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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0190600 |
| Transcript ID | LotjaGi4g1v0190600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 55 like; TAIR: AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein; Swiss-Prot: sp|Q9AST6|VSP55_ARATH Vacuolar protein sorting-associated protein 55 homolog; TrEMBL-Plants: tr|A0A061G3D7|A0A061G3D7_THECC Vacuolar protein sorting 55 (VPS55) family protein isoform 1; Found in the gene: LotjaGi4g1v0190600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:43675407..43676354) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGAGTTACCAGGACATTTTCGTTTCTGCTTGCACACTGGGAAACTTGTCCTTTTGGCAATTTTGGTCTCTGCAGG AGTCGTCCTGCAGATTTTGGTTAGTATTTATTTTTTCTTCATAGTTTATTATACCAAATCTTTTAACACAATTTTAATTT TAAGTGTTGATTTCTTAATCAATTTACCAACAAGGCCTAGCACAATTGGTAATTAAATTGTTGAGCTTTTTAAGCATTTA GTTCAGGATTCGATTCCAATGATTGAATTTTAACTGACATGATGCAATGTCATTGGTTGTGACAGGAAATGAGACAAGAG GATTTTAACCCCTAAAATGTTAACAAATTAAAAGACAACTTCATAGCAATATGCCACTGTTACTAATTACCTCTGTTCTA TGTGGCAGGCATGTGCCTTGTATGATAATTGGTGGCCAATGCTAACTGGTGAGATAAACCATCATTGTATTTGATTAATC CAGTATACTATATATAAAACTACTTGTTTTCATTTATTGGATTGTTATGTCATATGTGACAAGCAGTTTTAATCTTTTTT TTTTTTTCTCTTGCAGCAATAACATATGTGCTTCTTCCAATGCCTTTGTTGTTCTTTGCTGCATCAGAACGTTCTTCTTT ATTTTCTGAATCAGATAGCAGGTAAACCGTTGACTTTCCTAGTTCAAGATAGGGAATTGAATATTTTTTTTTTTAATTTT GTGGTCTAATGAAATATGAATGATGGAGCATGCAGCTGGGTGAATGCAACCAAGTTCTTGGCAGGGGCGTCAGCTGTTGG AAGCATTGCAATTCCAGCCATATTAAAGCATTCTGGTGTTATTGGTTGGGGAGCTCTTGCAATGGATGTCTCTTCCTTCT TTGTCTTTGTATTTGCCATCATGTGCTACATTCGGATGAGTGGTGAATATGATTACCGTATTATTTGA
CDS sequence (LotjaGi4g1v0190600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGTTACCAGGACATTTTCGTTTCTGCTTGCACACTGGGAAACTTGTCCTTTTGGCAATTTTGGTCTCTGCAGG AGTCGTCCTGCAGATTTTGGCATGTGCCTTGTATGATAATTGGTGGCCAATGCTAACTGCAATAACATATGTGCTTCTTC CAATGCCTTTGTTGTTCTTTGCTGCATCAGAACGTTCTTCTTTATTTTCTGAATCAGATAGCAGCTGGGTGAATGCAACC AAGTTCTTGGCAGGGGCGTCAGCTGTTGGAAGCATTGCAATTCCAGCCATATTAAAGCATTCTGGTGTTATTGGTTGGGG AGCTCTTGCAATGGATGTCTCTTCCTTCTTTGTCTTTGTATTTGCCATCATGTGCTACATTCGGATGAGTGGTGAATATG ATTACCGTATTATTTGA
Protein sequence (LotjaGi4g1v0190600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAELPGHFRFCLHTGKLVLLAILVSAGVVLQILACALYDNWWPMLTAITYVLLPMPLLFFAASERSSLFSESDSSWVNAT KFLAGASAVGSIAIPAILKHSGVIGWGALAMDVSSFFVFVFAIMCYIRMSGEYDYRII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 135 | 135 | 1.9E-71 | ||
| Phobius | 1 | 16 | 16 | - | – | |
| PANTHER | 1 | 135 | 135 | 1.9E-71 | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Pfam | 17 | 131 | 115 | 1.5E-32 | ||
| Phobius | 17 | 34 | 18 | - | – | |
| Phobius | 35 | 39 | 5 | - | – | |
| Phobius | 40 | 61 | 22 | - | – | |
| TMHMM | 44 | 63 | 20 | - | – | |
| Phobius | 62 | 81 | 20 | - | – | |
| TMHMM | 76 | 98 | 23 | - | – | |
| Phobius | 82 | 98 | 17 | - | – | |
| Phobius | 99 | 103 | 5 | - | – | |
| TMHMM | 103 | 125 | 23 | - | – | |
| Phobius | 104 | 127 | 24 | - | – | |
| Phobius | 128 | 138 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0190600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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