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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SSF58038
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 115 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.039s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0058029.2
n.a. PREDICTED: membrin-11-like [Glycine max] gi|356567466|ref|XP_003551940.1| chr0 19100304 19103154 +
1 domain prediction
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Lj0g3v0061899.1
n.a. PREDICTED: novel plant SNARE 11-like [Fragaria vesca subsp]. vesca] gi|470128757|ref|XP_004300301.1| chr0 20782580 20787533 -
1 domain prediction
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Lj0g3v0085909.1
n.a. PREDICTED: bet1-like SNARE 1-2-like [Cicer arietinum] gi|502122662|ref|XP_004497854.1| chr0 34515357 34520255 +
1 domain prediction
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Lj0g3v0109489.1
n.a. PREDICTED: syntaxin-related protein KNOLLE-like [Glycine max] gi|356559528|ref|XP_003548051.1| chr0 47423549 47424201 +
1 domain prediction
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Lj0g3v0205029.1
n.a. PREDICTED: membrin-11-like [Glycine max] gi|356567466|ref|XP_003551940.1| chr0 101926525 101928944 +
1 domain prediction
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Lj0g3v0205029.2
n.a. PREDICTED: membrin-11-like [Glycine max] gi|356567466|ref|XP_003551940.1| chr0 101927521 101928944 +
1 domain prediction
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Lj0g3v0245509.1
n.a. Syntaxin-22 [Medicago truncatula] gi|357508487|ref|XP_003624532.1| chr0 127252598 127253879 -
1 domain prediction
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Lj0g3v0321629.1
n.a. PREDICTED: vesicle-associated membrane protein 725-like [Glycine max] gi|356567876|ref|XP_003552141.1| chr0 167935440 167938913 -
1 domain prediction
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Lj1g3v0244730.1
n.a. PREDICTED: bet1-like protein At4g14600-like [Cicer arietinum] gi|502095261|ref|XP_004490412.1| chr1 2463712 2466116 +
1 domain prediction
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Lj1g3v0525430.1
n.a. PREDICTED: vesicle transport v-SNARE 13-like isoform X1 [Cicer arietinum] gi|502128601|ref|XP_004500015.1| chr1 6601595 6603222 -
1 domain prediction
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Lj1g3v0525430.2
n.a. PREDICTED: vesicle transport v-SNARE 13-like isoform X1 [Cicer arietinum] gi|502128601|ref|XP_004500015.1| chr1 6601595 6605933 -
1 domain prediction
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Lj1g3v1318350.1
n.a. Syntaxin-22 [Medicago truncatula] gi|357508487|ref|XP_003624532.1| chr1 16014785 16016066 +
1 domain prediction
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Lj1g3v1526270.1
n.a. PREDICTED: bet1-like protein At4g14600-like [Cicer arietinum] gi|502133166|ref|XP_004501672.1| chr1 18267826 18270040 -
1 domain prediction
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Lj1g3v2360050.2
n.a. transducin family protein [Arabidopsis lyrata subsp]. lyrata] gi|297806573|ref|XP_002871170.1| chr1 27698110 27700560 -
1 domain prediction
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Lj1g3v2404350.1
n.a. PREDICTED: vesicle transport v-SNARE 12-like [Cicer arietinum] gi|502094006|ref|XP_004490116.1| chr1 28264189 28267169 -
1 domain prediction
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Lj1g3v3478250.1
n.a. Vesicle-associated membrane protein [Medicago truncatula] gi|357505361|ref|XP_003622969.1| chr1 40403964 40407058 -
1 domain prediction
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Lj1g3v4483380.1
n.a. bet1-like snare 1-1 [Malus domestica] gi|188529683|gb|ACD62528.1| chr1 52478587 52481188 -
1 domain prediction
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Lj1g3v4483380.2
n.a. bet1-like snare 1-1 [Malus domestica] gi|188529683|gb|ACD62528.1| chr1 52478587 52481188 -
1 domain prediction
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Lj1g3v4579390.1
n.a. PREDICTED: syntaxin-71-like [Glycine max] gi|356537535|ref|XP_003537282.1| chr1 54581665 54584466 +
1 domain prediction
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Lj2g3v1068710.1
n.a. PREDICTED: vesicle transport v-SNARE 13-like [Cicer arietinum] gi|502091039|ref|XP_004489422.1| chr2 17174265 17177732 -
1 domain prediction
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Lj2g3v1265070.1
n.a. SNAP25 homologous protein SNAP33 [Medicago truncatula] gi|357487473|ref|XP_003614024.1| chr2 20109277 20110870 +
1 domain prediction
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Lj2g3v1277490.1
n.a. PREDICTED: vesicle transport v-SNARE 12-like [Cicer arietinum] gi|502094006|ref|XP_004490116.1| chr2 20306511 20310708 +
1 domain prediction
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Lj2g3v1277490.2
n.a. PREDICTED: vesicle transport v-SNARE 12-like [Cicer arietinum] gi|502094006|ref|XP_004490116.1| chr2 20307733 20310708 +
1 domain prediction
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Lj2g3v3022900.1
n.a. PREDICTED: vesicle-associated membrane protein 711-like [Cicer arietinum] gi|502098408|ref|XP_004491228.1| chr2 39084748 39087773 +
1 domain prediction
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Lj2g3v3164130.1
n.a. PREDICTED: syntaxin-61-like [Glycine max] gi|356553080|ref|XP_003544886.1| chr2 40818175 40821900 -
1 domain prediction
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Lj2g3v3164130.2
n.a. PREDICTED: syntaxin-61-like [Glycine max] gi|356553080|ref|XP_003544886.1| chr2 40818175 40821900 -
1 domain prediction
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Lj2g3v3224240.1
n.a. PREDICTED: syntaxin-51-like [Glycine max] gi|356553533|ref|XP_003545109.1| chr2 41231930 41235129 +
1 domain prediction
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Lj3g3v2576210.1
n.a. PREDICTED: 25.3 kDa vesicle transport protein-like isoform X1 [Cicer arietinum] gi|502156568|ref|XP_004510539.1| chr3 31614385 31619854 +
1 domain prediction
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Lj3g3v2990300.1
n.a. PREDICTED: vesicle-associated membrane protein 714-like [Cicer arietinum] gi|502145830|ref|XP_004506198.1| chr3 37014107 37017690 -
1 domain prediction
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Lj4g3v0667970.1
n.a. Vesicle-associated membrane protein [Medicago truncatula] gi|357475115|ref|XP_003607843.1| chr4 10817768 10821376 +
1 domain prediction
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Lj4g3v1683300.1
n.a. PREDICTED: SNAP25 homologous protein SNAP33-like [Glycine max] gi|356511915|ref|XP_003524667.1| chr4 24457659 24460634 -
1 domain prediction
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Lj4g3v1881960.1
n.a. PREDICTED: vesicle-associated membrane protein 713-like [Cicer arietinum] gi|502151469|ref|XP_004508456.1| chr4 26763532 26765982 +
1 domain prediction
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Lj4g3v2249070.1
n.a. PREDICTED: novel plant SNARE 13-like [Glycine max] gi|356565471|ref|XP_003550963.1| chr4 30992902 30997841 +
1 domain prediction
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Lj4g3v2336870.1
n.a. PREDICTED: vesicle-associated membrane protein 724-like [Cicer arietinum] gi|502085197|ref|XP_004487861.1| chr4 32375410 32377846 +
1 domain prediction
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Lj4g3v2742700.1
n.a. Syntaxin-22 [Medicago truncatula] gi|357508487|ref|XP_003624532.1| chr4 36795324 36796605 -
1 domain prediction
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Lj5g3v0626690.1
n.a. SNARE protein [Lotus japonicus] gi|407969114|dbj|BAM62426.1| chr5 8451093 8456566 +
1 domain prediction
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Lj5g3v2237620.1
n.a. PREDICTED: vesicle-associated membrane protein 727-like [Glycine max] gi|356575504|ref|XP_003555880.1| chr5 32098508 32101962 +
1 domain prediction
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Lj6g3v0132830.1
n.a. vesicle-associated membrane protein 7B [Arabidopsis lyrata subsp]. lyrata] gi|297843284|ref|XP_002889523.1| chr6 1472697 1475069 -
1 domain prediction
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Lj6g3v0818990.1
n.a. Syntaxin-52 [Medicago truncatula] gi|357459803|ref|XP_003600182.1| chr6 8269266 8273044 -
1 domain prediction
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Lj6g3v0872240.1
n.a. PREDICTED: syntaxin-61-like [Glycine max] gi|356553080|ref|XP_003544886.1| chr6 8677106 8682514 +
1 domain prediction
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Lj6g3v0872240.2
n.a. PREDICTED: syntaxin-61-like [Glycine max] gi|356567342|ref|XP_003551880.1| chr6 8677106 8682514 +
1 domain prediction
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Lj6g3v1078510.1
n.a. fiber NTGP1-related protein [Gossypium barbadense] gi|35187452|gb|AAQ84317.1| chr6 12903509 12907613 +
1 domain prediction
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Lj6g3v1126350.2
n.a. PREDICTED: novel plant SNARE 13-like [Glycine max] gi|356565471|ref|XP_003550963.1| chr6 13891615 13897464 -
1 domain prediction
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Lj6g3v1444530.1
n.a. PREDICTED: vesicle-associated membrane protein 724-like [Cicer arietinum] gi|502085197|ref|XP_004487861.1| chr6 16989308 16991458 -
1 domain prediction
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Lj6g3v1692680.1
n.a. Vesicle-associated membrane protein [Medicago truncatula] gi|357448351|ref|XP_003594451.1| chr6 18919415 18923325 -
1 domain prediction
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LotjaGi1g1v0022700.1
n.a. Syntaxin, putative; TAIR: AT1G16240.1 syntaxin of plants 51; Swiss-Prot: sp|Q9SA23|SYP51_ARATH Syntaxin-51; TrEMBL-Plants: tr|I3SKD4|I3SKD4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0022700 LjG1.1_chr1 2777396 2783254 -
1 domain prediction
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LotjaGi1g1v0022700.2
n.a. Syntaxin; TAIR: AT1G16240.1 syntaxin of plants 51; Swiss-Prot: sp|Q9SA23|SYP51_ARATH Syntaxin-51; TrEMBL-Plants: tr|I3SKD4|I3SKD4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0022700 LjG1.1_chr1 2780759 2782197 -
1 domain prediction
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LotjaGi1g1v0028700.1
n.a. Syntaxin-61; TAIR: AT1G28490.1 syntaxin of plants 61; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|I1M6Q8|I1M6Q8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0028700 LjG1.1_chr1 3440644 3445247 +
1 domain prediction
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LotjaGi1g1v0028700.2
n.a. Syntaxin protein; TAIR: AT1G28490.2 syntaxin of plants 61; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|I1M6Q9|I1M6Q9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0028700 LjG1.1_chr1 3441318 3444243 +
1 domain prediction
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LotjaGi1g1v0028700.3
n.a. Syntaxin protein; TAIR: AT1G28490.3 syntaxin of plants 61; Swiss-Prot: sp|Q946Y7|SYP61_ARATH Syntaxin-61; TrEMBL-Plants: tr|I1M6Q9|I1M6Q9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0028700 LjG1.1_chr1 3442271 3444243 +
1 domain prediction
 –