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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR035969
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We have found 35 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.931s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0005600.1
n.a. TBC1 domain family member; TAIR: AT3G07890.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9BYX2|TBD2A_HUMAN TBC1 domain family member 2A; TrEMBL-Plants: tr|A0A151S006|A0A151S006_CAJCA TBC1 domain family member 2B; Found in the gene: LotjaGi1g1v0005600 LjG1.1_chr1 874277 878761 +
2 domain predictions
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LotjaGi1g1v0292900.1
n.a. GTPase-activating protein gyp7; TAIR: AT3G49350.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7; TrEMBL-Plants: tr|I1KAY2|I1KAY2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0292900 LjG1.1_chr1 71060546 71066584 -
2 domain predictions
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LotjaGi1g1v0292900.2
n.a. GTPase-activating protein gyp7; TAIR: AT3G49350.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7; TrEMBL-Plants: tr|I1KAY2|I1KAY2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0292900 LjG1.1_chr1 71060546 71066584 -
2 domain predictions
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LotjaGi2g1v0059900.1
n.a. TBC1 domain family member; TAIR: AT3G02460.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|O60447|EVI5_HUMAN Ecotropic viral integration site 5 protein homolog; TrEMBL-Plants: tr|V7C241|V7C241_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0059900 LjG1.1_chr2 12588969 12596655 +
2 domain predictions
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LotjaGi2g1v0059900.2
n.a. TBC1 domain family member; TAIR: AT5G15930.1 plant adhesion molecule 1; Swiss-Prot: sp|O60447|EVI5_HUMAN Ecotropic viral integration site 5 protein homolog; TrEMBL-Plants: tr|V7C241|V7C241_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0059900 LjG1.1_chr2 12590261 12594940 +
2 domain predictions
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LotjaGi2g1v0059900.3
n.a. TBC1 domain family member; TAIR: AT5G15930.1 plant adhesion molecule 1; Swiss-Prot: sp|O60447|EVI5_HUMAN Ecotropic viral integration site 5 protein homolog; TrEMBL-Plants: tr|V7C241|V7C241_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0059900 LjG1.1_chr2 12590261 12594940 +
2 domain predictions
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LotjaGi2g1v0059900.4
n.a. TBC1 domain family member; TAIR: AT3G02460.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|O60447|EVI5_HUMAN Ecotropic viral integration site 5 protein homolog; TrEMBL-Plants: tr|V7C241|V7C241_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0059900 LjG1.1_chr2 12590261 12596330 +
2 domain predictions
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LotjaGi3g1v0029700.1
n.a. TBC1 domain family member 22B; TAIR: AT2G30710.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9NU19|TB22B_HUMAN TBC1 domain family member 22B; TrEMBL-Plants: tr|I3T5T6|I3T5T6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0029700 LjG1.1_chr3 3234741 3248614 -
2 domain predictions
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LotjaGi3g1v0030400.1
n.a. TBC1 domain family member; TAIR: AT3G59570.2 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q8BPQ7|SGSM1_MOUSE Small G protein signaling modulator 1; TrEMBL-Plants: tr|A0A072VBU7|A0A072VBU7_MEDTR Rab GTPase activator; Found in the gene: LotjaGi3g1v0030400 LjG1.1_chr3 3283529 3289874 +
2 domain predictions
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LotjaGi3g1v0030400.2
n.a. TBC1 domain family member; TAIR: AT2G43490.4 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q8BPQ7|SGSM1_MOUSE Small G protein signaling modulator 1; TrEMBL-Plants: tr|A0A0R0H545|A0A0R0H545_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0030400 LjG1.1_chr3 3283529 3294851 +
2 domain predictions
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LotjaGi3g1v0030400.3
n.a. TBC1 domain family member; TAIR: AT2G43490.4 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q8BPQ7|SGSM1_MOUSE Small G protein signaling modulator 1; TrEMBL-Plants: tr|A0A0R0GZ87|A0A0R0GZ87_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0030400 LjG1.1_chr3 3283529 3297114 +
2 domain predictions
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LotjaGi3g1v0149400.1
n.a. TBC1 domain family member; TAIR: AT4G27100.2 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|P48365|GYP7_YEAST GTPase-activating protein GYP7; TrEMBL-Plants: tr|A0A151SKJ0|A0A151SKJ0_CAJCA GTPase-activating protein GYP7; Found in the gene: LotjaGi3g1v0149400 LjG1.1_chr3 20139131 20145820 +
2 domain predictions
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LotjaGi3g1v0149400.2
n.a. TBC1 domain family member; TAIR: AT4G27100.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|P48365|GYP7_YEAST GTPase-activating protein GYP7; TrEMBL-Plants: tr|G7JF10|G7JF10_MEDTR Ypt/Rab-GAP domain of gyp1p superfamily protein; Found in the gene: LotjaGi3g1v0149400 LjG1.1_chr3 20139512 20144967 +
2 domain predictions
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LotjaGi3g1v0149400.3
n.a. TBC1 domain family member; TAIR: AT4G27100.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|P48365|GYP7_YEAST GTPase-activating protein GYP7; TrEMBL-Plants: tr|A0A151SKJ0|A0A151SKJ0_CAJCA GTPase-activating protein GYP7; Found in the gene: LotjaGi3g1v0149400 LjG1.1_chr3 20139512 20145003 +
2 domain predictions
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LotjaGi3g1v0237400.1
n.a. TBC1 domain family member; TAIR: AT4G27100.2 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15; TrEMBL-Plants: tr|A0A151RDM2|A0A151RDM2_CAJCA TBC1 domain family member 15; Found in the gene: LotjaGi3g1v0237400 LjG1.1_chr3 38078421 38086283 -
2 domain predictions
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LotjaGi3g1v0237400.2
n.a. TBC1 domain family member; TAIR: AT4G27100.2 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15; TrEMBL-Plants: tr|G7IJN4|G7IJN4_MEDTR Ypt/Rab-GAP domain of gyp1p superfamily protein; Found in the gene: LotjaGi3g1v0237400 LjG1.1_chr3 38079741 38082522 -
2 domain predictions
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LotjaGi3g1v0237400.3
n.a. TBC1 domain family member; TAIR: AT4G27100.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15; TrEMBL-Plants: tr|G7IJN4|G7IJN4_MEDTR Ypt/Rab-GAP domain of gyp1p superfamily protein; Found in the gene: LotjaGi3g1v0237400 LjG1.1_chr3 38079741 38084824 -
2 domain predictions
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LotjaGi3g1v0237400.4
n.a. TBC1 domain family member; TAIR: AT4G27100.2 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15; TrEMBL-Plants: tr|A0A0R0H896|A0A0R0H896_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0237400 LjG1.1_chr3 38079741 38085747 -
2 domain predictions
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LotjaGi3g1v0237400.5
n.a. TBC1 domain family member; TAIR: AT4G27100.2 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15; TrEMBL-Plants: tr|A0A151RDM2|A0A151RDM2_CAJCA TBC1 domain family member 15; Found in the gene: LotjaGi3g1v0237400 LjG1.1_chr3 38079741 38085747 -
2 domain predictions
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LotjaGi4g1v0271200.1
n.a. TBC1 domain family member; TAIR: AT4G13730.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13; TrEMBL-Plants: tr|K7M077|K7M077_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0271200 LjG1.1_chr4 63723991 63727527 +
2 domain predictions
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LotjaGi4g1v0271200.2
n.a. TBC1 domain family member; TAIR: AT4G13730.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13; TrEMBL-Plants: tr|K7M077|K7M077_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0271200 LjG1.1_chr4 63724024 63727421 +
2 domain predictions
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LotjaGi4g1v0274400.1
n.a. RabGAP/TBC domain protein; TAIR: AT5G52580.1 RabGAP/TBC domain-containing protein; Swiss-Prot: sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15; TrEMBL-Plants: tr|G7JE75|G7JE75_MEDTR RabGAP/TBC domain protein; Found in the gene: LotjaGi4g1v0274400 LjG1.1_chr4 64387514 64400524 -
2 domain predictions
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LotjaGi4g1v0373200.1
n.a. TBC1 domain family member; TAIR: AT4G13730.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13; TrEMBL-Plants: tr|I1K3U4|I1K3U4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0373200 LjG1.1_chr4 75296450 75301241 -
2 domain predictions
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LotjaGi5g1v0072600.1
n.a. TBC1 domain family member 8B; TAIR: AT2G37290.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9Z1A9|TBCD8_MOUSE TBC1 domain family member 8; TrEMBL-Plants: tr|A0A072VW47|A0A072VW47_MEDTR RabGAP/TBC domain protein; Found in the gene: LotjaGi5g1v0072600 LjG1.1_chr5 12017932 12027803 +
2 domain predictions
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LotjaGi5g1v0072600.2
n.a. TBC1 domain family member 8B; TAIR: AT2G37290.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9Z1A9|TBCD8_MOUSE TBC1 domain family member 8; TrEMBL-Plants: tr|A0A072VW47|A0A072VW47_MEDTR RabGAP/TBC domain protein; Found in the gene: LotjaGi5g1v0072600 LjG1.1_chr5 12017932 12027862 +
2 domain predictions
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LotjaGi5g1v0072600.3
n.a. TBC1 domain family member 8B; TAIR: AT2G37290.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|C8VDQ4|GYP2_EMENI Putative GTPase-activating protein AN11010; TrEMBL-Plants: tr|A0A0R0HPG3|A0A0R0HPG3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0072600 LjG1.1_chr5 12019968 12027803 +
2 domain predictions
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LotjaGi5g1v0154900.1
n.a. TBC1 domain family member; TAIR: AT2G20440.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15; TrEMBL-Plants: tr|V7BH61|V7BH61_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0154900 LjG1.1_chr5 40178252 40183541 -
2 domain predictions
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LotjaGi5g1v0154900.2
n.a. TBC1 domain family member; TAIR: AT4G28550.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15; TrEMBL-Plants: tr|K7LHB7|K7LHB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0154900 LjG1.1_chr5 40178252 40184237 -
2 domain predictions
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LotjaGi5g1v0154900.3
n.a. TBC1 domain family member; TAIR: AT4G28550.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15; TrEMBL-Plants: tr|K7LHB7|K7LHB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0154900 LjG1.1_chr5 40178614 40183541 -
2 domain predictions
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LotjaGi5g1v0154900.4
n.a. TBC1 domain family member; TAIR: AT2G20440.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15; TrEMBL-Plants: tr|V7BH61|V7BH61_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0154900 LjG1.1_chr5 40179266 40183541 -
2 domain predictions
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LotjaGi5g1v0361900.1
n.a. TBC1 domain family member 8B; TAIR: AT3G55020.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q6ZT07|TBCD9_HUMAN TBC1 domain family member 9; TrEMBL-Plants: tr|A0A151RX07|A0A151RX07_CAJCA TBC1 domain family member 9; Found in the gene: LotjaGi5g1v0361900 LjG1.1_chr5 67581192 67591455 +
2 domain predictions
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LotjaGi5g1v0361900.2
n.a. TBC1 domain family member 8B; TAIR: AT3G55020.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q6ZT07|TBCD9_HUMAN TBC1 domain family member 9; TrEMBL-Plants: tr|A0A151RX07|A0A151RX07_CAJCA TBC1 domain family member 9; Found in the gene: LotjaGi5g1v0361900 LjG1.1_chr5 67581351 67590889 +
2 domain predictions
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LotjaGi6g1v0038900.1
n.a. TBC1 domain family member; TAIR: AT4G13730.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13; TrEMBL-Plants: tr|G7JA63|G7JA63_MEDTR RabGAP/TBC domain protein; Found in the gene: LotjaGi6g1v0038900 LjG1.1_chr6 7549942 7555614 +
2 domain predictions
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LotjaGi6g1v0038900.2
n.a. TBC1 domain family member; TAIR: AT1G04830.3 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13; TrEMBL-Plants: tr|G7JA63|G7JA63_MEDTR RabGAP/TBC domain protein; Found in the gene: LotjaGi6g1v0038900 LjG1.1_chr6 7549997 7555215 +
2 domain predictions
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LotjaGi6g1v0236000.1
n.a. TBC1 domain family member-like protein; TAIR: AT4G29950.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q54VM3|TBC5A_DICDI TBC1 domain family member 5 homolog A; TrEMBL-Plants: tr|G7IG77|G7IG77_MEDTR Ypt/Rab-GAP domain of gyp1p superfamily protein; Found in the gene: LotjaGi6g1v0236000 LjG1.1_chr6 54582628 54588250 -
2 domain predictions
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