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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR015655
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 272 results. Now displaying 1 of 6 with 50 rows per page. This search has taken 5.664s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0060199.1
n.a. PREDICTED: probable protein phosphatase 2C 5-like [Glycine max] gi|356535037|ref|XP_003536055.1| chr0 20021022 20022117 +
2 domain predictions
2 GO terms
Lj0g3v0060329.1
n.a. PREDICTED: probable protein phosphatase 2C 73-like [Glycine max] gi|356576817|ref|XP_003556526.1| chr0 20077041 20079346 -
2 domain predictions
2 GO terms
Lj0g3v0086639.1
n.a. PREDICTED: probable protein phosphatase 2C 25-like [Glycine max] gi|356569519|ref|XP_003552947.1| chr0 34995953 34998021 -
2 domain predictions
2 GO terms
Lj0g3v0099919.1
n.a. PREDICTED: probable protein phosphatase 2C 74-like [Glycine max] gi|356514577|ref|XP_003525982.1| chr0 42397858 42399023 +
2 domain predictions
2 GO terms
Lj0g3v0100519.1
n.a. PREDICTED: probable protein phosphatase 2C 65-like [Cicer arietinum] gi|502104349|ref|XP_004492511.1| chr0 42488526 42490479 -
2 domain predictions
2 GO terms
Lj0g3v0100529.1
n.a. PREDICTED: probable protein phosphatase 2C 65-like [Glycine max] gi|356566738|ref|XP_003551586.1| chr0 42490595 42491455 -
2 domain predictions
2 GO terms
Lj0g3v0114849.1
n.a. PREDICTED: probable protein phosphatase 2C 5-like [Glycine max] gi|356535037|ref|XP_003536055.1| chr0 50401455 50404714 -
2 domain predictions
2 GO terms
Lj0g3v0114849.2
n.a. PREDICTED: probable protein phosphatase 2C 5-like [Glycine max] gi|356576823|ref|XP_003556529.1| chr0 50401455 50403227 -
2 domain predictions
2 GO terms
Lj0g3v0123379.1
n.a. PREDICTED: probable protein phosphatase 2C 76-like isoform X1 [Cicer arietinum] gi|502136263|ref|XP_004502624.1| chr0 55348290 55354582 -
2 domain predictions
2 GO terms
Lj0g3v0181509.1
n.a. protein phosphatase 2C-like [Arabidopsis thaliana] gi|9757995|dbj|BAB08417.1| chr0 88579504 88579657 +
2 domain predictions
2 GO terms
Lj0g3v0209759.1
n.a. PREDICTED: protein phosphatase 2C 16-like [Glycine max] gi|356563938|ref|XP_003550214.1| chr0 105234861 105236957 -
2 domain predictions
2 GO terms
Lj0g3v0209759.2
n.a. PREDICTED: protein phosphatase 2C 16-like isoform X1 [Cicer arietinum] gi|502125207|ref|XP_004498842.1| chr0 105234861 105236979 -
2 domain predictions
2 GO terms
Lj0g3v0230559.1
n.a. PREDICTED: protein kinase and PP2C-like domain-containing protein-like [Glycine max] gi|356500335|ref|XP_003518988.1| chr0 119448027 119449001 +
2 domain predictions
2 GO terms
Lj0g3v0254659.1
n.a. PREDICTED: protein phosphatase 2C 16-like isoform X1 [Cicer arietinum] gi|502125207|ref|XP_004498842.1| chr0 132222770 132224893 +
2 domain predictions
2 GO terms
Lj0g3v0286019.1
n.a. PREDICTED: protein phosphatase 2C 37-like [Cicer arietinum] gi|502137755|ref|XP_004503174.1| chr0 148543842 148545799 -
2 domain predictions
2 GO terms
Lj0g3v0292169.1
n.a. PREDICTED: probable protein phosphatase 2C 25-like [Cucumis sativus] gi|449455017|ref|XP_004145250.1| chr0 151646573 151647510 +
2 domain predictions
2 GO terms
Lj0g3v0293749.1
n.a. PREDICTED: probable protein phosphatase 2C 58-like [Glycine max] gi|356542975|ref|XP_003539939.1| chr0 152560375 152564881 +
2 domain predictions
2 GO terms
Lj0g3v0302609.1
n.a. PREDICTED: probable protein phosphatase 2C 60-like isoform X1 [Cicer arietinum] gi|502106250|ref|XP_004492898.1| chr0 157427994 157437583 +
2 domain predictions
2 GO terms
Lj0g3v0306689.1
n.a. PREDICTED: probable protein phosphatase 2C 10-like [Glycine max] gi|356508095|ref|XP_003522796.1| chr0 160050257 160053128 -
2 domain predictions
2 GO terms
Lj0g3v0306689.2
n.a. PREDICTED: probable protein phosphatase 2C 10-like [Glycine max] gi|356515790|ref|XP_003526581.1| chr0 160050257 160053128 -
2 domain predictions
2 GO terms
Lj0g3v0315719.1
n.a. PREDICTED: probable protein phosphatase 2C 52-like [Glycine max] gi|356517540|ref|XP_003527445.1| chr0 164791521 164796512 -
2 domain predictions
2 GO terms
Lj0g3v0341549.1
n.a. PREDICTED: probable protein phosphatase 2C 39-like [Cicer arietinum] gi|502088118|ref|XP_004488738.1| chr0 179003173 179006276 -
2 domain predictions
2 GO terms
Lj0g3v0342679.1
n.a. n.a. chr0 179658974 179663302 -
2 domain predictions
2 GO terms
Lj0g3v0342679.2
n.a. PREDICTED: probable protein phosphatase 2C 15-like [Fragaria vesca subsp]. vesca] gi|470126122|ref|XP_004299042.1| chr0 179659196 179663302 -
2 domain predictions
2 GO terms
Lj0g3v0351549.1
n.a. PREDICTED: protein phosphatase 2C 37-like [Cicer arietinum] gi|502097062|ref|XP_004490902.1| chr0 184850052 184851837 +
2 domain predictions
2 GO terms
Lj1g3v0052630.1
n.a. kinase-associated protein phosphatase [Lotus japonicus] gi|169409938|gb|ACA57835.1| chr1 600045 606408 +
2 domain predictions
2 GO terms
Lj1g3v0052640.1
n.a. kinase-associated protein phosphatase [Lotus japonicus] gi|169409938|gb|ACA57835.1| chr1 600249 606636 +
2 domain predictions
2 GO terms
Lj1g3v0715590.1
n.a. PREDICTED: probable protein phosphatase 2C 60-like [Glycine max] gi|356502653|ref|XP_003520132.1| chr1 9406230 9414488 +
2 domain predictions
2 GO terms
Lj1g3v0948720.1
n.a. nodule-enhanced protein phosphatase type 2C [Lotus japonicus] gi|4336434|gb|AAD17804.1| chr1 11986701 11989386 -
2 domain predictions
2 GO terms
Lj1g3v0948730.1
n.a. n.a. chr1 11986705 11990139 -
2 domain predictions
2 GO terms
Lj1g3v0987690.1
n.a. PREDICTED: protein phosphatase 2C 57-like [Glycine max] gi|356516081|ref|XP_003526725.1| chr1 12630695 12635200 +
2 domain predictions
2 GO terms
Lj1g3v1649040.1
n.a. PREDICTED: probable protein phosphatase 2C 12-like [Glycine max] gi|356519208|ref|XP_003528265.1| chr1 19717518 19722319 +
2 domain predictions
2 GO terms
Lj1g3v1787570.1
n.a. PREDICTED: protein phosphatase 2C 16-like [Glycine max] gi|356514681|ref|XP_003526032.1| chr1 21189412 21193392 +
2 domain predictions
2 GO terms
Lj1g3v1810050.1
n.a. PREDICTED: probable protein phosphatase 2C 59-like [Glycine max] gi|356507156|ref|XP_003522336.1| chr1 21862726 21866841 -
2 domain predictions
2 GO terms
Lj1g3v1812220.1
n.a. PREDICTED: probable protein phosphatase 2C 60-like [Glycine max] gi|356514901|ref|XP_003526140.1| chr1 21946070 21951675 +
2 domain predictions
2 GO terms
Lj1g3v2394320.1
n.a. PREDICTED: probable protein phosphatase 2C 65-like [Glycine max] gi|356530218|ref|XP_003533680.1| chr1 28242710 28246042 -
2 domain predictions
2 GO terms
Lj1g3v2837010.1
n.a. PREDICTED: probable protein phosphatase 2C 33-like [Glycine max] gi|356568499|ref|XP_003552448.1| chr1 32222945 32226578 +
2 domain predictions
2 GO terms
Lj1g3v3150040.1
n.a. PREDICTED: probable protein phosphatase 2C 33-like [Cicer arietinum] gi|502102339|ref|XP_004492043.1| chr1 35880943 35886839 -
2 domain predictions
2 GO terms
Lj1g3v3150040.3
n.a. PREDICTED: probable protein phosphatase 2C 33-like [Glycine max] gi|356568909|ref|XP_003552650.1| chr1 35881650 35885963 -
2 domain predictions
2 GO terms
Lj1g3v3150040.4
n.a. PREDICTED: probable protein phosphatase 2C 33-like [Cicer arietinum] gi|502102339|ref|XP_004492043.1| chr1 35882706 35886055 -
2 domain predictions
2 GO terms
Lj1g3v3458530.1
n.a. PREDICTED: probable protein phosphatase 2C 4-like [Glycine max] gi|356523147|ref|XP_003530203.1| chr1 40082143 40085070 +
2 domain predictions
2 GO terms
Lj1g3v4578770.1
n.a. PREDICTED: probable protein phosphatase 2C 38-like isoform X1 [Cicer arietinum] gi|502110964|ref|XP_004493923.1| chr1 54296406 54299650 +
2 domain predictions
2 GO terms
Lj1g3v4765180.1
n.a. PREDICTED: probable protein phosphatase 2C 73-like [Glycine max] gi|356572950|ref|XP_003554628.1| chr1 57494938 57498795 +
2 domain predictions
2 GO terms
Lj1g3v4765200.1
n.a. PREDICTED: probable protein phosphatase 2C 5-like [Glycine max] gi|356572946|ref|XP_003554626.1| chr1 57504025 57506865 -
2 domain predictions
2 GO terms
Lj1g3v4820000.1
n.a. PREDICTED: protein phosphatase 2C 32-like [Glycine max] gi|356572864|ref|XP_003554585.1| chr1 58185191 58191093 -
2 domain predictions
2 GO terms
Lj2g3v1589630.1
n.a. PREDICTED: probable protein phosphatase 2C 47-like [Glycine max] gi|356495303|ref|XP_003516518.1| chr2 25275890 25279922 +
2 domain predictions
2 GO terms
Lj2g3v1589640.1
n.a. n.a. chr2 25275890 25280395 -
2 domain predictions
2 GO terms
Lj2g3v1932950.1
n.a. PREDICTED: probable protein phosphatase 2C 63-like [Glycine max] gi|356540647|ref|XP_003538798.1| chr2 28456173 28458741 -
2 domain predictions
2 GO terms
Lj2g3v2292680.1
n.a. Protein phosphatase 2C [Medicago truncatula] gi|357490877|ref|XP_003615726.1| chr2 33364133 33366255 +
2 domain predictions
2 GO terms
Lj3g3v0420600.1
n.a. PREDICTED: protein phosphatase 2C 16-like [Glycine max] gi|356514681|ref|XP_003526032.1| chr3 3605755 3610205 -
2 domain predictions
2 GO terms