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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0275300 |
| Transcript ID | LotjaGi4g1v0275300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Telomere-associated protein RIF1; TAIR: AT4G32910.1 nuclear pore complex Nup85-like protein; Swiss-Prot: sp|Q6PR54|RIF1_MOUSE Telomere-associated protein RIF1; TrEMBL-Plants: tr|K7ML30|K7ML30_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0275300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:64548301..64554292) extracted from Lotus japonicus Gifu genome v1.2.
GGTCAATGCGCAACTCCAGAACCGCGTTTTGGCGCGAAAGACTGCTTCTTCTTCCCGTAGAAGCGAGCGAGCGAGGGTTT GATAGCTCAGAAATCTCTGCAACTGCAAGAACCAACAATGGCGGAAGAAGAGATCCATGAAATCCATACCCTGATTTCTT CAAACGACGACTCCAACAAGTGTTCAGGCTACTCAACCCTTCTGCAATTCCAACAACACTCTTGCCTCAACCCTTCTTCC CTCCAATCCCTAGCTCAATCCTCCATTTCCGTAATCTTTTCCATGCTCTCCGATATCTCGCACCACGATGAAGAAATGTG AGCACTCACTTCCACTTTCTCTCGATTCAATCATTCAAATCAAACCTATTTATTTATGTATTTTTCATAATGTTTATTTA ATTTACTTGCTTGTTAGAGCCGCACAAGCGTTGAAGTGTTTGGGATTCATGATTTATCATCCCTCCGTCGTTTCCGCGCT TCGAGGTATCTGGTTTTGCTCTCAACTATGCCATTTGATTCACTTTGATTTTTATGCAGCTTTAATTCTCTCTTGGTTTT GTAGTGGATGATGCCGATTCGATTTTGTGCTCATTGGCTAAACTTATTACAACCACAAAATTGAAGGCTAGTTGTATATT CTGTTTTTTTTTACTTTGATCATTGTTCTAGAGTAGAGAGTTTTTTTCTGTTTCTTAGTTGCATTTGCACTATAGTTGTA TTAACTTTGTTAAATACTTTGCTGCAGTCTGCTTGTAATTTAGGGGTATGGTGCTTATCTGTCCAACAGTTAGGTGCATC GTTGCTCGTTAATCACTTTCATTCTTTGTTGCGGGCAATTGTTCATGCCCTAGATAATCCAATGGGGTCTCTGTCAACAA CATTTGAAGCTACCCAGGTATAGTTCCCTTTCATCAAAAAAATTCTTCAGTGTTTGGGCCCTATGTGAGAAAACAAATAA TAAAAAGAAGAAATTAGACAATGTCCCCTTGTAGTTGTTTTGTAAAATGTACTTGCTTACCAAGTTGATTGGCACAGCAG GAAATCAACTGGTTGAGGCTAGAAATAGGAAATTTGGGGCTAACATCTACATTGAAGCAGAGTTGGGGCTTATGCTTGGT CCTTGCCTATTTCTAGCTGTCTGATAGCTCTAATTTTCTTGCTAATCTGATGGTTCTTAACTTCTTATCTACGATATGAA CCATTATGTGTTTACTCTATGACCCATTAATATGGAAGAAAAAATGGAGACAGTTGAATTCAGAATTTATCCTATAAATC TATTAATCTTCTACCCCCCCCCCCCCACCTCCCCCTGCTGTCACCATAACCTTGAATTGAAACTCTGCGTATGTACTTTA TTTGAACATTATCAATGTTCTACTAGCATGTTGTTCTTTTTTCTTTTAAACTACTGATTGACTAACTAGAAATGTTCTGA TGCATGCCTGGCTGGCTATGTTAGTCTGAACCTTCTTGCGTATTCACTCTCTGAATTCATTTCTAAGTGTAGAAATTCCT CGCGATGCTCATACCTTTCGATGACAGGCTATAATGAAGCTATCTGGCCAGTTAAGTGAGCAAATGAGAGAATCATCCCA TATATGGGCTCCTCCAATATACAGGAGACTTCTCAGCACAGACAAGAGGGAAAAAGATTCCTCAGAGAGGTGCCTGTTGA AGATCAGATCTACTGTCATTCCTCCTTCACTGGATCTCTCCAAGGTACAAAAGCCTTATTCAATAATAAGATATGACTCT GTACTCTTTGTGGCATAGCTATTTTATTATTAGACGCTTGTGCAAATGATTCAAGCTACAATAGAGTCGAGGCAAGTTTG AAACGTAGCTTGCTAGCCCTGCTGCCTGCATTTTGCTATAGTTGACAATTATCCAAATTAGTAGCTTTTTAGGGTGTTGC AAAGTGGAAAACAAAACAGATTTTATATCATGTTCATTGCATGCCATAATTGATCTATAAGGTTCTTGCAATGGTTTAGA CATGTGCTCTTTGGCCTCCTTGCCAACTTCCTTTATCTTTCAACAGGTCCTTGTCAAAGATATGAAGATAAAATTGCTTG ATGGGATGAAGAATTTGCTAGATAAAGGTATGAAGATTCAAGCTATTCGAGCATGGGGATGGTTTGTACGAATACTTGGG TCCCATGCTATGAAGAATAGACATTTAGTAAATGATTTGCTGAAAATTCCTGAGCGTACATTTACAGATCTTGACCCCCA AGTTCAGATTGCTACACAGGTACTGTATGAGTTACTGCATCAACTCATCTACAATTCACGCAGATGAGCTATGTGTGGGT TGCAAAGTTGTTCAATACTTTAACTGACATGACACAGTGGCTTAAATAAATTTGATTGGCATTTGAAGCTTTGTGAATAG AGAACTCACTAGTTATTAATTCATTCACTGATTGCTGCTTATGAGACTTTTTCGTGTGTTCTATGTACAGGTTGCGTGGG AAGGTCTTATTGATGCTCTTGTTCACCATCCAATATTAGGTTCAGAGAAAAATCCACCAGCTGAGGATAATTTTCTTGAG AAACAGCATTCAATTGGAAGGATCAACTGCGACAATCAAGCAAATGGGTTTTCCAAAAGCATAAAGCTAATAATGACTCC ACTGATTGGCATCATGTCTAGTAAATGTGATATATCAGTTCATTCATCCTGCTTGAACACATGGTGTTATTTGCTGCATA AGCTTGATACCTCCATCAACGAACCATCAATGATGAAAATGGTTTTCGAGCCTATTCTTAAAGCAATATTTCAGAATAGA CCTGATAGTAAGACTATCTGCTTATGGAATATGGGCCTTGATCTGTTCAGTGATAGTATTTCACTGAAGTGTAGGGATGC CACCTGCAATGATATTGGACTTTCTGTATCGGGCAAATGCTCTTGGAAGCAACACTCAATTAGATGGCTGCCATGGGATA TCAGCCAGCTGGACTTTTATCTGAATATGATTTATGTTCTATTCTGTCAAGCATCGGATACAACTGTCAATTGTGAGCAT AGAAGTCATGTTTATGATGCTGCCTTAAAGTTATTTATTCAAATTCTGAAAGGGGTCAAACTGGACGTGGAAAGTCCATC TACCAATTATGATGGTATTATGGGGTGCATGAACTCATTACTGACATTCATGAAAAGAGTATGTGATTTTCACCCAGATG GAAGTGAAAGTTATGAAGTGTACTGTACTTCCATTAAGTTTATAGACGCTATCACAAAGGAATTAGGTCCTTCTGTCCTG GGATCTCCTCTGTACAAGTTTTCTTTAGACCTAAAGTACATTAATGACTTACAATCAGTTGATAATAACAACGACCAAAA ATTTCCGAGTGTCAGATGTGTTTCTTATATGGATAAGGTTTCTCCATTGGTTTATTTGATAGCTCTTCACTTTTATATGA TGGTTCAGTTAACAACGAAGTCCCGCCAATCAGACTGCATTTCACAAGGGATGTGTGAATATTTTAAATATATATTCTCT TCAAGTGATCCCCTGGAAAATCTCCTCACCTGTATTGGCCTCATGTACAAACTTGTTCAACCAATTTATTTAAATATATG GATAACAGTGGCTCAAGGTCTGAATAGCTGTGTAGATGATGCAAACTGCAAGTCCCTACAGGAAGCCTTGTCTGACAGCA TTGGATATTCTTCCATATGCCATTTTTTGATTTATCCCATCATGGCACATTCTGAAGTTTCAAGATTGACCTCGACAAAT GCTAATGCCTCTTGGGAGCAGCATCCTGTATTACCAGAAAGAAAGCTGAGGCTTGAACTTGCTATTCAAACTTGGAAATC GCTTTATGGATCTCTTAGTGCTTCAGGCTTTGGATGCTCAACTGCTACCAAGTTCTCTGGGGATCTGTGTACATTGTTGA GTAGGTGCCTTGATGAAAATACGGACTTGCTTGGCAATGACACTGATTTTAAGTTAACATGCAATGATATAGATCTCTGC GTCCTTCACTTATCTGGCAATTTCTTGCTATACATTCTAGAACAGATTCAGACGTCAGAATTAGTTTCTGAAACAGACAG AAGTAGATCTTACTGTGATAGCAAAACACTCTGCAGTATAAGGAATTGCTTAAAATTTTCTTCCAAGTAAGTTCGGACAT GTCTTTCAAGGATAAGATGTGCCTTTCTACATATTTATAAATTTAATTCCTGATCTACCTGTCTTTCTTGCTCTGAATGG GTGAATATCTGTTCCATATCCATATAATGAAATAAAGTTGTATGGAAGAAGTGGCTCTTCAATACAAACCTACTTTTTCA ATAACCTGATAACAATGAAATTGCTTTCATCATTCAGTTTGAAATGTAAAAAGCAATTTCATTGGCATCTCAATTCAATT TTCTTTTCTTTTTTGTACTTCATTTTATATGCTGTTGCTGCCTATTCCCATTTTATGGGGTTAAGTTATTTGAATGTTGA GAACTTGAGATTATGATCACAACTTAGACTAATAGTTTGCTGCCTAGTATGTATTCTGCTTCATTGCTTCGTTGGTACGA ATATCATTTTAATTTTAACCCGACATTTATGATAAACTAACTGACTCTAGTAGCTGTCATGAGCATATTAGTTATTCACA AAACTAAAGGTCTCTTTATATTTAAATTGATGCTGATGATTTTCATGTGGCATTTCTCAGGTATATGAATGTGGCATTTC GTGTGACAGACCCACTGCCTGGTTTTGTTGGGACCTCAAGGTCAGTCAATACAAGTTATCTTCTTCATGCATGTTTGGTT AGTCAATGAGTAACTCTATTTGACTCTCACTTTGTAATAAATCACAGGCTATGTTCTGCATTGACATCCTTTATTAGTTG CCTTCACTGGAAGCAAGATATTCTTCTTTTTATGGAGGTTTGATTCCCTTATTTTTACTTCACAGATCATTAAAGTTGCC TCTACGATTCATTACAGTATTTATACTTCACAGTTCATTAGTGGCTGATGGCTTCAAAGTTGCCTCTACGATTCATTGCA GAGAACCTCCATTACTTTTTTTTCCCGTTCAACTAGTTCATGATATTCCATATATTTGATTGCAGATTCTTTCCTGTCCA CTACTTCAATGGCTATCAAATGCTATGCAGGATGAAAGAACAAGCGATCAACTCGGACTTCTGTGGACTGAAATTCTTAA TTCCTTAAGAAGAAGTCAACCTCCAATAAACTTCGGTTCATCTTTACTCAGACTTCATGAACCTCTGTTTGAGAAAACTC TTGATCACTCATGCCCCTCCATATCAGAGCCAACCATCAATTTTTGGAATTCTACATTTGCTCAACAAATTATTTTGGAT TTCCCTCCAAGTCTTCTTCATGTTTTGGACAAGCTATCCAGAAATGGAAAATTAAAACTCCAGAAGAGAAGTCTACCATC TCTCCAAAAATGTCATTCTCATGAAGAAGCCAATGATGCTCTGCAGGGATACAGGGTCACTGCAACACAGAACAGAACCT CTAAGAGGGTAGAATTATTGTTGGATTCACACAAAGAGGTGCCGCCATTAAGTTTTAAAAAGAAGAGGTTAGAACTGACT GAGCATCAAAAGGAAGTCCGACGAGCACAGCAAGGAAGGAAAAGGGATAACGGAGGGCATGGCCCTGGAATTAGAACTTA CACCAATGCCGACTTTTCACAAGGGCTTGATGATTCGCAAGAGAGCCAGGAGGACATAATAAGAGATTCTGAAGCCATAT TGCAAATGTTGAGGAAAACCATCTAACTAGATGTTAGTGCTGCACTGTATTTTGATTGCTAGTGCTCTGTACAAGTTATA ATGAATGCCTAAATTATTATTGGGAGAATTCTAATTTAGCTTGTCTCGGTAAGCAATTTTTAATTACGAAAATATGAATT AACACCAGATTATAATTAATGCAGCTGGTGTTTGGTCAAGCATTCTTGAGTATTAATCTACTAAGGTCTAAG
CDS sequence (LotjaGi4g1v0275300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGAAGAGATCCATGAAATCCATACCCTGATTTCTTCAAACGACGACTCCAACAAGTGTTCAGGCTACTCAAC CCTTCTGCAATTCCAACAACACTCTTGCCTCAACCCTTCTTCCCTCCAATCCCTAGCTCAATCCTCCATTTCCGTAATCT TTTCCATGCTCTCCGATATCTCGCACCACGATGAAGAAATAGCCGCACAAGCGTTGAAGTGTTTGGGATTCATGATTTAT CATCCCTCCGTCGTTTCCGCGCTTCGAGTGGATGATGCCGATTCGATTTTGTGCTCATTGGCTAAACTTATTACAACCAC AAAATTGAAGTCTGCTTGTAATTTAGGGGTATGGTGCTTATCTGTCCAACAGTTAGGTGCATCGTTGCTCGTTAATCACT TTCATTCTTTGTTGCGGGCAATTGTTCATGCCCTAGATAATCCAATGGGGTCTCTGTCAACAACATTTGAAGCTACCCAG GCTATAATGAAGCTATCTGGCCAGTTAAGTGAGCAAATGAGAGAATCATCCCATATATGGGCTCCTCCAATATACAGGAG ACTTCTCAGCACAGACAAGAGGGAAAAAGATTCCTCAGAGAGGTGCCTGTTGAAGATCAGATCTACTGTCATTCCTCCTT CACTGGATCTCTCCAAGGTCCTTGTCAAAGATATGAAGATAAAATTGCTTGATGGGATGAAGAATTTGCTAGATAAAGGT ATGAAGATTCAAGCTATTCGAGCATGGGGATGGTTTGTACGAATACTTGGGTCCCATGCTATGAAGAATAGACATTTAGT AAATGATTTGCTGAAAATTCCTGAGCGTACATTTACAGATCTTGACCCCCAAGTTCAGATTGCTACACAGGTTGCGTGGG AAGGTCTTATTGATGCTCTTGTTCACCATCCAATATTAGGTTCAGAGAAAAATCCACCAGCTGAGGATAATTTTCTTGAG AAACAGCATTCAATTGGAAGGATCAACTGCGACAATCAAGCAAATGGGTTTTCCAAAAGCATAAAGCTAATAATGACTCC ACTGATTGGCATCATGTCTAGTAAATGTGATATATCAGTTCATTCATCCTGCTTGAACACATGGTGTTATTTGCTGCATA AGCTTGATACCTCCATCAACGAACCATCAATGATGAAAATGGTTTTCGAGCCTATTCTTAAAGCAATATTTCAGAATAGA CCTGATAGTAAGACTATCTGCTTATGGAATATGGGCCTTGATCTGTTCAGTGATAGTATTTCACTGAAGTGTAGGGATGC CACCTGCAATGATATTGGACTTTCTGTATCGGGCAAATGCTCTTGGAAGCAACACTCAATTAGATGGCTGCCATGGGATA TCAGCCAGCTGGACTTTTATCTGAATATGATTTATGTTCTATTCTGTCAAGCATCGGATACAACTGTCAATTGTGAGCAT AGAAGTCATGTTTATGATGCTGCCTTAAAGTTATTTATTCAAATTCTGAAAGGGGTCAAACTGGACGTGGAAAGTCCATC TACCAATTATGATGGTATTATGGGGTGCATGAACTCATTACTGACATTCATGAAAAGAGTATGTGATTTTCACCCAGATG GAAGTGAAAGTTATGAAGTGTACTGTACTTCCATTAAGTTTATAGACGCTATCACAAAGGAATTAGGTCCTTCTGTCCTG GGATCTCCTCTGTACAAGTTTTCTTTAGACCTAAAGTACATTAATGACTTACAATCAGTTGATAATAACAACGACCAAAA ATTTCCGAGTGTCAGATGTGTTTCTTATATGGATAAGGTTTCTCCATTGGTTTATTTGATAGCTCTTCACTTTTATATGA TGGTTCAGTTAACAACGAAGTCCCGCCAATCAGACTGCATTTCACAAGGGATGTGTGAATATTTTAAATATATATTCTCT TCAAGTGATCCCCTGGAAAATCTCCTCACCTGTATTGGCCTCATGTACAAACTTGTTCAACCAATTTATTTAAATATATG GATAACAGTGGCTCAAGGTCTGAATAGCTGTGTAGATGATGCAAACTGCAAGTCCCTACAGGAAGCCTTGTCTGACAGCA TTGGATATTCTTCCATATGCCATTTTTTGATTTATCCCATCATGGCACATTCTGAAGTTTCAAGATTGACCTCGACAAAT GCTAATGCCTCTTGGGAGCAGCATCCTGTATTACCAGAAAGAAAGCTGAGGCTTGAACTTGCTATTCAAACTTGGAAATC GCTTTATGGATCTCTTAGTGCTTCAGGCTTTGGATGCTCAACTGCTACCAAGTTCTCTGGGGATCTGTGTACATTGTTGA GTAGGTGCCTTGATGAAAATACGGACTTGCTTGGCAATGACACTGATTTTAAGTTAACATGCAATGATATAGATCTCTGC GTCCTTCACTTATCTGGCAATTTCTTGCTATACATTCTAGAACAGATTCAGACGTCAGAATTAGTTTCTGAAACAGACAG AAGTAGATCTTACTGTGATAGCAAAACACTCTGCAGTATAAGGAATTGCTTAAAATTTTCTTCCAAGTATATGAATGTGG CATTTCGTGTGACAGACCCACTGCCTGGTTTTGTTGGGACCTCAAGGCTATGTTCTGCATTGACATCCTTTATTAGTTGC CTTCACTGGAAGCAAGATATTCTTCTTTTTATGGAGATTCTTTCCTGTCCACTACTTCAATGGCTATCAAATGCTATGCA GGATGAAAGAACAAGCGATCAACTCGGACTTCTGTGGACTGAAATTCTTAATTCCTTAAGAAGAAGTCAACCTCCAATAA ACTTCGGTTCATCTTTACTCAGACTTCATGAACCTCTGTTTGAGAAAACTCTTGATCACTCATGCCCCTCCATATCAGAG CCAACCATCAATTTTTGGAATTCTACATTTGCTCAACAAATTATTTTGGATTTCCCTCCAAGTCTTCTTCATGTTTTGGA CAAGCTATCCAGAAATGGAAAATTAAAACTCCAGAAGAGAAGTCTACCATCTCTCCAAAAATGTCATTCTCATGAAGAAG CCAATGATGCTCTGCAGGGATACAGGGTCACTGCAACACAGAACAGAACCTCTAAGAGGGTAGAATTATTGTTGGATTCA CACAAAGAGGTGCCGCCATTAAGTTTTAAAAAGAAGAGGTTAGAACTGACTGAGCATCAAAAGGAAGTCCGACGAGCACA GCAAGGAAGGAAAAGGGATAACGGAGGGCATGGCCCTGGAATTAGAACTTACACCAATGCCGACTTTTCACAAGGGCTTG ATGATTCGCAAGAGAGCCAGGAGGACATAATAAGAGATTCTGAAGCCATATTGCAAATGTTGAGGAAAACCATCTAA
Protein sequence (LotjaGi4g1v0275300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEEIHEIHTLISSNDDSNKCSGYSTLLQFQQHSCLNPSSLQSLAQSSISVIFSMLSDISHHDEEIAAQALKCLGFMIY HPSVVSALRVDDADSILCSLAKLITTTKLKSACNLGVWCLSVQQLGASLLVNHFHSLLRAIVHALDNPMGSLSTTFEATQ AIMKLSGQLSEQMRESSHIWAPPIYRRLLSTDKREKDSSERCLLKIRSTVIPPSLDLSKVLVKDMKIKLLDGMKNLLDKG MKIQAIRAWGWFVRILGSHAMKNRHLVNDLLKIPERTFTDLDPQVQIATQVAWEGLIDALVHHPILGSEKNPPAEDNFLE KQHSIGRINCDNQANGFSKSIKLIMTPLIGIMSSKCDISVHSSCLNTWCYLLHKLDTSINEPSMMKMVFEPILKAIFQNR PDSKTICLWNMGLDLFSDSISLKCRDATCNDIGLSVSGKCSWKQHSIRWLPWDISQLDFYLNMIYVLFCQASDTTVNCEH RSHVYDAALKLFIQILKGVKLDVESPSTNYDGIMGCMNSLLTFMKRVCDFHPDGSESYEVYCTSIKFIDAITKELGPSVL GSPLYKFSLDLKYINDLQSVDNNNDQKFPSVRCVSYMDKVSPLVYLIALHFYMMVQLTTKSRQSDCISQGMCEYFKYIFS SSDPLENLLTCIGLMYKLVQPIYLNIWITVAQGLNSCVDDANCKSLQEALSDSIGYSSICHFLIYPIMAHSEVSRLTSTN ANASWEQHPVLPERKLRLELAIQTWKSLYGSLSASGFGCSTATKFSGDLCTLLSRCLDENTDLLGNDTDFKLTCNDIDLC VLHLSGNFLLYILEQIQTSELVSETDRSRSYCDSKTLCSIRNCLKFSSKYMNVAFRVTDPLPGFVGTSRLCSALTSFISC LHWKQDILLFMEILSCPLLQWLSNAMQDERTSDQLGLLWTEILNSLRRSQPPINFGSSLLRLHEPLFEKTLDHSCPSISE PTINFWNSTFAQQIILDFPPSLLHVLDKLSRNGKLKLQKRSLPSLQKCHSHEEANDALQGYRVTATQNRTSKRVELLLDS HKEVPPLSFKKKRLELTEHQKEVRRAQQGRKRDNGGHGPGIRTYTNADFSQGLDDSQESQEDIIRDSEAILQMLRKTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 11 | 660 | 650 | 6.1E-9 | ||
| PANTHER | 14 | 1095 | 1082 | 4.6E-229 | – | |
| Pfam | 17 | 376 | 360 | 5.7E-31 | ||
| MobiDBLite | 1059 | 1077 | 19 | - | – | |
| MobiDBLite | 1059 | 1101 | 43 | - | – | |
| Coils | 1104 | 1118 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0275300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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