTGTGCATAAAAGTATTTATCTGCAAATATTTTCTGATGCTTAACAAATTCTCCTGATGGGCTGCAGTCATTCAG ATACTAGTCTTGATGAGTTAGGGAAGGATGCAATCAAGGAGGATGATCGGGCCATTTTGCTGGAAACAGGGCTTCCAAGA TCAGCATCAGCAAAACTCCATGCATCATCTGTCAAATTGAATTTGATTCGGTCATTTTCTATGATACTCAATGTCAAGGG ATTCTTTTCAGTTTAATACTTTTATCTTTGAAGATTCTTACCTTATTACTTGTTCTGTTTAGGTTCTTGACTATGGATGA TTCTTTCTTGCTAGAAAATCGAGCAACTTTGAGGGCAATGTATGTCATTTTTATTTGAACGACTCATGTTATATGTTCCA CTCCTTCCGAATTCTGAAAACTTAAAACCCATTTTGTAGGTCTGAGTTTGGGCTGATTCTGTTTTATTTCTACGTATGTG ATAGAACCTACATACTTGGAAATTCTACCAAGGTACTTGAATACCAATTATATATTTCTGCCTGTTTTTGTTTCAAGCTG CAACTTGAAATATTATTATACTTGTATAGAATTTAGATATGTGCTGTGACACGGGCTTGATTTGGAATACATATATCACC TGTATATAAAGACATTTTATTCAAGGAGCAGCAGTGTATTACATATTTAAACCATTATATGATTAAAAAATTGCCATTTG TAGTAACTTTTTTGTTTTTACTTTCTTTTCCTTCTTTCTTTTCTTTTGACAGAATTACAACCGGGATCTTTTCTTGTTCC TCTACCTTCTTCTGATCATAGTTTCAGCAATGACTTCTTTGAAAAAACATACTGACTCATCGGCATTTTCTGGAAGAAGC ATACTTTACCTTAATCGGCATCAAACAGAAGAATGGAAAGGATGGATGCAGGTGGGTGCTCCTTTTGACTGATGTGAAAA CTTGTAAATAGAGATGTTATACCTATGTTCGCTTCCCAAAAAGTTATGGTTAAAGTATTAGCATGACCTTTTCTTTTCAT TTATAATTTAGTTTGAAACTAGCGTTGTTTTACTTGCTACAACTTGCCAACTGTGAAAAATTATCTGTTTCATTTTGATG TCTCATTTTTTTTTACATTTGTAGTTCATTGATTATAATTTATAGGCAAAACCATCTAGAGAGATATAGAGGAAAGTGGC CTATCTTAAAACTCAATACATGTTCGTCATTATGGCATTGTTTTGTCCATGTAGCCGGCCCTATCTTATAGGAAAGGATT TGATTGTTGTTGTGGTTTATGTATTATAATTGATATGTTAGCGGATGCCAAGTAGAAACTGTGGAATACTGGATCTATTT GATGTTATGTAATGGAAATCAAAGCTTTTAGTTATTGAAATGAAACTAAAGTCAATGCAGCTTAAAGTAGTTGTACTGCA TATTACATTCAAATGCCATAATGCATCCAAAATGTTTTGAATTTGTCAGATACCTATAACTATTGTTCATATTTTTGTTC CATTTTCCAGGTCCTCTTTCTAATGTACCATTATTTTGCTGCAACGGAGATATACAACGCAATACGTGTTTTCATTGCAG CATATGTTTGGATGACTGGATTTGGCAACTTCTCCTATTATTACATCAGAAAAGATTTTAGCCTTGCACGCTTTGCTCAG GTAACATAGAGTTCTTGACCTTGAATATGATTTTTATCTTATGCACTATGTACTCTGAACCCTATACTCTTTTTGCCCAT ACAATATCCCTAACTCATTAAACTGTGGTGCAGATGATGTGGAGGCTTAATCTTTTTGTGGTCTTCTGTTGTATTGTTCT TAACAATGACTATATGCTATATTATATATGTCCAATGCACACGCTTTTCACTTTGATGGTGTATGGAGCATTGGGTATAT ATAGCAAGTACAATGAAATCAGCTCGGTGATAGCTGCAAAGATTCTGGCTTGCTTTCTTGTGGTGATCTTGGTTTGGGAA GTACCTGGAGTCTTTGACTTAATCTGGGGCCCATTTGCAATCTTTTTGGGTTAGTACGATACATAATAGTTTTCTTCTGT ATAATTAGCTTGCCTAGGTATATTTGTTTTGTTGTGACTTTTTTTACTGAATCATCATACCTGAGCTTGCCAGCTGGTTT CATGCTAAGTCTTGAATCAGTTTTTTCCCACTTGTGGCCACTATTTTGGGATTTGAACGGTTTTATTGTCTTTGAAATTG TGGAATGTGGAGGCCTCCTCCTCTTGTTGATTGTAATTATTGCCAATGTCATAAAAAAACATTGTTGCTAAAATGACCAT ATATTTATTTTTAGATACTTTCTTACATTAAAAAAATTGCAGACACTCTCACACTCGAGCAAATACTTCAGTACTTCTGT AGTGCCTTAGAATACTCAATGCTCCCTTTCTCACATACAAACAGTTATTTCCCACTTTTATTTAAAAAAATATGAGCCAA TGACTAATCATAAAAGGTGGCAGCATTATAGATAATGTAGTGTGTACTATTGTAGCACTGGAGAAAAAAATTCCTCAAAC TCTCTCAGTGCAAGCTTTTGTATGTAGTGTTTATGCAAGTTTCAACTTTCAAGTTAATTTGCCAATATACATGCTTTTTG CTGCAAGTGCATAATAGTAATCTTTATATGGCAGGTTATACGGATCCTGCAAAGCCTGATCTCCCTAGAATGCATGAGTG GCATTTCAGATCTGGGCTTGATCGCTACATATGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATGTAATCTCAT GTACTAGCTTGTGTGGTGGGTACTGAATATTTTTTAAATAATATCCAGAAATTTTAAATTTTAAATATTTTACTATTTCA GGTTGAGAAATGGATGGAAAAATTGGAAGAGTGTGAATCCAAGAGGAGAGTAGCAATCAAAACCAGCATTGTTTCAGTTT CTGTATTTGTGAGTTACATGTCTTTTGACAAAATTATTGCTTGGATTACTCATGGTTTTCGCTTCTCTTTTTATGTTGTT ACTTCAATTTTCTCTGATGTAGATAAAAAAGGGTAAACAAAAAAGTTAATTTTCATCTTTCTTTTCTAGGTTGGGTACTT GTGGTATGAATACATATACAAGCTGGACAAGGTTTCATACAACAAACTCCACCCCTACACCTCATGGATTCCTATTACGT GGGTGTTATCTTCTTCACTTTTACCTTTTTTCCAATTCTTTATGTTTTTTTTTTTATTTGTGTTTCCTTCCTTTCAGCTT GAAAGATAGCAATCCTAGAACTGCTATTGATCTTTTTTTTAATTTTTTTTTTCAGTGTTTACATTTGCTTGAGGAATTTC ACTCAGCAGTTTCGGAGTTTCTCTTTGACCCTCTTTGCGTATGTGTTCATTATCTTAATCATTGAAATTCCATGTTGATT GGTTTTGACACCAACATTTCTACTAATTTCCATTTCTTAATATCTCCATTTCTGTATGGATTTTCAGGTGGCTTGGCAAG ATTACTTTGGAGACTTACATTTCACAGTTTCACATTTGGTTGAGGTGTGTATGCATATCGATTGTTTTTGTTCACAGCTA TTTACTAAGCCTCAATTATGTTATAATTATGAGAGTAGGTTTTGGTTTTCTATTACATCGGGCTATGTGATGCCAATATA CATTAGCAATTCTGAAAGAGTTATCCTCAATCCTCAAATCCTTTCATGTGCTCTTTCATACGTCCGTTTATAGATCCAGT CATCCAGCTCAATAAACTTTGGAGTCAGCTAATTTTTTTGATTTCTAGATCATGGATTCTTGTCAATAGTGGCTGAACAA GATGTGTTCTTGATAACTTCCTCTTTGCATGCAGGTCGAACACGCCCAACGGACAGCCCAAGTGGCTTCTTTCTCTTATC CCAGAGTATCCTATGCTGAACTTCATGCTTACTACTGCTATATACGTCTTGGTATGGATCTTCTTTCCTTCTTTCTTCTG TTCATATTTTATTTTCCTTATGGGTCTTGTTAATGTATGTTAAAGAATCAAGAAATAGAAAATATCTATTGAAAGTAAAG CATTCAATACATTGATAAGGTTAAAGAGTAGTACTTTTTCATAAATACTTCCACTTTTGACTCCTTAACCAGTGTCCTTA GGGCAATTTTTACCATTTGTCTTGTTTTATTTATCTTCAAGTCTCATGAAAGGTTCCATACTAAATTACAATTTTTGTTC TGATCTGCTATGTTGAAATGGTTTTGCAGGTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGGCAGTATTCATA CCCACAAAGGACAATCGGCGGCTGCTGCATAATTTTATTACTGGGGTGGCCATCTCTGTTACCTTGTATTGCGTCTCACT TATTCTGCTTCAGATTCCTCATTCAATGGTAAGTCTTTGTTTTCTATATAAAGGGTTTATGGAAAGTCTTGGGGAGGGAT AATTACATAGTGTCCGGGGTGTTTTTTTTATGTCCCTTTAATGCCTTGGCAATGAGTAATTGAGTATCAAATTAAGTTTT CTAATGTTTGTATTCTTAATAATTGGAATTCTTTTTCACACTGATAGGCTTGAAATTGAACACCGAAGAGAGTTTATTCA TGATTCCCTTTGCATTGTCTGTGCTGAAAAGAAGCTAGGTGGATAAAAATAAGAATACATGGAAATGTGGGATCTCATTT TTTGGAGCCGTGTTTGTATAGTTGTCGGAAGTAGTATCCTCAATCACTGCATCAGATATAAACACATTGGTGCTGGTTTA TGTTGGGAGGTTGGATGATTAAGAGGGGGGATTAAACCCAAAGGAGTTTAGACCAGTTTTCTGTAGCTTCATTTGTTCTC ACATATAAAGGAGAAAAGGTAGGATCGTTTTACATGAAGAAATTCAAGATTCGTTAACAGTTCATGTTCAATTTGTGCTG TCATTTTTTGACTTGTTACATCTGTGAAGGATAAGGAAATATATGTATATTCATTTTGACAATTTTAGGTGAAACATGTC ATACCCTTGTAACAATAGTTGTGTTTTTTCTCCTTCTTGTGTGTACAATTGAGAATAAAGTTTAAACCTATCATCTCCTG CGAACTTTCTAAAAACCCTAGCCCCCTCTTATAATGGTCCTTGTGGTTTAATGACCATTGTTGCTAGTGTTATCATTTGA TTGCAAAGTATAAACAATTCAAATCACAATATAGTCACTCAATAAAGCACATAATAAAACTAACAGCATATAAAAACAAA CAAACAAGTCATCCCTAAAGCTCTATCATGTTATTTGATACACTGCCTCCAAAAGAGAATTTGATATATCACTTTTTCAA AAAGGAAAAT 

CDS sequence (LotjaGi4g1v0025400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGATCGGAGATGGTTGATGCGGGGCCAGTCACGCCGGGGCAGGTGTCTTTCCTGCTGGGAGTTATTCCAGTTTTTAT TACATGGATATATTCAGAGTACTTAGAGTACAAAAAAACTGCATTTCCTCCCAAAGTTCATTCAGATACTAGTCTTGATG AGTTAGGGAAGGATGCAATCAAGGAGGATGATCGGGCCATTTTGCTGGAAACAGGGCTTCCAAGATCAGCATCAGCAAAA CTCCATGCATCATCTGTCAAATTGAATTTGATTCGGTTCTTGACTATGGATGATTCTTTCTTGCTAGAAAATCGAGCAAC TTTGAGGGCAATGTCTGAGTTTGGGCTGATTCTGTTTTATTTCTACGTATGTGATAGAACCTACATACTTGGAAATTCTA CCAAGAATTACAACCGGGATCTTTTCTTGTTCCTCTACCTTCTTCTGATCATAGTTTCAGCAATGACTTCTTTGAAAAAA CATACTGACTCATCGGCATTTTCTGGAAGAAGCATACTTTACCTTAATCGGCATCAAACAGAAGAATGGAAAGGATGGAT GCAGGTCCTCTTTCTAATGTACCATTATTTTGCTGCAACGGAGATATACAACGCAATACGTGTTTTCATTGCAGCATATG TTTGGATGACTGGATTTGGCAACTTCTCCTATTATTACATCAGAAAAGATTTTAGCCTTGCACGCTTTGCTCAGATGATG TGGAGGCTTAATCTTTTTGTGGTCTTCTGTTGTATTGTTCTTAACAATGACTATATGCTATATTATATATGTCCAATGCA CACGCTTTTCACTTTGATGGTGTATGGAGCATTGGGTATATATAGCAAGTACAATGAAATCAGCTCGGTGATAGCTGCAA AGATTCTGGCTTGCTTTCTTGTGGTGATCTTGGTTTGGGAAGTACCTGGAGTCTTTGACTTAATCTGGGGCCCATTTGCA ATCTTTTTGGGTTATACGGATCCTGCAAAGCCTGATCTCCCTAGAATGCATGAGTGGCATTTCAGATCTGGGCTTGATCG CTACATATGGATAATTGGAATGATTTATGCCTACTTTCATCCAAATGTTGAGAAATGGATGGAAAAATTGGAAGAGTGTG AATCCAAGAGGAGAGTAGCAATCAAAACCAGCATTGTTTCAGTTTCTGTATTTGTTGGGTACTTGTGGTATGAATACATA TACAAGCTGGACAAGGTTTCATACAACAAACTCCACCCCTACACCTCATGGATTCCTATTACTGTTTACATTTGCTTGAG GAATTTCACTCAGCAGTTTCGGAGTTTCTCTTTGACCCTCTTTGCGTGGCTTGGCAAGATTACTTTGGAGACTTACATTT CACAGTTTCACATTTGGTTGAGGTCGAACACGCCCAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCAGAGTATCCT ATGCTGAACTTCATGCTTACTACTGCTATATACGTCTTGGTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGGC AGTATTCATACCCACAAAGGACAATCGGCGGCTGCTGCATAATTTTATTACTGGGGTGGCCATCTCTGTTACCTTGTATT GCGTCTCACTTATTCTGCTTCAGATTCCTCATTCAATGGCTTGA 

Protein sequence (LotjaGi4g1v0025400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSEMVDAGPVTPGQVSFLLGVIPVFITWIYSEYLEYKKTAFPPKVHSDTSLDELGKDAIKEDDRAILLETGLPRSASAK LHASSVKLNLIRFLTMDDSFLLENRATLRAMSEFGLILFYFYVCDRTYILGNSTKNYNRDLFLFLYLLLIIVSAMTSLKK HTDSSAFSGRSILYLNRHQTEEWKGWMQVLFLMYHYFAATEIYNAIRVFIAAYVWMTGFGNFSYYYIRKDFSLARFAQMM WRLNLFVVFCCIVLNNDYMLYYICPMHTLFTLMVYGALGIYSKYNEISSVIAAKILACFLVVILVWEVPGVFDLIWGPFA IFLGYTDPAKPDLPRMHEWHFRSGLDRYIWIIGMIYAYFHPNVEKWMEKLEECESKRRVAIKTSIVSVSVFVGYLWYEYI YKLDKVSYNKLHPYTSWIPITVYICLRNFTQQFRSFSLTLFAWLGKITLETYISQFHIWLRSNTPNGQPKWLLSLIPEYP MLNFMLTTAIYVLVSHRLFELTNTLKAVFIPTKDNRRLLHNFITGVAISVTLYCVSLILLQIPHSMA 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 11 11 -
PANTHER 6 541 536 0.0
PANTHER 6 541 536 0.0
TMHMM 10 32 23 -
Phobius 12 31 20 -
Phobius 32 105 74 -
Phobius 106 123 18 -
Pfam 106 517 412 3.4E-98
Phobius 124 142 19 -
TMHMM 141 158 18 -
Phobius 143 162 20 -
Phobius 163 182 20 -
Phobius 183 199 17 -
Phobius 200 204 5 -
Phobius 205 227 23 -
TMHMM 205 227 23 -
Phobius 228 238 11 -
Phobius 239 254 16 -
TMHMM 239 256 18 -
Phobius 255 259 5 -
Phobius 260 281 22 -
TMHMM 260 282 23 -
Phobius 282 292 11 -
Phobius 293 319 27 -
TMHMM 295 317 23 -
Phobius 320 338 19 -
Phobius 339 359 21 -
TMHMM 344 363 20 -
Phobius 360 378 19 -
Phobius 379 399 21 -
TMHMM 384 401 18 -
Phobius 400 410 11 -
Phobius 411 429 19 -
TMHMM 411 430 20 -
Phobius 430 440 11 -
TMHMM 437 459 23 -
Phobius 441 460 20 -
Phobius 461 479 19 -
TMHMM 479 498 20 -
Phobius 480 499 20 -
Phobius 500 518 19 -
TMHMM 518 540 23 -
Phobius 519 542 24 -
Phobius 543 547 5 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0025400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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