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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0271200 |
| Transcript ID | LotjaGi4g1v0271200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TBC1 domain family member; TAIR: AT4G13730.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13; TrEMBL-Plants: tr|K7M077|K7M077_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0271200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:63723991..63727527) extracted from Lotus japonicus Gifu genome v1.2.
CCCGCAACTACCATTCTTCTTCTTCTGAGTAACCAACTGAGTTTCATATCCGAGTCACTGATGGAGAACCAGAACCAGAA CAAACCCTTACTATCTCTACAACTCGTTCGATTCCTCTCGGTAAACTCGGTCTCAACTCACCCGCCATGCTCAAAGGCAA GTTCAAGCTTCCACCACCTACTGACAAGGCTGGGAGAATCTTTCCCGATCAACTCGGCAGCTTAATCGCCGGATTTGATG AAAATGGAAACCGAATCGAAGCGTCCGACATCGAACTCGAGCCCGGTGAAGAGCTGGAGCCGATTCAACCCGGCGGGTTA GGGTTTTACAGAGAGTGTGACGACGGCGACGGAGCTGGCGGCGATGATGGTGGTGATGAAGACAAGGACAGGAAAATCAG GCAGAGAACGAGTAAAGACGCTGTCACTCCGGTTTCGGTGCTGAAATCGATTTCGGTGGACGAGAAAAGATCGGATTTAG AATATGAGGTTGGAGGTGTGGATTTATTGGAGAATGAAAATGGGAATGAAATAGTGGATTGTTTGTTTATCTGGTTAAGA TTTCCTTTGATTTGATCTCACTTTTTGGTTTTTACTTTTGTTATCTATAGCTTTCTAGAAGGGAGATTAATTTGGAAAAG TTGCAAAGAATTGCTAGCACTGGTATTCCTGATGGAGGCGGTTTGCGCGCAACGGCATGGAAGGTTAGTGTTAGAATATC TGGATTTTCATCATTTTGGTGCTCACATTGCATATTAGTTTCAGCTTTCAGGATCAGATACCTTCATGTTTTGAAATCTT ACTATAGTGAGGAATGTAATAGTATCTTGTGTTTATGACTTTGATTCATTATCTAGTGATGAAGATTATTAGATTAGCAA CAATGTGCATTTATGTTCCATTTGTTGAAGTGTAAAATGCCTTTGATTGTGGTTATGTCTGCACACAAGCAGCAGCTCAT TGTCCTGTTATGATTTCCACAACCAGCTACTCCTGGGTTACTTACCTTCATCCCATGATCTGTGGGAGATTCAATTAAGA GAGAATAGGCAAAAATACGCTAATCTGAAAGAGGAGCTTCTCCTGAATCCGGTAATGTATTGCTGATTTTTGCACTTTTC ATATGTGCAGCTATATCTGCTCTGACATATGTTGTAGCTCCTGCATTTTAGTTCAGTTTCACTGATCTTATTGTTGAACA TCAAACAGTCTGAACATATATGGAAGGATTATGAACATTTAAGTTCGACTAAGCTGCATGAGGACAATGATGTTGATGGC CCCCTAAGGCGACATGAAATTTCTGAGGAAGATCATCCTTTGAGCCTTGCTAAGGCAAGTCTTTGGAGTCAATATTTTAA GGTAAGTTTCTCCTCCATTTCAAAGTTACTTTTGACTCCTTTAGGATAATGGAATTGATACTTACCACTATCAGTTCTTC TTCTAGCATACAGAGATAGTAGAACAGATAGATCGAGATTTGCAGCGTACACATCCAGATATGCCATTCTTTTCAGGGGA GACATCATTTAGTAAAAAGACTAGGGTAAATGAACCCCCAAATTCCTATAAGTTTTCTATTAATTTTGTTGTGAGTTTTA GTTTTATCTGAACTATTCATCAACCTCTTTCTTGCCAATTTTGTTTTCAGTGTAATAATAAATTTTCAGGTTTTCATCTC TAATTTGTATTTTATTTATTTATTTTGACAATAGGAAGCGATGAGGGATATTCTTATCCTTTTTGCCAAGTTAAATCCTG CAATTCGATATGTTCAAGGCATGAACGAGGTCTTGGCACCAATATACTATGTATTTAGTACTGACACTGACAAACAAAAT GCTGTAAGCACTTTCTTGGTTGAAACTGGTTACTATGTGACTAGCGCCAGCTCTAATACTTGTTCTCTGGATAAGGTTGT TGATTAAAGGAAGGTTGATCCTGTGTTTTAAATTTCAAGTTTGAGTGTAACATATCTTACCATATTGCTTATGTAGGAAG CCACTATGATTCCTCTCTTTACCCCTTCATGTGCAGAAGCCTGAAAGTTTTACTGGTAGTCAATTTGGAATTTTAACTTG TTTTACACATGAACCAACACCAACCAAGCATGATTTGGTGTCCTTTATAATAATATTGACCGATATCCATTACGCTGAAC AACCACAAAACGTATAACTTTGCAGATCAGCTATTTGACTTGGCCATTTTAGATTACATGATTGATATATAACAATTGTC ATCCTTTCCATTCATCATATTTTGTTCCTCAGGATCGTTTGCATAAATATCAGCTGACGTAAATATAATGTTATCTATTT TTTGTCAATAAGTATCATCCTTTTATCATTTAGTTGTGTTTTTTTTTTCTCTTAGGCCAATGCAGAAGCGGATAGTTTTT CTTGTTTTGTTCGAATCTTAGGTGACTCTGTGGATCATTTCTGTCAACAATTGGACAATAGTTCCAGTGGCATCCTTGGC ACACTATCTCGTCTGTCAGATCTGCTAAAAGTAAATGACCAGCAATTATGGCATCATCTTGAATTTATAACAAAGGTAGA TCCTTCAAAAGTTTTTTAAATTCAACAGCTTGTTCAATTTTCCTCTGTTTAAAATTGATGCATGTAGTCTCTTAACAGGT TAAACCACAATTCTATGCGTTCCGGTGGATTACACTGCTACTCACGCAAGAGTTCAAATTTGAGACTATCTTGAGAATAT GGGATACAATTCTGAGTAATCCTTTTGGTGTTCAGGTCTCTCTCTCAACTGAACTCCTCGGCAATCTCTTGGAATAAAAT TGACGCTCAATGTAAATATTCTTACTCTATATTTCATGTTGTTTGGCTGCTTCAATATTTTTTTTTGCAGGATATGCTTC TTCGGATCTGTTGTGCTATGCTACTTTGCGTGAAAAACAGACTGCTAAGCGGTGATTTTGTAGCTAATATAAAGCTTTTA CAACACTATCCTGATGATATCAACATAGAATACCTCCTTCAGGTAGCTCAGTACATTAGTCCTGACACTTCTTCTTATCG TTTATCCCTTTGATTTATTAGGCATGTACATTGTTAGTAAAATTAACTTCTGAAGACTAAATATTTTACACCTAGCACAA GACATGTCCACGGGACCACTGGAGATGTTAAGGATAGAGTTTATGAGCATCATGTTGCTTCCATGCGACAATGATGGACC CATCTTCATTTTCCTCTGATAATTATTTTCTTCTATGAGTTGAAGTGCTTCATGTTTAAAGCAATGTGAAATTGCTCTTG TATGCTTTGTTTGGTTTAATAAAGAAATGAGCAGAAAAAAGATGAATAGAGAGAAAAGTGTAGATTTTGTAGGTTGTTTA ATATGATGGAAATAGAATACAGTGACTTCTGTCTCTTTGTTTGGTTGAATATAAGTCTATTATGTTTTAAATTTTTCTGT TGATGAATTTCCATTTAAATGATTGTCTGCAAGAAGAAGAAGTAGACGATTTTTCTAGAAGGCCTTCTTGAATAATGAAG GCCACAAAATTTGAAGG
CDS sequence (LotjaGi4g1v0271200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCGGTTTGCGCGCAACGGCATGGAAGCAGCTCATTGTCCTGTTATGATTTCCACAACCAGCTACTCCTGGGTTA CTTACCTTCATCCCATGATCTGTGGGAGATTCAATTAAGAGAGAATAGGCAAAAATACGCTAATCTGAAAGAGGAGCTTC TCCTGAATCCGTCTGAACATATATGGAAGGATTATGAACATTTAAGTTCGACTAAGCTGCATGAGGACAATGATGTTGAT GGCCCCCTAAGGCGACATGAAATTTCTGAGGAAGATCATCCTTTGAGCCTTGCTAAGGCAAGTCTTTGGAGTCAATATTT TAAGCATACAGAGATAGTAGAACAGATAGATCGAGATTTGCAGCGTACACATCCAGATATGCCATTCTTTTCAGGGGAGA CATCATTTAGTAAAAAGACTAGGGAAGCGATGAGGGATATTCTTATCCTTTTTGCCAAGTTAAATCCTGCAATTCGATAT GTTCAAGGCATGAACGAGGTCTTGGCACCAATATACTATGTATTTAGTACTGACACTGACAAACAAAATGCTGCCAATGC AGAAGCGGATAGTTTTTCTTGTTTTGTTCGAATCTTAGGTGACTCTGTGGATCATTTCTGTCAACAATTGGACAATAGTT CCAGTGGCATCCTTGGCACACTATCTCGTCTGTCAGATCTGCTAAAAGTAAATGACCAGCAATTATGGCATCATCTTGAA TTTATAACAAAGGTTAAACCACAATTCTATGCGTTCCGGTGGATTACACTGCTACTCACGCAAGAGTTCAAATTTGAGAC TATCTTGAGAATATGGGATACAATTCTGAGTAATCCTTTTGGTGTTCAGGATATGCTTCTTCGGATCTGTTGTGCTATGC TACTTTGCGTGAAAAACAGACTGCTAAGCGGTGATTTTGTAGCTAATATAAAGCTTTTACAACACTATCCTGATGATATC AACATAGAATACCTCCTTCAGGTAGCTCAGTACATTAGTCCTGACACTTCTTCTTATCGTTTATCCCTTTGA
Protein sequence (LotjaGi4g1v0271200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAVCAQRHGSSSLSCYDFHNQLLLGYLPSSHDLWEIQLRENRQKYANLKEELLLNPSEHIWKDYEHLSSTKLHEDNDVD GPLRRHEISEEDHPLSLAKASLWSQYFKHTEIVEQIDRDLQRTHPDMPFFSGETSFSKKTREAMRDILILFAKLNPAIRY VQGMNEVLAPIYYVFSTDTDKQNAANAEADSFSCFVRILGDSVDHFCQQLDNSSSGILGTLSRLSDLLKVNDQQLWHHLE FITKVKPQFYAFRWITLLLTQEFKFETILRIWDTILSNPFGVQDMLLRICCAMLLCVKNRLLSGDFVANIKLLQHYPDDI NIEYLLQVAQYISPDTSSYRLSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 11 | 305 | 295 | 6.3E-36 | ||
| PANTHER | 22 | 341 | 320 | 3.3E-148 | – | |
| PANTHER | 22 | 341 | 320 | 3.3E-148 | – | |
| SUPERFAMILY | 23 | 238 | 216 | 1.62E-36 | ||
| Coils | 32 | 52 | 21 | - | – | |
| Gene3D | 90 | 207 | 118 | 1.1E-12 | – | |
| ProSiteProfiles | 93 | 279 | 187 | 28.888 | ||
| Pfam | 109 | 302 | 194 | 6.9E-37 | ||
| Gene3D | 214 | 340 | 127 | 4.3E-34 | – | |
| SUPERFAMILY | 216 | 332 | 117 | 3.01E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0271200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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