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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0341900 |
| Transcript ID | LotjaGi4g1v0341900.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein phosphatase 2C-like protein; TAIR: AT3G16560.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q9LUS8|P2C40_ARATH Probable protein phosphatase 2C 40; TrEMBL-Plants: tr|A0A0B2P5Q8|A0A0B2P5Q8_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0341900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72161555..72163913) extracted from Lotus japonicus Gifu genome v1.2.
TTGACAGTATTGTGATTGAATTTCTTGATACAGGAAATTAACATGCTTAGTCCTGAAGGAGAACTTAAAATAAGTTTTGG CTACAAATGTAATAGTTATGGAGGTATTCCTTGTAAGACCACCAATGGCTACGAAACCCTTCCTGAAGTTCGTAGGACAA GTAGTTTCTCTTGTTTGTCAGGCGCAGCCTTAAGTGCAAATGCCACACTAGCCAACACAAACATCTGCAATGGTAAGATA GGAGGGGAAATCCTTCCAAGTTGGGACTCACCAAATTCCTTTCGTAAAGTACCCTCTTCGCCAAGTCTTTCAAAGTTGGA CAGATTATCATCTTCCCTCCCAAGTAATCTATCTTACCTAAGCTGCAGTCCTTCTACTCCAAGTGATATCCTTGAATATG ACTCTTGCACATTAAAATCCATGAGTGATACTCCTAGAAGTGAAGGATTTCTTAATGCTGGTGAACTTCAAGTCGCAGGA GGAGCAGCTGGCGAAGATAGAGTTCAAGCAGTTTGCTCTGAAGAAAATGGTTGGCTCTTTTGTGCAATTTATGATGGCTT TAATGGGAGAGATGCGGCTGACTTTCTTGCCGGTACCCTGTACGACACCATCATATCTTACTTGAATAAGTCAATTTTGG GATTGGAGCCGGGTTCCATTGAAACTTCTAACAATGTGGATTTGGGTGAATCCCTCCTGAATAAGTTGGATGGTAGTCTT ATTTTTCAGGAGGATCAATCTCTGTCGACATTTACGGGGAGAAATGATTCTAATCATGGTTTTGCAAAGGATAGTCTATC TACTAAGTCTGGAGCATCATGTGAGTCATCTTCAAACGGGGTACTTGATAGCCTCCAAAGCGCACTTAGTCAGGCTGAAA ATGATTTCTTGTACATGGTTGAGCAGGAAATGGAGGAACGTCCAGATTTAGTTTCTATTGGATCGTGTGTTCTGCTTTTG CTTCTTCATGGTAATGATTTGTACACACTTAATCTAGGTGATAGCAGAGCAGTATTGGCTACATGTGGTGCAGGTGACAC AATAAATAACCGTGATAGACTCCAAGCTATACAGCTTACTGACAGTCATAATGTTGATAACGAAGCTGAAAGAGCAACAC TTCTTGGTGATCATCCTGATGATCCGAGGGTCATTGTAGGGGGAAAAGTGAAAGGTAAACTGAAGGTTACTCGTGCATTC GGGGTTGGCTACTTGAAAAAGGTTGGTATTCTCTCTTACATTTTGGGGAGCATTTGGATAAATAACTTAATTAAGATCTT ATGTCAATAAGCATTTATCGCATAAGCGCTAATTCATAAGTTAATTAGAGAATTATTTTTGTAATAAGATCAACATAGGT TATAGGTAGGTGTATAAACGCTTATTCATTAGCTAATCTGAGTAGTTTATGAAAATAAGCTCAAAACAATTTATATATAG GTCATAAGCTATTTACATAAGCTCTCCTTGACATTTGCATAAGCGCTTATGCTATAAGATAAGCTCATCCAAACAAGACC CGAGTGAATGGGGTGCAAAGAATTAATCTTTGTCCTACCAAAGAGATTTATTTTCTTATTTTCCCCCATGCAGAAGAATC TGAATGATGCTTTGATGGGAATCCTTCGAGTTCGCGATCTTAAGAGCCCGCCATATGTTTCCACTCAACCATCAGTGAAT GTCCGAAAAATCTCAAATTGTGATCAATTTGTTATACTAGGGAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAGGC AGTAAAGCTAGTGGAGTCTTATATCTTGAGCAATCCTTTTGGTGATCCTGCAAAGTTTCTCATAGAGCAGCTTGTAGTTA GAGCAGCTGATTCTGCAGGTCAGGTTCTAGGTCTTATGCTAAATTAGTTTTATTTGCATGAATATAGCTTTTTATAGACT ATATAGACACATTGGTCCTTAAAAGATACGACATCAGCCAACTTAATCCCCGAAAGATGGAAGTTGGCAAAATAGTCTCT GTAAGATGAAAACAGATCAATTTAATTCTTGAAAGACGAAAATTGTGGTCAATCTGGTCTTTGAAAATTAATAAGGTGAT TCATTTTAGTCCCTGGGAGAACTAAATTGAATTTTTTCTTCATCTTTCAGTGTAGTTTTGAGCTAAACTGGCCGACCTGA AATTTTTCCGGGACCAAAGTGACTATTCAGTCGGTTTTTATATGTTGTGTTATTAAGTAAAGCTCTTGCAGGTTTCAGCA TGGAAGAGTTGATGAATGTTCCGGCAGGGAGGAGAAGAAAGTACCATGACGATGTGACGGTAAGTGTGATCATGCTTGGG ATGAATCAGCGGACTTCAAAGGCTTCAACTTGCATCTAG
CDS sequence (LotjaGi4g1v0341900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTAGTCCTGAAGGAGAACTTAAAATAAGTTTTGGCTACAAATGTAATAGTTATGGAGGTATTCCTTGTAAGACCAC CAATGGCTACGAAACCCTTCCTGAAGTTCGTAGGACAAGTAGTTTCTCTTGTTTGTCAGGCGCAGCCTTAAGTGCAAATG CCACACTAGCCAACACAAACATCTGCAATGGTAAGATAGGAGGGGAAATCCTTCCAAGTTGGGACTCACCAAATTCCTTT CGTAAAGTACCCTCTTCGCCAAGTCTTTCAAAGTTGGACAGATTATCATCTTCCCTCCCAAGTAATCTATCTTACCTAAG CTGCAGTCCTTCTACTCCAAGTGATATCCTTGAATATGACTCTTGCACATTAAAATCCATGAGTGATACTCCTAGAAGTG AAGGATTTCTTAATGCTGGTGAACTTCAAGTCGCAGGAGGAGCAGCTGGCGAAGATAGAGTTCAAGCAGTTTGCTCTGAA GAAAATGGTTGGCTCTTTTGTGCAATTTATGATGGCTTTAATGGGAGAGATGCGGCTGACTTTCTTGCCGGTACCCTGTA CGACACCATCATATCTTACTTGAATAAGTCAATTTTGGGATTGGAGCCGGGTTCCATTGAAACTTCTAACAATGTGGATT TGGGTGAATCCCTCCTGAATAAGTTGGATGGTAGTCTTATTTTTCAGGAGGATCAATCTCTTTCAAACGGGGTACTTGAT AGCCTCCAAAGCGCACTTAGTCAGGCTGAAAATGATTTCTTGTACATGGTTGAGCAGGAAATGGAGGAACGTCCAGATTT AGTTTCTATTGGATCGTGTGTTCTGCTTTTGCTTCTTCATGGTAATGATTTGTACACACTTAATCTAGGTGATAGCAGAG CAGTATTGGCTACATGTGGTGCAGGTGACACAATAAATAACCGTGATAGACTCCAAGCTATACAGCTTACTGACAGTCAT AATGTTGATAACGAAGCTGAAAGAGCAACACTTCTTGGTGATCATCCTGATGATCCGAGGGTCATTGTAGGGGGAAAAGT GAAAGGTAAACTGAAGGTTACTCGTGCATTCGGGGTTGGCTACTTGAAAAAGAAGAATCTGAATGATGCTTTGATGGGAA TCCTTCGAGTTCGCGATCTTAAGAGCCCGCCATATGTTTCCACTCAACCATCAGTGAATGTCCGAAAAATCTCAAATTGT GATCAATTTGTTATACTAGGGAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAGGCAGTAAAGCTAGTGGAGTCTTA TATCTTGAGCAATCCTTTTGGTGATCCTGCAAAGTTTCTCATAGAGCAGCTTGTAGTTAGAGCAGCTGATTCTGCAGGTT TCAGCATGGAAGAGTTGATGAATGTTCCGGCAGGGAGGAGAAGAAAGTACCATGACGATGTGACGGTAAGTGTGATCATG CTTGGGATGAATCAGCGGACTTCAAAGGCTTCAACTTGCATCTAG
Protein sequence (LotjaGi4g1v0341900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSPEGELKISFGYKCNSYGGIPCKTTNGYETLPEVRRTSSFSCLSGAALSANATLANTNICNGKIGGEILPSWDSPNSF RKVPSSPSLSKLDRLSSSLPSNLSYLSCSPSTPSDILEYDSCTLKSMSDTPRSEGFLNAGELQVAGGAAGEDRVQAVCSE ENGWLFCAIYDGFNGRDAADFLAGTLYDTIISYLNKSILGLEPGSIETSNNVDLGESLLNKLDGSLIFQEDQSLSNGVLD SLQSALSQAENDFLYMVEQEMEERPDLVSIGSCVLLLLLHGNDLYTLNLGDSRAVLATCGAGDTINNRDRLQAIQLTDSH NVDNEAERATLLGDHPDDPRVIVGGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRDLKSPPYVSTQPSVNVRKISNC DQFVILGSDGLFDFFSNDEAVKLVESYILSNPFGDPAKFLIEQLVVRAADSAGFSMEELMNVPAGRRRKYHDDVTVSVIM LGMNQRTSKASTCI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 29 | 491 | 463 | 2.5E-168 | – | |
| PANTHER | 29 | 491 | 463 | 2.5E-168 | ||
| Gene3D | 116 | 490 | 375 | 1.2E-76 | ||
| SMART | 127 | 479 | 353 | 3.7E-45 | ||
| ProSiteProfiles | 136 | 481 | 346 | 36.158 | ||
| CDD | 149 | 479 | 331 | 6.6443E-45 | ||
| SUPERFAMILY | 150 | 482 | 333 | 2.35E-45 | ||
| Pfam | 164 | 435 | 272 | 6.8E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. |
Expression pattern of LotjaGi4g1v0341900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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