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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0357600 |
| Transcript ID | LotjaGi4g1v0357600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein; TAIR: AT1G14710.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q94407|NHR48_CAEEL Nuclear hormone receptor family member nhr-48; TrEMBL-Plants: tr|K7KQ45|K7KQ45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0357600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73621498..73627887) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAACCCACGTTTTCTTCCCGAATATTCGCTCCAAAATCCGAAATGAGCAGAGTCCCAAGTCCCAGATGAAAACACAT ACATACAGCAATGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGTTGTGTGTTGTGTGTCGTGACTTGTGAATGTGAGC CACCATTTATGACCATACATACCATGGTTTACATAGGCATACCACATGCGTGCTGAATAAGCCATTCTTCCTTAACCCTA GCTTAGCTAACTACTACATTACATTAGATCCTGTCTTCCTCTTCAACCCTTTGCTTTGCGTCACTCCAACTCAACCACAT CTTCACTTTCCATAATCTCATACATCATTCACCACTTACCCTTTTCATTGCCAGATCTCTCCAATTCTCAACTTTTCACC CATCTGATCACTTTTTTTCACAAAACCCATCTCAAATTCTCCATTTTTAGCTCCAGATCATTCTTGGGTATCCTTGTTTC CGACCAAGTTTGTTTCTTTTCTGCTTAATTCTTCTAAATTTTGCATTTTTTTAAGTGGGGTCCTCTTCAATTTTGCTGTT TTCTTCTGGTAATCTCGTTGTTTCTTTGTTTAGATCTAGTTCTGTAACTGGGGTATGCTTGCTTTGTATGCGGTTCTAGT CTTGTAGTGTATTGTTGGCAGTGACTAGTGAGTTCTCATGGCAATGCCATCAGGGAATGTGGTAGTGCAGGACAAAATGC AGTTTCCTAGTGGTGGTGGTGCTGGCAGTGGTGCTGGTAGTGAGATCCACCCGCACCACTACCGACAGCAGTGGTTTGTT GATGAGAGGGATGGGCTTATTGGTTGGCTGCGAAGCGAATTCGCAGCTGCCAATGCGATCATAGATTCCCTTTGTCATCA TATGCGTGTGGTTGGTGACCCTGGGGAGTATGATGCTGTCATTGGGGCCATTCAGCAAAGGCGGTGTAATTGGAATCAGG TGCTGCTCATGCAGCAATACTTTTCTGTGGCTGAAGTGGTGTATGCGCTGCAGCAAGTGGCATGGAGGAAGCCGCAGAGG TATCTGGAACCAGTGAAAGTGGGTGCAAAGGATGTTAGGAAATCTGGTCCTGGATACCGGCAAGGGCAGAGGTTTGAGGC TCCAAAGCAAGCTTATAATTCTAGTACTGTGGAGTCTTATGGTCAGGAAGGGAATACTGTGGTTACTGGCGGTGCGGAGA AAGGGACTCCTGTAGCTGAGAAGACTGAACAACTTAATTCCGGGGGCGAGGTTGGGAAGATGGATGATAAGGGTTTAGCA ACTGCTGAGGAAAAGAAAGGTAAATACTCAATCAATCAATCAGCCTGTTTGTATTATAATACTACACATTGAATCTAGCA CCTCTGAGTGATTGTTGTTATTACATCTTTTTGTGTTCATTTTAATCCAAATGGTATTTGCAATGCTGGGTAGGTACCTT TCTTCCTTGAAACTTTTATAGTATGGACTTAAAAGATTGAAATTCTGGCGCACTCAGGATAATTGATTGACTCAGCCTTG CTTTATACTAAATGTATAATGTATAATTTGAGGGCACCATTGTGATTTAGAAATAAGCAGTTTTATTCTCTTTGGCTTCT TATGGTGCTTGCTTTTGGCCTTTTGGATAGAGCCATACTGGTATGCTGAAATAATGGATATATCGACAGTGTTTTGTTGG GATTGATACCAACTATTTATATGAAAATCAGCGGAGATAATCAGATCATTTTATGGATATCTTAGCATCTGATAAAGTAA GAATGCCGACTTGAATATGACGAAAGTATGAATCTATTATTTACAAGTCATTACTTTTTGGGATATGATATCATGCTCCT TTTCACAATGAAAGCTATTCATGAAAGACTCCAATTAATTCAGACTAAAAATTAAAATGGTTGACCTTCAATGTTAAAAT TAAGGCCTCTTTTTTTGTATGATAATTTGGCTCCTGCTATTTAATTAATGGTAAGGTGGGGGGGGGGGGTTAGCTCACAT ATGATTGACACACTACAAATGCCTACAGAGTACAGTCTAATGACTTGTTTGCTCTCCTGCTTGCTTGAGCAGATGCTCTA ACAAAGCATCCAACTGATAGCAACTTGAAGAGCTCAGGGAGTTCTGAAGAATCTCTGTCCAACTCAGAATCTGAAGCTGC AGTTGCAACAGTTGTAAATGATGGACGTGTGTCAAATTCTAAAGGTTTCTTCCTGTGCACCGTGATTTAAGTGATGATGT ATATCTTATTTAACTTAGGGCAGTTGGCTATGCTAGTTGTGTGCATGAAGTTAGTAAATATTGTCATACTTTACACTGCC CCCCCCCCCCCCCCTCCTCTTGTTTTTATCACATGCTTGCATTTACTTATAAATTTGTGTGCCAAATAAAAAAATGTTAG GTCCTCACACTAGACCATAAACACATAGTCACACTCACATCTCATGTATGATCAGGGTCGGTTATAAAATGCTGTATCAG CTTTTCGTTCATTATTTATTTACCATTTAATTTTAAAGTTACCTCTTTTGCAATGTGTTTTCAGAGAATGATTCCCATTC TATGCAAAATCAAAATCAGAGCCCAAGTCTTTCAACTATGGCAAAAACGTTTATTGGCAATGAGATGTTTGATGGGAAGA TGGTAGGGTCCTTTAAATATTTATTCACTTTTTTCTTGATGTCAATGTTCTAGATGTGTATATACCTTGTAATTTTTCCT ATTTCTTCTATCTTTTATATTTTACATTTATGATGTACCTTTTTTATTTTTCATTTTTAGGTGAATGCGATTGATGGACT GAAGTTGTATGAAGGTTTAATTGATGGAACTGAAGTTTCAAAACTTGTTTCATTGGTTAATGATCTAAGGGTCAGCGGAA AAAAAGGACAATTGCGAGGTAACTGTATTATCTGTGTTATATACCTTCATGCTGGAAGATTCTTTCACTGCTTCCCTTTT TAAATTCACTTGGTTGATAGCAAATAGCTGTGGCCATATGCATGGCTGGTCCACTGCACATGCTCTTAAAGCCAGAGGTT TCTTTGGAAAAAGGCTGTTGACTTGCGTCTATTTTTCTCTCTTTTTTCTCCATTTTATTAGTTGAATAGTCACGGATGAA GAACCAGGTGGCACTGTTTCTCAGTGACTAAAAACTGTAGAGTAGTACATGAGTCATGAGTTCTTATATAAGTTTGGTCA TGGTAAGTTGTACTTATTGTTTTTGTACTTGTGATATTTGCCAAGTTGCGCAAGAATTTTGGTCTTGATCTTGTTATTTG TTTGGTTTATACTTCTGTTTTTTCCCCTATTGACCGTCACCACTCACCAGTCACCACCACTAGTGTAATGTTCGTAATGA TAAAGTTATGGTAGAGCTGTTAGAACACATTAGAATACACGACGCTGGGCAACAAGTTTCATAAATGAGTAGTGACAAAT GCGAAGAGAGAGAGAGAGAGACAAAGAAAGATAAAAAATTATGCATACGACCCTATTTACTGTTTATTGGTCGATGCTCA ATTTGATTGCAGGGCACGTGTAATACACACACACACACACACACACACATCTATATATATTTATATGGATGTTCAGTCTG ACTGTAATATTTTATATCACCCTGCTGGAAAATAATTTATGCTTTGTTGTCTGGATTATGCAAACAACTTTTTTGATAAA TACTTCTTGCTAAATATTTTTTACAAACAGGAAGTCAGACATACATAGTTTCGAAAAGGCCCATGAAAGGGCATGGAAGG GAGATGATTCAGTTAGGTGTTCCCATTGCTGATACACCTCCAGATGGGGAAAATATGACAGGAGCCTCCAAAGGCATGTT GTTTGATTTCTTTCTATACCAATTTACTGTACTTTTCACATCTTTCTTATTTCCAGCCATGATATTTGACTTTTTCCACC CCTGTAGTAATAATGATTGTTTAAGTTCCATAAATTGAATCTGGCAGAGATGAATGTAGAATCTATTCCTTCCTTCTTTC AAGATATTATTGAGCGTATGGTTTCCTCACAAGTTATGACTGTGAAGCCTGATGCTTGCATTGTGGATTTCTATAATGAG GTTGATTCTTGTATTATTCTTATTTTTTGTGAGGTTTTATATTGGCATAATTGGCTAAGTTAGTCTGGTTATTGCAATTG ATTATAGGGCGATCACTCACATCCCTACAATTGGCCACATTGGTATGGAAGGCCTGTCTATATCCTTTCCCTGACAGAAT GTGATATGACTTTTGGAAGAGTAATTTCCTCAGACCATCCAGGGGATTACAGGGGCTCTCTGAAGCTTTCTCTTCTCCCT GGGTAATGCTTGCAGATCTTATCTTTTACTGTTATAATGCATCTCATATATGTGTGTTAATATTATGATGCTGTCTTTGG TTTGTAGAAGCCATAAAATCATGAGATTTCAATCAAGACCTGTCTATACTAAAAAATTAATAGAAGTCTAGTTGATGGTT AGACATAGTTTAGTCCATTATATGTTCTTCATGTTACCTGCATATTCATGGATACCTTTATGAATTTTGGTTTTTTTTCT TCCGTTCAAAATGAAAATATAGTGTATATCAACATCTTAGTTTTTGCATACACTGATTGGAAGCCTTTTTAACTGTTACT TATTATTCCAAGGAGCCCTCTTTATTGAATGAGCTTTTGTGGGTCTTTTAAGTTTTGGATCATTCATTTTCGTTGATTAG TCTCAGATTGACTAGAGATATGGTCAAATAAGTTAAGTCCTTATAAAGGGTATAGCAACCCTCACCTCAAAAGCTAGCTT TTGGGGTAGAGTTAGGCCTAACCCGAATTCTAATATGATATAGGGCCTATCCTAGTATCCTAGATCCGTTTATTGGGCTA CCATATATGGACTACTCGCATATGTTCATTCCTGTAAATTCCACGCTCCAAATGTCCCGCCCTGTGTGTGATGAGAAGAC CAAACAAGTCCTCATAAAGGGTAGAGCAACCCTCACCTCAGAGCTAGCTTTTGGGATAGAGTTAAGCCTAACCTGAATGA TAAGAATTCTGTTCATGGAGATGATTATTATTCAAAATAACTTCTATAGGGCATTCTGTCTTTTATTATTTATTATTATC TTAGCAAGTTTAGTCTCTTGCAGTATTATAGTGTGTTGTGTAGAGTTCACTATGCTAGGGGAGGGGAGTGCTGCTTGTTT TGATGTCTTACTTCAATCTGAAATTCCTCTACCCTTTGTTCAGATTCTAAATACTTTTATGCTTTGGCTGCTGTAGGTCT CTTCTGTCTATGCAAGGGAAATCTACTAATTTTGCTAGATATGCTATTCCTTCTATCCGCAAACAACGCATACTTGTTAT TTTTACAAAGTCCCAACCAAAGAAGTCACTGTCAAGTGATGCTCAACGTTTTACCTCATCAGCAGCATCTTCTCATTGGG GTCCACCGCCAAGCCGTTCCCCCAATCACGTTCGTCATCATTTAGGCCACAAGCATTATGCTTCAGCTCCAACAAACGGA GGACTGCCAGCTCCACCAATCCGGCCACAAATTCCTGCTCCAAATGGTATGCAGCCATTGTTCGTACCCGCACCAGTTGT GCCTCCGATGCCATTCCCTGCACCTGTGCCAATCCCACCGGGTTCTGCAGGCTGGACCACAGCTCCTCCAAGGCACCCCC CTCCTCGGATCCTTGCTCCTGGCACAGGAGTCTTCCTACCTCCGCCCGGCTCAGGTAATTCATCTCAACCGTTACCAGGT ACTTTGGCTGAAGTGAACCACCAAACTGTGGAAACTCCAACCTTACAGGAAAAGGAAAATGGGAAGGCTAATCACATTGT TTCCCCAAAAGGGAAAAGGCAAGAATGCAATGGACATGGGGTCGATGGAACTCAAGTTGAACAAGGTGTAGGGACACTAA AGGATAGTGATGAGAAAGCTGCAGCAAGTCATTGAGCCTGTGCCAGGTGATGATATAGTTATAGAGAGGGAGAGAAAGAG AGCTAAAGCTTATCAAAGGAAAAAGGGTAGGCTGCGATGTTAACTTGAGTTTGAAGCAAATGTAAAGCGCGGCATGTCAC ATATACTCTGCAAAGGAGAGCAAGGGAAGTAGGCAGAACGTTTTGGTTCTGTTCAAAATCCTTTCTTTGCTCCAGTCCTT TTTTTGTTATCTTACTATATTAACTATTACAGTAAAGGAAACCCATTCTTATCATAATTTTTGCTTTTTTTTTATCTTAT TATTATGATTATAAAATGCTTCTTACTGTGGATCATGATAATTTCATGTAGAAATTTCATGATATTTTCATGCTGTGTCT GTGTCTCTCATCATGTGTTAAATGGGTGGGATGCTGTTAATATTGATCTTGTGGTAATGTGTCATCTGTG
CDS sequence (LotjaGi4g1v0357600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGCCATCAGGGAATGTGGTAGTGCAGGACAAAATGCAGTTTCCTAGTGGTGGTGGTGCTGGCAGTGGTGCTGG TAGTGAGATCCACCCGCACCACTACCGACAGCAGTGGTTTGTTGATGAGAGGGATGGGCTTATTGGTTGGCTGCGAAGCG AATTCGCAGCTGCCAATGCGATCATAGATTCCCTTTGTCATCATATGCGTGTGGTTGGTGACCCTGGGGAGTATGATGCT GTCATTGGGGCCATTCAGCAAAGGCGGTGTAATTGGAATCAGGTGCTGCTCATGCAGCAATACTTTTCTGTGGCTGAAGT GGTGTATGCGCTGCAGCAAGTGGCATGGAGGAAGCCGCAGAGGTATCTGGAACCAGTGAAAGTGGGTGCAAAGGATGTTA GGAAATCTGGTCCTGGATACCGGCAAGGGCAGAGGTTTGAGGCTCCAAAGCAAGCTTATAATTCTAGTACTGTGGAGTCT TATGGTCAGGAAGGGAATACTGTGGTTACTGGCGGTGCGGAGAAAGGGACTCCTGTAGCTGAGAAGACTGAACAACTTAA TTCCGGGGGCGAGGTTGGGAAGATGGATGATAAGGGTTTAGCAACTGCTGAGGAAAAGAAAGATGCTCTAACAAAGCATC CAACTGATAGCAACTTGAAGAGCTCAGGGAGTTCTGAAGAATCTCTGTCCAACTCAGAATCTGAAGCTGCAGTTGCAACA GTTGTAAATGATGGACGTGTGTCAAATTCTAAAGAGAATGATTCCCATTCTATGCAAAATCAAAATCAGAGCCCAAGTCT TTCAACTATGGCAAAAACGTTTATTGGCAATGAGATGTTTGATGGGAAGATGGTGAATGCGATTGATGGACTGAAGTTGT ATGAAGGTTTAATTGATGGAACTGAAGTTTCAAAACTTGTTTCATTGGTTAATGATCTAAGGGTCAGCGGAAAAAAAGGA CAATTGCGAGGAAGTCAGACATACATAGTTTCGAAAAGGCCCATGAAAGGGCATGGAAGGGAGATGATTCAGTTAGGTGT TCCCATTGCTGATACACCTCCAGATGGGGAAAATATGACAGGAGCCTCCAAAGAGATGAATGTAGAATCTATTCCTTCCT TCTTTCAAGATATTATTGAGCGTATGGTTTCCTCACAAGTTATGACTGTGAAGCCTGATGCTTGCATTGTGGATTTCTAT AATGAGGGCGATCACTCACATCCCTACAATTGGCCACATTGGTATGGAAGGCCTGTCTATATCCTTTCCCTGACAGAATG TGATATGACTTTTGGAAGAGTAATTTCCTCAGACCATCCAGGGGATTACAGGGGCTCTCTGAAGCTTTCTCTTCTCCCTG GGTCTCTTCTGTCTATGCAAGGGAAATCTACTAATTTTGCTAGATATGCTATTCCTTCTATCCGCAAACAACGCATACTT GTTATTTTTACAAAGTCCCAACCAAAGAAGTCACTGTCAAGTGATGCTCAACGTTTTACCTCATCAGCAGCATCTTCTCA TTGGGGTCCACCGCCAAGCCGTTCCCCCAATCACGTTCGTCATCATTTAGGCCACAAGCATTATGCTTCAGCTCCAACAA ACGGAGGACTGCCAGCTCCACCAATCCGGCCACAAATTCCTGCTCCAAATGGTATGCAGCCATTGTTCGTACCCGCACCA GTTGTGCCTCCGATGCCATTCCCTGCACCTGTGCCAATCCCACCGGGTTCTGCAGGCTGGACCACAGCTCCTCCAAGGCA CCCCCCTCCTCGGATCCTTGCTCCTGGCACAGGAGTCTTCCTACCTCCGCCCGGCTCAGGTAATTCATCTCAACCGTTAC CAGGTACTTTGGCTGAAGTGAACCACCAAACTGTGGAAACTCCAACCTTACAGGAAAAGGAAAATGGGAAGGCTAATCAC ATTGTTTCCCCAAAAGGGAAAAGGCAAGAATGCAATGGACATGGGGTCGATGGAACTCAAGTTGAACAAGGTGTAGGGAC ACTAAAGGATAGTGATGAGAAAGCTGCAGCAAGTCATTGA
Protein sequence (LotjaGi4g1v0357600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMPSGNVVVQDKMQFPSGGGAGSGAGSEIHPHHYRQQWFVDERDGLIGWLRSEFAAANAIIDSLCHHMRVVGDPGEYDA VIGAIQQRRCNWNQVLLMQQYFSVAEVVYALQQVAWRKPQRYLEPVKVGAKDVRKSGPGYRQGQRFEAPKQAYNSSTVES YGQEGNTVVTGGAEKGTPVAEKTEQLNSGGEVGKMDDKGLATAEEKKDALTKHPTDSNLKSSGSSEESLSNSESEAAVAT VVNDGRVSNSKENDSHSMQNQNQSPSLSTMAKTFIGNEMFDGKMVNAIDGLKLYEGLIDGTEVSKLVSLVNDLRVSGKKG QLRGSQTYIVSKRPMKGHGREMIQLGVPIADTPPDGENMTGASKEMNVESIPSFFQDIIERMVSSQVMTVKPDACIVDFY NEGDHSHPYNWPHWYGRPVYILSLTECDMTFGRVISSDHPGDYRGSLKLSLLPGSLLSMQGKSTNFARYAIPSIRKQRIL VIFTKSQPKKSLSSDAQRFTSSAASSHWGPPPSRSPNHVRHHLGHKHYASAPTNGGLPAPPIRPQIPAPNGMQPLFVPAP VVPPMPFPAPVPIPPGSAGWTTAPPRHPPPRILAPGTGVFLPPPGSGNSSQPLPGTLAEVNHQTVETPTLQEKENGKANH IVSPKGKRQECNGHGVDGTQVEQGVGTLKDSDEKAAASH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 664 | 661 | 3.4E-274 | – | |
| PANTHER | 4 | 664 | 661 | 3.4E-274 | – | |
| MobiDBLite | 133 | 267 | 135 | - | – | |
| MobiDBLite | 148 | 167 | 20 | - | – | |
| MobiDBLite | 197 | 214 | 18 | - | – | |
| MobiDBLite | 215 | 267 | 53 | - | – | |
| Gene3D | 275 | 492 | 218 | 4.0E-50 | ||
| SUPERFAMILY | 281 | 479 | 199 | 4.53E-11 | – | |
| MobiDBLite | 491 | 512 | 22 | - | – | |
| MobiDBLite | 491 | 520 | 30 | - | – | |
| MobiDBLite | 633 | 679 | 47 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0357600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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