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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0291200 |
| Transcript ID | LotjaGi4g1v0291200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear pore complex protein NUP43; TAIR: AT4G30840.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q24JJ9|NUP43_ARATH Nuclear pore complex protein NUP43; TrEMBL-Plants: tr|G7JFH6|G7JFH6_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi4g1v0291200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:66302147..66305498) extracted from Lotus japonicus Gifu genome v1.2.
TACGAACATGACACACAAAGTGACAAACTGACAAACACATTTAAAGTGTGTTTACTTGCAGAATAGAAATGGTGATAAAC GACGACAACTTACTTACAAGTGTAACCACAACGTCAACATAGCGAATTGGGTGACAGAGAGCGACGGAAAGGAGTGAGGA TGACTAGTGAAGATGGGTATGTGTATGAGGGGTGTGAGAGTAAAATGAAGGAGTCAAGGAGGGAGGATGTCAAGTGGTGG GGAATCAAGGTGAGTATTTTCTCATTGGATGTGAGGTGGTACCAATAATAACTCCCTTTTTAGTATTAACCAAAGTATCG CTACAATCAATAGTCGTGAAACTAATCTCTTATTTCTCTATCAACGCATTAAATAGTATGTTATGTACGGCCAACACTCT CTTTGATATTTTTTTTCAACGGATAGACATAAATAAAAACCTCAACATGAAAAAACATTAGAAATTTTCCCATAAAAAAA AATCATAATCCCTTCTCACTAGTGTTGAAAAAAGTGTTATGAAGAGTACTAGGGGCATTTGAGTCCAAAACAAAAAAACA AGTTCCCACCCTTTTTCTGCAAATCACAAGGTTCTGCTGTTGTTGTTGAAGAAAACCCTTGGCAATGGCAGTGACGGCAA ATTCAGAAACCTCAAGAATCCACAGATTCCCACAATACAAATACATCGACGCAGTTCGTTGGCTTCCTCTGGTTTCAGCA TTCGATCGCTTCGCAGTTCTCGCTTCCTTCGACTTCGATTCCGATGCTTCTTCCATCGAAATCCACTCTTTCAAACCAAA CCCTCTTTCCTTCGAACCCCAATCTTCATGGACTCCACCTTCTCGCGTTTCCTCCCTCAAGGCCGCGCAGTTCCTTCAGA AGACCGTCATCGCCGCCTCAACCTCCTCCGGCTCCCTCCACTTCCTGTTCTCCGATCCCGCCGACGCCACGCTGGAATCG GAGGTTTCGGTGGCCGAGGGGAAGCTTCACTCGGTGCCTAAGTCTTGTGTTGATTTGATGGATGGTGGGGTGGAGTGTGT GACGGCTGGTGAAGATGGGAGGGTGAACTTGGTGACAGTTGGGAACTCTAACTTGAATTACCGGCGGTTGTTTGATAGCG GTGGGTTGGTGTCGTACACGGCGGTGAAGTGGGCGTCGCCTACGGAGTTCGCTACCGGTGGTTATGGGTTTGGTCTTCAA TGGTGGGATCAGAGGAAGCCGGGTGGACCGGTTTCTCAGTTTAAGGGTAACTGGTAAGAAGAAAGAAGAGCAACTTTTTT GTGAGTGTTGGAGATATGATATGAGAGTTAATGCTTGGTTTTGTTTCAGGGATAAAAAATTGACTGCTGGAATTGTACAC TCTATTGACATTCATCCATCAAGGAAGCACACTTGCCTGGTAAAATGGCTATGCCCCTTGTCATAACTTCTTGTAATGTT CAGTATTTTTTAGAAGATAATCTATTCATGTTGCTTTATGAATGTGACATTGTGATAGGAGAAATAGAGAATGTGTCTAT GATATATTGCTAAGAATATAGATTCTTTCATAGTGCAAGGAGTGTATACCCCTTTTGATTGTTGGTATGATTGGAATTTG GAAGGAAAGAGAAATAGAGCTGAGTTGTGAGGTGGTTATAAAAAATTGAGGATGAATAGCACACTATTGCTAATGTGTTC TATTTATAATTTAACAAAGGAAAAAGATATATGGCATGAAAATTCCGTTCACGATGATGCACGAGTGTGTTATTAGTTTT ACTTATATCACATTCCTGTTACCTTTTTAATTGTTAATTATGTTTTTAAAAAATATGAGAGGTCCACGTTTACAATCGTG CAAGGTGTGCATCAATTCTTGTCGTGCCAAATAGAATGACTCAAAAATTGAATGCCACTTTAATAACATTGTGGGAGTTA TGTAGCTGTTTTTTTGCTTCTGTGATGAGTAACACCTGCTTTGACATCAGTCCCAGATGAACTGTTCTTGATTCCTTGTG GAAGATTTATTGAAACTGGTGGTTTGGACTTTGGAGATGCTTAGTGCTTTTACTTGTATGCTTCTGACAATTTCTGGAAT GGTAATGTATTCTCAGGCTGGTGGCTCCTTAGGCACTGTTTTTGCGTGGGATCTTAGGTGGCAACAACAACCGATTGTAC TTGCGGGATCAGCAGCAGGGGCTGGGGCTGTGGACACTACAGTGCAGTCAATATCTGAAAGTGAGGTTTGGGAGGTGCAG TATGATCGCTGCATTAAATCAAACGCTTCATCTACCCGGATCTTACCTGCCATGATCTGTTCAGAGGATGGAATTCTTGC TGTGGCTGAGCAAGGTATATATGTTCATCCCGATTTCCTTCATGTTAAAATGCCATTTCATCATGAATGAGATCTCGTAC ATTGTTTGTTTACAAGTTAATGGAGTCTTCATCCATGTCTATTGAACAAGAGAAGTTTATTGAAATGGGGAGTGAGATTG ATTAGGTGCATCTCTAATGTAATTGAATTCTTACATTGCATAGGTGAGGAACCTATTGAGCTGCTGGCAGAACCTTGCGC CATCAATAGCTTTGATATTGATCGTCATAATCCATCGGTAAGTAGAGGCACTAATATCGTTACTATTATGCGGGAATAAC TTGATGGTGTTTTACAAGTAACTCTTGTTTTTTAAAGCTTACCAAATGGTTTATTTATTAAAAATGAATAGAATGAAAAT GGTAGAAGGGAAAAGTAGTGAAAATTTTGAAGGTGGGCAAGTTCCTTTCTGATGATTCAATCGATTGTCATGCAGGATGT AATATGTAGTTTAGAGTGGGAAGCAGTAGCAATAGTGACAAGGTAATAACATTCAGAGTGATACTCTTTGGTGGCTTGAA ATCAGAAAGGGACACACTTGGTGGCTGATGGAAGAAGTGGAGCTTTTCAGAGGCTATTATGCTTATTCAGGCTCCAATAT TCTATTCCTTTTGTAAAGCCATTTGTATGCAAATGGATTTTGGGATTGTACAATATGCAGCATGTGTGAAAGAGACTTAA AAGAGGCACATTGGATGAATAGTTGAATACCACCACCAGTTTTACCGATGAATGTATTATTCCTTGGCAGTAAATGGTGG TCGGAATTGTATCCTGGATGTCATTGTATCTGTTAACTACTTGATTGTCATGCTGGAACCTGATCCTGTCTAACAATTTT ACTGTGCCTTCGATGCTGTGTTCTACAGAAGTCAAGAAAATATTCTGAAATTCTGAAAAACTAATTCTATGCAATCAACC TTGATATTCATTTCTGAACTGACTGAACACACTACCAAGTCAATTAGTATCTTCTCAATTATTTGAGGAGTT
CDS sequence (LotjaGi4g1v0291200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGTGACGGCAAATTCAGAAACCTCAAGAATCCACAGATTCCCACAATACAAATACATCGACGCAGTTCGTTGGCT TCCTCTGGTTTCAGCATTCGATCGCTTCGCAGTTCTCGCTTCCTTCGACTTCGATTCCGATGCTTCTTCCATCGAAATCC ACTCTTTCAAACCAAACCCTCTTTCCTTCGAACCCCAATCTTCATGGACTCCACCTTCTCGCGTTTCCTCCCTCAAGGCC GCGCAGTTCCTTCAGAAGACCGTCATCGCCGCCTCAACCTCCTCCGGCTCCCTCCACTTCCTGTTCTCCGATCCCGCCGA CGCCACGCTGGAATCGGAGGTTTCGGTGGCCGAGGGGAAGCTTCACTCGGTGCCTAAGTCTTGTGTTGATTTGATGGATG GTGGGGTGGAGTGTGTGACGGCTGGTGAAGATGGGAGGGTGAACTTGGTGACAGTTGGGAACTCTAACTTGAATTACCGG CGGTTGTTTGATAGCGGTGGGTTGGTGTCGTACACGGCGGTGAAGTGGGCGTCGCCTACGGAGTTCGCTACCGGTGGTTA TGGGTTTGGTCTTCAATGGTGGGATCAGAGGAAGCCGGGTGGACCGGTTTCTCAGTTTAAGGGTAACTGGGATAAAAAAT TGACTGCTGGAATTGTACACTCTATTGACATTCATCCATCAAGGAAGCACACTTGCCTGGCTGGTGGCTCCTTAGGCACT GTTTTTGCGTGGGATCTTAGGTGGCAACAACAACCGATTGTACTTGCGGGATCAGCAGCAGGGGCTGGGGCTGTGGACAC TACAGTGCAGTCAATATCTGAAAGTGAGGTTTGGGAGGTGCAGTATGATCGCTGCATTAAATCAAACGCTTCATCTACCC GGATCTTACCTGCCATGATCTGTTCAGAGGATGGAATTCTTGCTGTGGCTGAGCAAGGTGAGGAACCTATTGAGCTGCTG GCAGAACCTTGCGCCATCAATAGCTTTGATATTGATCGTCATAATCCATCGGATGTAATATGTAGTTTAGAGTGGGAAGC AGTAGCAATAGTGACAAGGTAA
Protein sequence (LotjaGi4g1v0291200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVTANSETSRIHRFPQYKYIDAVRWLPLVSAFDRFAVLASFDFDSDASSIEIHSFKPNPLSFEPQSSWTPPSRVSSLKA AQFLQKTVIAASTSSGSLHFLFSDPADATLESEVSVAEGKLHSVPKSCVDLMDGGVECVTAGEDGRVNLVTVGNSNLNYR RLFDSGGLVSYTAVKWASPTEFATGGYGFGLQWWDQRKPGGPVSQFKGNWDKKLTAGIVHSIDIHPSRKHTCLAGGSLGT VFAWDLRWQQQPIVLAGSAAGAGAVDTTVQSISESEVWEVQYDRCIKSNASSTRILPAMICSEDGILAVAEQGEEPIELL AEPCAINSFDIDRHNPSDVICSLEWEAVAIVTR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 353 | 345 | 4.4E-120 | – | |
| Gene3D | 18 | 353 | 336 | 6.0E-26 | ||
| SUPERFAMILY | 46 | 258 | 213 | 4.03E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0291200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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