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LotjaGi4g1v0246500.5

Overview

Field Value
Gene ID LotjaGi4g1v0246500
Transcript ID LotjaGi4g1v0246500.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Hypersensitive-induced response protein 1; TAIR: AT5G62740.1 SPFH/Band 7/PHB domain-containing membrane-associated protein family; Swiss-Prot: sp|Q9FM19|HIR1_ARATH Hypersensitive-induced response protein 1; TrEMBL-Plants: tr|A0A0D2LVS1|A0A0D2LVS1_GOSRA Uncharacterized protein; Found in the gene: LotjaGi4g1v0246500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:59807405..59809146) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGAAATCTGCTATGTTGTGTGCAAATTGAACAATCAACGGTGGCTATAAAAGAAAAATTTGGGAGATTTGAAGAGGT TCTTGAGCCGGGATTCCATTGCGTGCCAATGTTCCTTGGAGATAGACTGGCTGGTCATCTCTCTCTTCGCCTACAACAAT TGGATATCCAATGTGAGACCAAGACAAAGGTTTGTTACTTGTAGCACCTCAGTCATATCCAAACCTTCATGTCATTTCAT AGTTATCAAGCACCATGAATTCTTGTTGCCTTGGACATTTTTTCATTTTTATCTATGTATAAGATGATACTCTTTTTGTT TGCTTTTTTCCCCACTGAATTAAAGTTGATTGGTTTGAAGGTTTATTTGCTTACAGGATAATGTCTTTGTTAATGTTGTT GCCTCTATTCAATATCGCGCCCTGGCGGACAAGGCTAGTGATGCTTTTTACAAACTTAGCAATACAAGGACCCAAATTCA GGCCTATGTTTTTGATGGTATAAATCACAACACTGCTTAACAATACAGAACCTTGAAATAAGTGGGGTTTAACCATAACT TATCAGATAAGGTGAAATTTCTCTTATCATTGCAGTAATTCGAGCATATGTTCCAAAACTCAACTTGGATGATGCTTTTG AGCAGAAAAATAAAATTGCCAAAGCTGTGGAAGAAGAACTTGAGAAGGTTTCTTTCTTTTTTTGAGAAACAATATTTATT GATAAGGTTAACTTTGATTCATGTTAACATGATTAGATGCTTCATTGTCTTAACAGGCTATGTCAGGTTACGGATATGAA ATCGTTCAAACACTGATTATTGATATAGAGCCAGATGTTCATGTGAAGCGGGCTATGAATGAAATCAATGCTGGTATGTC CTTTTTCAAATGATGTTAAATATGTACTAAGATATTGTATCATGAAGTGTAACTTTTGACTCAAATGATTCTTTGTTAAT AGCTTACCCATCTGATTCAATATTCAACCTGTTTGAATACAAACCAAAGAGCACTATTTGGAGCTTATCTAGTATTTTTT TTCTAGTAGATAACCTCCAATAAGTTCGTATCCAAACAGACTATTGTATGACTTATGATTGCCTGATTTTCTTCCAATGT TTTCTGTCCTTGTTCAGCTGCAAGATTGAGGTTGGCAGCTACTGAGAAGGCAGAGGCAGAGAAGATTTTGCAAATCAAGC GAGCCGAGGGTGAGGCCGAGGCTAAATATCTTTCTGGTCTCGGCATTGCGCGCCAACGCCAAGCAATTGTTAATGGCTTG AGAGACAGTGTGCTTGGATTCGCAGTGAATGTACCGGGGACAAGTGCAAAAGATGTCATGGACATGGTCCTTGTCACTCA GTATTTTGACACAATGAAAGAGATTGGTGCTGCCTCCAAGTCCTCTGCTGTGTTTATTCCTCATGGACCCGGTGCTGTTC GCGATGTAGCTAGTCAAATCCGCAATGGACTTCTTCAGGCTTCTCATCAGTAGTTTGTACTCCTTCCGATCATATCTGGT TTGTATTGGAGTGTATAGTGAACGGTGGTGTGCTATAATGGCTTAATGCCTTTGGCTGTATTTGTTTGCAGTGTGTTATG TGATTTTTGTATCAAAGTAAACGGCTAAATGCATGTTTGTATTTCTGTCCGTGCACATTCCGAGGTAGTTTGAATGTGTG TTTAACCAATCCATGTCTCTCGTGTCATTGGATTGAATGTGCTTTTGACCAACATGAACTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0246500.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAAATCTGCTATGTTGTGTGCAAATTGAACAATCAACGGTGGCTATAAAAGAAAAATTTGGGAGATTTGAAGAGGT TCTTGAGCCGGGATTCCATTGCGTGCCAATGTTCCTTGGAGATAGACTGGCTGGTCATCTCTCTCTTCGCCTACAACAAT TGGATATCCAATGTGAGACCAAGACAAAGGATAATGTCTTTGTTAATGTTGTTGCCTCTATTCAATATCGCGCCCTGGCG GACAAGGCTAGTGATGCTTTTTACAAACTTAGCAATACAAGGACCCAAATTCAGGCCTATGTTTTTGATGTAATTCGAGC ATATGTTCCAAAACTCAACTTGGATGATGCTTTTGAGCAGAAAAATAAAATTGCCAAAGCTGTGGAAGAAGAACTTGAGA AGGCTATGTCAGGTTACGGATATGAAATCGTTCAAACACTGATTATTGATATAGAGCCAGATGTTCATGTGAAGCGGGCT ATGAATGAAATCAATGCTGCTGCAAGATTGAGGTTGGCAGCTACTGAGAAGGCAGAGGCAGAGAAGATTTTGCAAATCAA GCGAGCCGAGGGTGAGGCCGAGGCTAAATATCTTTCTGGTCTCGGCATTGCGCGCCAACGCCAAGCAATTGTTAATGGCT TGAGAGACAGTGTGCTTGGATTCGCAGTGAATGTACCGGGGACAAGTGCAAAAGATGTCATGGACATGGTCCTTGTCACT CAGTATTTTGACACAATGAAAGAGATTGGTGCTGCCTCCAAGTCCTCTGCTGTGTTTATTCCTCATGGACCCGGTGCTGT TCGCGATGTAGCTAGTCAAATCCGCAATGGACTTCTTCAGGCTTCTCATCAGTACAACATGAACTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0246500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGNLLCCVQIEQSTVAIKEKFGRFEEVLEPGFHCVPMFLGDRLAGHLSLRLQQLDIQCETKTKDNVFVNVVASIQYRALA DKASDAFYKLSNTRTQIQAYVFDVIRAYVPKLNLDDAFEQKNKIAKAVEEELEKAMSGYGYEIVQTLIIDIEPDVHVKRA MNEINAAARLRLAATEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVNGLRDSVLGFAVNVPGTSAKDVMDMVLVT QYFDTMKEIGAASKSSAVFIPHGPGAVRDVASQIRNGLLQASHQYNMN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43327:SF20
1 284 284 4.3E-176 –
PANTHER
PTHR43327
1 284 284 4.3E-176 –
SMART
SM00244
5 165 161 7.7E-36
IPR001107
Pfam
PF01145
9 182 174 4.3E-27
IPR001107
CDD
cd03407
10 278 269 2.72972E-152 –
Gene3D
G3DSA:3.30.479.30
44 167 124 2.2E-15 –
SUPERFAMILY
SSF117892
46 171 126 1.14E-24
IPR036013

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0246500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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