Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0275300 |
Transcript ID | LotjaGi4g1v0275300.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Telomere-associated protein RIF1; TAIR: AT4G32910.1 nuclear pore complex Nup85-like protein; Swiss-Prot: sp|Q6PR54|RIF1_MOUSE Telomere-associated protein RIF1; TrEMBL-Plants: tr|K7ML30|K7ML30_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0275300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64548301..64554292) extracted from Lotus japonicus Gifu genome v1.2.
GGTCAATGCGCAACTCCAGAACCGCGTTTTGGCGCGAAAGACTGCTTCTTCTTCCCGTAGAAGCGAGCGAGCGAGGGTTT GATAGCTCAGAAATCTCTGCAACTGCAAGAACCAACAATGGCGGAAGAAGAGATCCATGAAATCCATACCCTGATTTCTT CAAACGACGACTCCAACAAGTGTTCAGGCTACTCAACCCTTCTGCAATTCCAACAACACTCTTGCCTCAACCCTTCTTCC CTCCAATCCCTAGCTCAATCCTCCATTTCCGTAATCTTTTCCATGCTCTCCGATATCTCGCACCACGATGAAGAAATGTG AGCACTCACTTCCACTTTCTCTCGATTCAATCATTCAAATCAAACCTATTTATTTATGTATTTTTCATAATGTTTATTTA ATTTACTTGCTTGTTAGAGCCGCACAAGCGTTGAAGTGTTTGGGATTCATGATTTATCATCCCTCCGTCGTTTCCGCGCT TCGAGGTATCTGGTTTTGCTCTCAACTATGCCATTTGATTCACTTTGATTTTTATGCAGCTTTAATTCTCTCTTGGTTTT GTAGTGGATGATGCCGATTCGATTTTGTGCTCATTGGCTAAACTTATTACAACCACAAAATTGAAGGCTAGTTGTATATT CTGTTTTTTTTTACTTTGATCATTGTTCTAGAGTAGAGAGTTTTTTTCTGTTTCTTAGTTGCATTTGCACTATAGTTGTA TTAACTTTGTTAAATACTTTGCTGCAGTCTGCTTGTAATTTAGGGGTATGGTGCTTATCTGTCCAACAGTTAGGTGCATC GTTGCTCGTTAATCACTTTCATTCTTTGTTGCGGGCAATTGTTCATGCCCTAGATAATCCAATGGGGTCTCTGTCAACAA CATTTGAAGCTACCCAGGTATAGTTCCCTTTCATCAAAAAAATTCTTCAGTGTTTGGGCCCTATGTGAGAAAACAAATAA TAAAAAGAAGAAATTAGACAATGTCCCCTTGTAGTTGTTTTGTAAAATGTACTTGCTTACCAAGTTGATTGGCACAGCAG GAAATCAACTGGTTGAGGCTAGAAATAGGAAATTTGGGGCTAACATCTACATTGAAGCAGAGTTGGGGCTTATGCTTGGT CCTTGCCTATTTCTAGCTGTCTGATAGCTCTAATTTTCTTGCTAATCTGATGGTTCTTAACTTCTTATCTACGATATGAA CCATTATGTGTTTACTCTATGACCCATTAATATGGAAGAAAAAATGGAGACAGTTGAATTCAGAATTTATCCTATAAATC TATTAATCTTCTACCCCCCCCCCCCCACCTCCCCCTGCTGTCACCATAACCTTGAATTGAAACTCTGCGTATGTACTTTA TTTGAACATTATCAATGTTCTACTAGCATGTTGTTCTTTTTTCTTTTAAACTACTGATTGACTAACTAGAAATGTTCTGA TGCATGCCTGGCTGGCTATGTTAGTCTGAACCTTCTTGCGTATTCACTCTCTGAATTCATTTCTAAGTGTAGAAATTCCT CGCGATGCTCATACCTTTCGATGACAGGCTATAATGAAGCTATCTGGCCAGTTAAGTGAGCAAATGAGAGAATCATCCCA TATATGGGCTCCTCCAATATACAGGAGACTTCTCAGCACAGACAAGAGGGAAAAAGATTCCTCAGAGAGGTGCCTGTTGA AGATCAGATCTACTGTCATTCCTCCTTCACTGGATCTCTCCAAGGTACAAAAGCCTTATTCAATAATAAGATATGACTCT GTACTCTTTGTGGCATAGCTATTTTATTATTAGACGCTTGTGCAAATGATTCAAGCTACAATAGAGTCGAGGCAAGTTTG AAACGTAGCTTGCTAGCCCTGCTGCCTGCATTTTGCTATAGTTGACAATTATCCAAATTAGTAGCTTTTTAGGGTGTTGC AAAGTGGAAAACAAAACAGATTTTATATCATGTTCATTGCATGCCATAATTGATCTATAAGGTTCTTGCAATGGTTTAGA CATGTGCTCTTTGGCCTCCTTGCCAACTTCCTTTATCTTTCAACAGGTCCTTGTCAAAGATATGAAGATAAAATTGCTTG ATGGGATGAAGAATTTGCTAGATAAAGGTATGAAGATTCAAGCTATTCGAGCATGGGGATGGTTTGTACGAATACTTGGG TCCCATGCTATGAAGAATAGACATTTAGTAAATGATTTGCTGAAAATTCCTGAGCGTACATTTACAGATCTTGACCCCCA AGTTCAGATTGCTACACAGGTACTGTATGAGTTACTGCATCAACTCATCTACAATTCACGCAGATGAGCTATGTGTGGGT TGCAAAGTTGTTCAATACTTTAACTGACATGACACAGTGGCTTAAATAAATTTGATTGGCATTTGAAGCTTTGTGAATAG AGAACTCACTAGTTATTAATTCATTCACTGATTGCTGCTTATGAGACTTTTTCGTGTGTTCTATGTACAGGTTGCGTGGG AAGGTCTTATTGATGCTCTTGTTCACCATCCAATATTAGGTTCAGAGAAAAATCCACCAGCTGAGGATAATTTTCTTGAG AAACAGCATTCAATTGGAAGGATCAACTGCGACAATCAAGCAAATGGGTTTTCCAAAAGCATAAAGCTAATAATGACTCC ACTGATTGGCATCATGTCTAGTAAATGTGATATATCAGTTCATTCATCCTGCTTGAACACATGGTGTTATTTGCTGCATA AGCTTGATACCTCCATCAACGAACCATCAATGATGAAAATGGTTTTCGAGCCTATTCTTAAAGCAATATTTCAGAATAGA CCTGATAGTAAGACTATCTGCTTATGGAATATGGGCCTTGATCTGTTCAGTGATAGTATTTCACTGAAGTGTAGGGATGC CACCTGCAATGATATTGGACTTTCTGTATCGGGCAAATGCTCTTGGAAGCAACACTCAATTAGATGGCTGCCATGGGATA TCAGCCAGCTGGACTTTTATCTGAATATGATTTATGTTCTATTCTGTCAAGCATCGGATACAACTGTCAATTGTGAGCAT AGAAGTCATGTTTATGATGCTGCCTTAAAGTTATTTATTCAAATTCTGAAAGGGGTCAAACTGGACGTGGAAAGTCCATC TACCAATTATGATGGTATTATGGGGTGCATGAACTCATTACTGACATTCATGAAAAGAGTATGTGATTTTCACCCAGATG GAAGTGAAAGTTATGAAGTGTACTGTACTTCCATTAAGTTTATAGACGCTATCACAAAGGAATTAGGTCCTTCTGTCCTG GGATCTCCTCTGTACAAGTTTTCTTTAGACCTAAAGTACATTAATGACTTACAATCAGTTGATAATAACAACGACCAAAA ATTTCCGAGTGTCAGATGTGTTTCTTATATGGATAAGGTTTCTCCATTGGTTTATTTGATAGCTCTTCACTTTTATATGA TGGTTCAGTTAACAACGAAGTCCCGCCAATCAGACTGCATTTCACAAGGGATGTGTGAATATTTTAAATATATATTCTCT TCAAGTGATCCCCTGGAAAATCTCCTCACCTGTATTGGCCTCATGTACAAACTTGTTCAACCAATTTATTTAAATATATG GATAACAGTGGCTCAAGGTCTGAATAGCTGTGTAGATGATGCAAACTGCAAGTCCCTACAGGAAGCCTTGTCTGACAGCA TTGGATATTCTTCCATATGCCATTTTTTGATTTATCCCATCATGGCACATTCTGAAGTTTCAAGATTGACCTCGACAAAT GCTAATGCCTCTTGGGAGCAGCATCCTGTATTACCAGAAAGAAAGCTGAGGCTTGAACTTGCTATTCAAACTTGGAAATC GCTTTATGGATCTCTTAGTGCTTCAGGCTTTGGATGCTCAACTGCTACCAAGTTCTCTGGGGATCTGTGTACATTGTTGA GTAGGTGCCTTGATGAAAATACGGACTTGCTTGGCAATGACACTGATTTTAAGTTAACATGCAATGATATAGATCTCTGC GTCCTTCACTTATCTGGCAATTTCTTGCTATACATTCTAGAACAGATTCAGACGTCAGAATTAGTTTCTGAAACAGACAG AAGTAGATCTTACTGTGATAGCAAAACACTCTGCAGTATAAGGAATTGCTTAAAATTTTCTTCCAAGTAAGTTCGGACAT GTCTTTCAAGGATAAGATGTGCCTTTCTACATATTTATAAATTTAATTCCTGATCTACCTGTCTTTCTTGCTCTGAATGG GTGAATATCTGTTCCATATCCATATAATGAAATAAAGTTGTATGGAAGAAGTGGCTCTTCAATACAAACCTACTTTTTCA ATAACCTGATAACAATGAAATTGCTTTCATCATTCAGTTTGAAATGTAAAAAGCAATTTCATTGGCATCTCAATTCAATT TTCTTTTCTTTTTTGTACTTCATTTTATATGCTGTTGCTGCCTATTCCCATTTTATGGGGTTAAGTTATTTGAATGTTGA GAACTTGAGATTATGATCACAACTTAGACTAATAGTTTGCTGCCTAGTATGTATTCTGCTTCATTGCTTCGTTGGTACGA ATATCATTTTAATTTTAACCCGACATTTATGATAAACTAACTGACTCTAGTAGCTGTCATGAGCATATTAGTTATTCACA AAACTAAAGGTCTCTTTATATTTAAATTGATGCTGATGATTTTCATGTGGCATTTCTCAGGTATATGAATGTGGCATTTC GTGTGACAGACCCACTGCCTGGTTTTGTTGGGACCTCAAGGTCAGTCAATACAAGTTATCTTCTTCATGCATGTTTGGTT AGTCAATGAGTAACTCTATTTGACTCTCACTTTGTAATAAATCACAGGCTATGTTCTGCATTGACATCCTTTATTAGTTG CCTTCACTGGAAGCAAGATATTCTTCTTTTTATGGAGGTTTGATTCCCTTATTTTTACTTCACAGATCATTAAAGTTGCC TCTACGATTCATTACAGTATTTATACTTCACAGTTCATTAGTGGCTGATGGCTTCAAAGTTGCCTCTACGATTCATTGCA GAGAACCTCCATTACTTTTTTTTCCCGTTCAACTAGTTCATGATATTCCATATATTTGATTGCAGATTCTTTCCTGTCCA CTACTTCAATGGCTATCAAATGCTATGCAGGATGAAAGAACAAGCGATCAACTCGGACTTCTGTGGACTGAAATTCTTAA TTCCTTAAGAAGAAGTCAACCTCCAATAAACTTCGGTTCATCTTTACTCAGACTTCATGAACCTCTGTTTGAGAAAACTC TTGATCACTCATGCCCCTCCATATCAGAGCCAACCATCAATTTTTGGAATTCTACATTTGCTCAACAAATTATTTTGGAT TTCCCTCCAAGTCTTCTTCATGTTTTGGACAAGCTATCCAGAAATGGAAAATTAAAACTCCAGAAGAGAAGTCTACCATC TCTCCAAAAATGTCATTCTCATGAAGAAGCCAATGATGCTCTGCAGGGATACAGGGTCACTGCAACACAGAACAGAACCT CTAAGAGGGTAGAATTATTGTTGGATTCACACAAAGAGGTGCCGCCATTAAGTTTTAAAAAGAAGAGGTTAGAACTGACT GAGCATCAAAAGGAAGTCCGACGAGCACAGCAAGGAAGGAAAAGGGATAACGGAGGGCATGGCCCTGGAATTAGAACTTA CACCAATGCCGACTTTTCACAAGGGCTTGATGATTCGCAAGAGAGCCAGGAGGACATAATAAGAGATTCTGAAGCCATAT TGCAAATGTTGAGGAAAACCATCTAACTAGATGTTAGTGCTGCACTGTATTTTGATTGCTAGTGCTCTGTACAAGTTATA ATGAATGCCTAAATTATTATTGGGAGAATTCTAATTTAGCTTGTCTCGGTAAGCAATTTTTAATTACGAAAATATGAATT AACACCAGATTATAATTAATGCAGCTGGTGTTTGGTCAAGCATTCTTGAGTATTAATCTACTAAGGTCTAAG
CDS sequence (LotjaGi4g1v0275300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGAAGAGATCCATGAAATCCATACCCTGATTTCTTCAAACGACGACTCCAACAAGTGTTCAGGCTACTCAAC CCTTCTGCAATTCCAACAACACTCTTGCCTCAACCCTTCTTCCCTCCAATCCCTAGCTCAATCCTCCATTTCCGTAATCT TTTCCATGCTCTCCGATATCTCGCACCACGATGAAGAAATAGCCGCACAAGCGTTGAAGTGTTTGGGATTCATGATTTAT CATCCCTCCGTCGTTTCCGCGCTTCGAGTGGATGATGCCGATTCGATTTTGTGCTCATTGGCTAAACTTATTACAACCAC AAAATTGAAGTCTGCTTGTAATTTAGGGGTATGGTGCTTATCTGTCCAACAGTTAGGTGCATCGTTGCTCGTTAATCACT TTCATTCTTTGTTGCGGGCAATTGTTCATGCCCTAGATAATCCAATGGGGTCTCTGTCAACAACATTTGAAGCTACCCAG GCTATAATGAAGCTATCTGGCCAGTTAAGTGAGCAAATGAGAGAATCATCCCATATATGGGCTCCTCCAATATACAGGAG ACTTCTCAGCACAGACAAGAGGGAAAAAGATTCCTCAGAGAGGTGCCTGTTGAAGATCAGATCTACTGTCATTCCTCCTT CACTGGATCTCTCCAAGGTCCTTGTCAAAGATATGAAGATAAAATTGCTTGATGGGATGAAGAATTTGCTAGATAAAGGT ATGAAGATTCAAGCTATTCGAGCATGGGGATGGTTTGTACGAATACTTGGGTCCCATGCTATGAAGAATAGACATTTAGT AAATGATTTGCTGAAAATTCCTGAGCGTACATTTACAGATCTTGACCCCCAAGTTCAGATTGCTACACAGGTTGCGTGGG AAGGTCTTATTGATGCTCTTGTTCACCATCCAATATTAGGTTCAGAGAAAAATCCACCAGCTGAGGATAATTTTCTTGAG AAACAGCATTCAATTGGAAGGATCAACTGCGACAATCAAGCAAATGGGTTTTCCAAAAGCATAAAGCTAATAATGACTCC ACTGATTGGCATCATGTCTAGTAAATGTGATATATCAGTTCATTCATCCTGCTTGAACACATGGTGTTATTTGCTGCATA AGCTTGATACCTCCATCAACGAACCATCAATGATGAAAATGGTTTTCGAGCCTATTCTTAAAGCAATATTTCAGAATAGA CCTGATAGTAAGACTATCTGCTTATGGAATATGGGCCTTGATCTGTTCAGTGATAGTATTTCACTGAAGTGTAGGGATGC CACCTGCAATGATATTGGACTTTCTGTATCGGGCAAATGCTCTTGGAAGCAACACTCAATTAGATGGCTGCCATGGGATA TCAGCCAGCTGGACTTTTATCTGAATATGATTTATGTTCTATTCTGTCAAGCATCGGATACAACTGTCAATTGTGAGCAT AGAAGTCATGTTTATGATGCTGCCTTAAAGTTATTTATTCAAATTCTGAAAGGGGTCAAACTGGACGTGGAAAGTCCATC TACCAATTATGATGGTATTATGGGGTGCATGAACTCATTACTGACATTCATGAAAAGAGTATGTGATTTTCACCCAGATG GAAGTGAAAGTTATGAAGTGTACTGTACTTCCATTAAGTTTATAGACGCTATCACAAAGGAATTAGGTCCTTCTGTCCTG GGATCTCCTCTGTACAAGTTTTCTTTAGACCTAAAGTACATTAATGACTTACAATCAGTTGATAATAACAACGACCAAAA ATTTCCGAGTGTCAGATGTGTTTCTTATATGGATAAGGTTTCTCCATTGGTTTATTTGATAGCTCTTCACTTTTATATGA TGGTTCAGTTAACAACGAAGTCCCGCCAATCAGACTGCATTTCACAAGGGATGTGTGAATATTTTAAATATATATTCTCT TCAAGTGATCCCCTGGAAAATCTCCTCACCTGTATTGGCCTCATGTACAAACTTGTTCAACCAATTTATTTAAATATATG GATAACAGTGGCTCAAGGTCTGAATAGCTGTGTAGATGATGCAAACTGCAAGTCCCTACAGGAAGCCTTGTCTGACAGCA TTGGATATTCTTCCATATGCCATTTTTTGATTTATCCCATCATGGCACATTCTGAAGTTTCAAGATTGACCTCGACAAAT GCTAATGCCTCTTGGGAGCAGCATCCTGTATTACCAGAAAGAAAGCTGAGGCTTGAACTTGCTATTCAAACTTGGAAATC GCTTTATGGATCTCTTAGTGCTTCAGGCTTTGGATGCTCAACTGCTACCAAGTTCTCTGGGGATCTGTGTACATTGTTGA GTAGGTGCCTTGATGAAAATACGGACTTGCTTGGCAATGACACTGATTTTAAGTTAACATGCAATGATATAGATCTCTGC GTCCTTCACTTATCTGGCAATTTCTTGCTATACATTCTAGAACAGATTCAGACGTCAGAATTAGTTTCTGAAACAGACAG AAGTAGATCTTACTGTGATAGCAAAACACTCTGCAGTATAAGGAATTGCTTAAAATTTTCTTCCAAGTATATGAATGTGG CATTTCGTGTGACAGACCCACTGCCTGGTTTTGTTGGGACCTCAAGGCTATGTTCTGCATTGACATCCTTTATTAGTTGC CTTCACTGGAAGCAAGATATTCTTCTTTTTATGGAGATTCTTTCCTGTCCACTACTTCAATGGCTATCAAATGCTATGCA GGATGAAAGAACAAGCGATCAACTCGGACTTCTGTGGACTGAAATTCTTAATTCCTTAAGAAGAAGTCAACCTCCAATAA ACTTCGGTTCATCTTTACTCAGACTTCATGAACCTCTGTTTGAGAAAACTCTTGATCACTCATGCCCCTCCATATCAGAG CCAACCATCAATTTTTGGAATTCTACATTTGCTCAACAAATTATTTTGGATTTCCCTCCAAGTCTTCTTCATGTTTTGGA CAAGCTATCCAGAAATGGAAAATTAAAACTCCAGAAGAGAAGTCTACCATCTCTCCAAAAATGTCATTCTCATGAAGAAG CCAATGATGCTCTGCAGGGATACAGGGTCACTGCAACACAGAACAGAACCTCTAAGAGGGTAGAATTATTGTTGGATTCA CACAAAGAGGTGCCGCCATTAAGTTTTAAAAAGAAGAGGTTAGAACTGACTGAGCATCAAAAGGAAGTCCGACGAGCACA GCAAGGAAGGAAAAGGGATAACGGAGGGCATGGCCCTGGAATTAGAACTTACACCAATGCCGACTTTTCACAAGGGCTTG ATGATTCGCAAGAGAGCCAGGAGGACATAATAAGAGATTCTGAAGCCATATTGCAAATGTTGAGGAAAACCATCTAA
Protein sequence (LotjaGi4g1v0275300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEEIHEIHTLISSNDDSNKCSGYSTLLQFQQHSCLNPSSLQSLAQSSISVIFSMLSDISHHDEEIAAQALKCLGFMIY HPSVVSALRVDDADSILCSLAKLITTTKLKSACNLGVWCLSVQQLGASLLVNHFHSLLRAIVHALDNPMGSLSTTFEATQ AIMKLSGQLSEQMRESSHIWAPPIYRRLLSTDKREKDSSERCLLKIRSTVIPPSLDLSKVLVKDMKIKLLDGMKNLLDKG MKIQAIRAWGWFVRILGSHAMKNRHLVNDLLKIPERTFTDLDPQVQIATQVAWEGLIDALVHHPILGSEKNPPAEDNFLE KQHSIGRINCDNQANGFSKSIKLIMTPLIGIMSSKCDISVHSSCLNTWCYLLHKLDTSINEPSMMKMVFEPILKAIFQNR PDSKTICLWNMGLDLFSDSISLKCRDATCNDIGLSVSGKCSWKQHSIRWLPWDISQLDFYLNMIYVLFCQASDTTVNCEH RSHVYDAALKLFIQILKGVKLDVESPSTNYDGIMGCMNSLLTFMKRVCDFHPDGSESYEVYCTSIKFIDAITKELGPSVL GSPLYKFSLDLKYINDLQSVDNNNDQKFPSVRCVSYMDKVSPLVYLIALHFYMMVQLTTKSRQSDCISQGMCEYFKYIFS SSDPLENLLTCIGLMYKLVQPIYLNIWITVAQGLNSCVDDANCKSLQEALSDSIGYSSICHFLIYPIMAHSEVSRLTSTN ANASWEQHPVLPERKLRLELAIQTWKSLYGSLSASGFGCSTATKFSGDLCTLLSRCLDENTDLLGNDTDFKLTCNDIDLC VLHLSGNFLLYILEQIQTSELVSETDRSRSYCDSKTLCSIRNCLKFSSKYMNVAFRVTDPLPGFVGTSRLCSALTSFISC LHWKQDILLFMEILSCPLLQWLSNAMQDERTSDQLGLLWTEILNSLRRSQPPINFGSSLLRLHEPLFEKTLDHSCPSISE PTINFWNSTFAQQIILDFPPSLLHVLDKLSRNGKLKLQKRSLPSLQKCHSHEEANDALQGYRVTATQNRTSKRVELLLDS HKEVPPLSFKKKRLELTEHQKEVRRAQQGRKRDNGGHGPGIRTYTNADFSQGLDDSQESQEDIIRDSEAILQMLRKTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 11 | 660 | 650 | 6.1E-9 | ||
PANTHER | 14 | 1095 | 1082 | 4.6E-229 | – | |
Pfam | 17 | 376 | 360 | 5.7E-31 | ||
MobiDBLite | 1059 | 1077 | 19 | - | – | |
MobiDBLite | 1059 | 1101 | 43 | - | – | |
Coils | 1104 | 1118 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0275300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…