Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0253100 |
Transcript ID | LotjaGi4g1v0253100.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | SNAP25 like protein SNAP33; TAIR: AT5G61210.1 soluble N-ethylmaleimide-sensitive factor adaptor protein 33; Swiss-Prot: sp|Q9S7P9|SNP33_ARATH SNAP25 homologous protein SNAP33; TrEMBL-Plants: tr|I3SMA3|I3SMA3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0253100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:60693091..60696549) extracted from Lotus japonicus Gifu genome v1.2.
CTCCCACATGATCTCAAAAAGGTCCCTAGTCCCTACTTTATTCATTCAATTCAACCAACGTCTCAATTCAACAACAACGC CTATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAA AATAAAAATAAAACATCACAAACCCCAAAAAACACGTTCACTCTTGTTCTGCAATTTCTGTGAATCTTCCACGCTCCCTC CCGAATCTGACTTTTCTTGACGCGATTCTGCAAGATTCCTATTCTTCTGCATTGCCAACTCCTTCTTCAATTCTTCCTCC AATCTACCGCTATTAATATTACGAGTACGGAGTATTTTCTGTGTTTTCCTCCAGGTACCATATCTTGCTTTCTCTTTTGC AAGTTTTGATTTTGATGATTGCCCTGCTCAGGAAACCCCTTAAATCTATCTGGGTCTTGCTTGTTTTGTTTTTCTCTTGT TGGGTTTCTTTGTGATTATCTTAGGGTCAAATTCAGTTCAATTTTCTATCTTGATGAAGGGTTTCTGCTATCCTTCAAGA TCTTTGTTTTTTTATTGTTATGAGCAACCAAACAAAGCGATTCATGTGCTGATTTATTTGCTTTTATCAAGTTTGAGAAT TGTTTATACCAAAAGTAGTTTGTGAATTGTGATGCTGTGATCATGTTTTTTTTGCGGTCATAGTCAATGGTTTCTGATTC CCTTTCTTTGTGCTGCTTTGGTGTTATCGCTTTTGTCCATTCTCTCTATCTTTGTTTAGTATCTTCTTTGCCTTCTGTAT TAATTAACGATAGAATTTATGAAGTTAAGCTTTGTTTTAGGTTGTTATGACTTATGAGTATGATTTCTTGTGTCCTAATA AAATTATTGCTTTTGTTATAAGTGGATTAAGAATTTGATATTTTGGTTCCTTTTGCTTATTGTGGAAATTAACAGTGGCT GAATATCACTTGCTTGCCTTTGCAGGGAGAAATTGATCTGTGTCTTTATATCACACAGGATTGTTGTTCCTTATTCTTTA AGAAGCTTACTTCAATCTGCCTCTGACTGAATTCTGCAAGAAGAGAGAAAATGTTTAGTTCAAAGAAATCTCCTGTGAAG GTTGCTAAGCCTAGCTCTGTTGGTCCGGTGTATCCTGTTAAATCCGGGTCGAACCCATTTGATTCGGATGATGAGGGAAA TGATAACAAAAAGTATAATTCCTCACGGAAGACCTCCTCAGAACGTGCACTTGCTACGCTAGAAGTTAACACCAATCCTT TTGATGACGTTGATGATACTAAGAAACCTTCATCATCTTTGTATGCCGCTCCATCCGCTGACAGGAACAGATATAGGAAT GATTTTCGTGAATCTGGTGGAGTAGAGAATCAGTCGGTGCAGGAATTGGAAAGTTATGCTGTTTATAAGGCTGAAGAGAC TACAAAATCAGTCAACAATTGTTTGAAGATAGCAGAGAACATAAGAGAGGATGCTACCAAGACTTTAGTCACTCTTCACC AACAGGGTGAGCAAATTACCAGGAGTCACTATGTTGCTGCTGACATTGATCATGACTTAAGTCGGGTATAGTCTCTTGTC AATTAATACTTTTGTTTCAATTTTCCTATATGGGTGGCTTGGTAATGTTGTTTTACACTTGTGATGACACTCTGTTACTT CATACATCGAACTCTTCTGGTTATGCAATCCTTTAAAAATCAGATCAGTATTCTGAGTATTCTGGACAAGAACTGACTAA GTTTTGGCTCTTATTTCTGCTTCCAGGGAGAAAAGCTTTTGGGAAGCCTTGGTGGCCTCTTCTCCAAAACTTGGAAGCCG AAGAAGACACGTGCAATAAGAGGCCCTGTTATTTTTGGAGGTTGATATTTTCTCTGTGTATGTTTCTTTCCCAATTTCGA ATCACTTTGGGTTATCATAGGTATAATGTGCTTCTTCATGATATGCAGATAATCCAGTTAGCAGACAGGCCAACCACTTG GAACAGAGAGAGAAGTTGGGATTGACTTCTGCACCCAGAGGGCAAACTAAGATGCGAACCCCACCTCACGAATCATCAAC TGCACTTCAAAAAGTTGAGGTTCGTATCAACTAGTTGCAGATTTTATTGTTGTTGAAAGCCAGTTTAACATGATAAAGCT GTAGCTTCTTCCTGATATTAATGTGATTAATATGTGTTGGCGATTTTCTACTATTATTTTAGCTCTAATGACCAGATCAC TTACTCTGCATCTAGCTTATAAAAAACAAAACTTACTTTGCATCTAAACCAGTTTTGACTACAATCATCAATGATTTTGT TTGCATTCTCCTTTCATGTTTCCCCCATTAACCACCTTGACTCTCTACTCACTGTTAGGTTTGACTTGGATAATTTCATT TGGGATTTTCCTCTTTGCCTTGCTTGATATTATATTTATTGTTGATATTCAATTCAGCTACTAAAGAAAATGTCTTGAAA CAGTTTGAAAAAGGGAAGCAAGATGATGCACTTTCGGATTTAAGTGATCTGTTGGGAGAGCTTAAAGACATGGCCATTGA CATGGGATCCGAAATTGAGAGGTTAGTCCACCACATTCTATTAATTGTTGTTTTCTCGAACTTTACCTTCAAGTGATTCT CGAACTCTCTCTCCTCCCATACGGATTTAGATCTTATCATGTGAAGTTTTCACATAATTTTGTTTTGTTGAAGTTTCTAT TAATCTCCCTCTTCATCCCTTTTCATGTGTGTTAAATCAGTGATTCTGGTGAATATTTATGAAGTAAAACATAAAGACAA ACTTTAACATAACAATTTCATTTCACATGAGAGGATTTAAATTGACATCTTGACTTGGCTCTATCTGCATCAACTTTCTG AAGAGTTTGAGTTTTGTTCAGGTTGTCATAATTAATAGTTATTTGGTTGTGAATGTTGCAGGCACAATAAAGCTCTGAGC CATCTAGATGATGATGTGGAAGAGTTGAATTTCCGAGTGAAAGGTGCTAATCAAAGAGGCCGTCGTTTGCTTGGAAAATA AGATTGATTTCAACTTTCATCATTGTTATATGATACTGTAATTGATTCAGTTCATCATCTTGGTTTAGACAATGTTTTCA TAGTTATGATGTAGTTTACACTTACTGAATTGGCAACAGATTAAACTAGCCTTGTGCCCCTATTCTTTACAATTCTCTGA CACATTGAAATTGATTCTAATAAAACAAATAACTTCATCTAATTAAATTCCAAAGCAAACACTTCGCAAAAGCCATATTT GTGAGATGGAAGAATTTAATGGATTAGAAAAAATGACATTTTAACAGTTGCAATGTGTGCACATACACACTCGTATTAAG AATGAAAGTAGATAATCAAAACGAGAATTTGATCCATAAGGGTTGAAGATCACAATCAATTTGTTAATATTGTGTTTTTC AAAAAATAAATTTGTTAAG
CDS sequence (LotjaGi4g1v0253100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTAGTTCAAAGAAATCTCCTGTGAAGGTTGCTAAGCCTAGCTCTGTTGGTCCGGTGTATCCTGTTAAATCCGGGTC GAACCCATTTGATTCGGATGATGAGGGAAATGATAACAAAAAGTATAATTCCTCACGGAAGACCTCCTCAGAACGTGCAC TTGCTACGCTAGAAGTTAACACCAATCCTTTTGATGACGTTGATGATACTAAGAAACCTTCATCATCTTTGTATGCCGCT CCATCCGCTGACAGGAACAGATATAGGAATGATTTTCGTGAATCTGGTGGAGTAGAGAATCAGTCGGTGCAGGAATTGGA AAGTTATGCTGTTTATAAGGCTGAAGAGACTACAAAATCAGTCAACAATTGTTTGAAGATAGCAGAGAACATAAGAGAGG ATGCTACCAAGACTTTAGTCACTCTTCACCAACAGGGTGAGCAAATTACCAGGAGTCACTATGTTGCTGCTGACATTGAT CATGACTTAAGTCGGGGAGAAAAGCTTTTGGGAAGCCTTGGTGGCCTCTTCTCCAAAACTTGGAAGCCGAAGAAGACACG TGCAATAAGAGGCCCTGTTATTTTTGGAGATAATCCAGTTAGCAGACAGGCCAACCACTTGGAACAGAGAGAGAAGTTGG GATTGACTTCTGCACCCAGAGGGCAAACTAAGATGCGAACCCCACCTCACGAATCATCAACTGCACTTCAAAAAGTTGAG TTTGAAAAAGGGAAGCAAGATGATGCACTTTCGGATTTAAGTGATCTGTTGGGAGAGCTTAAAGACATGGCCATTGACAT GGGATCCGAAATTGAGAGGCACAATAAAGCTCTGAGCCATCTAGATGATGATGTGGAAGAGTTGAATTTCCGAGTGAAAG GTGCTAATCAAAGAGGCCGTCGTTTGCTTGGAAAATAA
Protein sequence (LotjaGi4g1v0253100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSSKKSPVKVAKPSSVGPVYPVKSGSNPFDSDDEGNDNKKYNSSRKTSSERALATLEVNTNPFDDVDDTKKPSSSLYAA PSADRNRYRNDFRESGGVENQSVQELESYAVYKAEETTKSVNNCLKIAENIREDATKTLVTLHQQGEQITRSHYVAADID HDLSRGEKLLGSLGGLFSKTWKPKKTRAIRGPVIFGDNPVSRQANHLEQREKLGLTSAPRGQTKMRTPPHESSTALQKVE FEKGKQDDALSDLSDLLGELKDMAIDMGSEIERHNKALSHLDDDVEELNFRVKGANQRGRRLLGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 11 | 11 | - | – | |
PANTHER | 1 | 305 | 305 | 2.8E-144 | – | |
MobiDBLite | 1 | 100 | 100 | - | – | |
PANTHER | 1 | 305 | 305 | 2.8E-144 | – | |
MobiDBLite | 31 | 47 | 17 | - | – | |
Gene3D | 97 | 175 | 79 | 5.6E-21 | – | |
SUPERFAMILY | 101 | 171 | 71 | 1.18E-17 | – | |
SMART | 106 | 173 | 68 | 2.5 | ||
CDD | 109 | 172 | 64 | 1.43542E-20 | – | |
SMART | 235 | 302 | 68 | 1.8E-5 | ||
Gene3D | 237 | 304 | 68 | 4.9E-21 | – | |
SUPERFAMILY | 239 | 303 | 65 | 6.11E-14 | – | |
CDD | 245 | 301 | 57 | 2.58073E-16 | – | |
ProSiteProfiles | 245 | 302 | 58 | 14.014 | ||
Coils | 271 | 291 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0253100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…