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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0363000 |
| Transcript ID | LotjaGi4g1v0363000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT1G25270.1 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|Q4PT23|WTR6_ARATH WAT1-related protein At1g25270; TrEMBL-Plants: tr|I3SMA9|I3SMA9_LOTJA WAT1-related protein; Found in the gene: LotjaGi4g1v0363000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74195776..74198876) extracted from Lotus japonicus Gifu genome v1.2.
TAGCTTCTCTCTCACTCTCTCTAGCTATTTCCTTTAATAATCTCAAAACTCCCTTGTAGCTAACACCATGATGAGCGGGG AATCCAATTTATACAAAGGACTGAAACCAGTGATACTAATGGTGTTTGTGCAGGTTGCATATGCTGCAGTGAATATCATC TACAAGCTCGCCATAAAGGATGGAATGAACATGCCGGTGGCTAATGCCTACCGCCTCATTTTTGCATCGGCTGTCACTAT CCCTCTTGCTTTTATCTTTGATAGGTTGATGATGACTCCATGCATTTTTTTATTGCTTTTACACTCACTAGTCACTACTC ACTAATCGGACTATAGTTTGGGAAATATTTAATTTTCATGCATGAACCTTATATGAAAACGTTAAGTTAGATTATTATAT TCTTGGAGAGTGTGGTTATAGTGAAGTGAACTATACATGAGATTATCTTCAATATTCCCTTTTAATTTCTCTCAATTTTG CACACTGAGTGTAGTTCTCCTAAGATAAGTCAATTACTTAAATTCAAATAGATTAAAAAAAACAAAAAGAGAAAGAGAGA AAGAACGAATGTGAAAGTGGAAATAATATAAGAATGTAAATGCATCATAGCTCCTATATAAGTGATATATCAATCGGATA ACTGTCAAAATTGTATTTTTGCACTGTACACATAACATTTTCGTTAATACATGCATATAATTAATTTTTTTTATAAGCAC ATGCATATATATAATTAATAATTGTTTGCTGTATCCTATATATAGGAAGAGAAATATTCTACAGCTTCTGAATATGAGAT TCACGAGAGGAAAATGGTTTTTCCCTTTTTTTTTCTCAATACAGGAAGAAGAGGCCAAAAATTACATGGAGGGTACTTTT TTTGGCATTTCTTTGTGGATTGTTTGGGTATGCTACGTAAATTATTGACTTTACCTCCATGAGTATATGGTATCCATGTT AAGGTTTTTTTTTATAAACAAAGAAATATATTGAATGAAGTATAAGGGGTACTTCAACACAATATAAAGAAGAATAGTGA GAAAGAAGAAAAATAATTATAAGGTAATGAATTACAAATACTCATATATATGGTACAGTTATGTAATGTTTCTATTTCAG GGGAAGTTTATTTCTAAACCTTTATGCCGTGGGTCTGGCTTTGACGTCAGCAACGTTTATGTTGGCCATGGTCAACCTTA TTATAGGCATTACCTTCATCATGGCTACAACCTTCCGGTATGTACACTTATCTTGCAATTTTAGGAAGGTTACCTTCTTC ATATATGATATGAAAGATATTAATTGTATGGTTTTGATTTTTTTTAACTTAAAAAGAGAAATACGGTGTAATTTAGGAAA GTTAATAATTTCTTTTATAAATTTATTGTTAGTAACTATTTTTTTTTAATCATAGAAAATTAGATAAAAGTAACTTAAGA CGAGATAATTAATGATAAAAGACCGGGTTAGCACTCACCGCACATTAGGTCAATATTAAATGATAGTGGTTTACCCTCTC AACTTATAATGCTTTTAATTAATTATAAATAAAACTCACATTAATCAGTGTCCATTTTGTTGTATATGCGTTTGATTTTC TGTAGATTGGAAAAATTAAATTTCGGAGTACCAGAAGGGAAGGCAAAGGTGATAGGAACATGCGTTGGAATTAGTGGGGC AATGCTCATGACCTTTCTCAAAGGGGTGGAAATTAATATTTTTCCTTCCCAAATTAACCTTTTGCATCCACATCGGGACC AAAATAAGCATATGGGGCAACATCATGTAGACTTTAGTAATAAACTACTTGGGGTTCCAAGTGCCATTGCAAGTTGCTGC TCTTTTTCTTTGTGGTTAATCATTCAGGTTAACTGATTTTTTTTTTTTCACTATAGTCATTTCATATATCAATATTTTTT ATGTGAATGAGTTGTTTGAGTTGTGTTCGCTTCTATTGTCATCTATGGGCACAGGCTCAAGTGAACAAAGAATTCCCCAG CCATCACTCAAGCTCAGCGTTGATGTGCACAATGGGAGCGATACAATCCATTGTTGTTGCTCTTTGTTTTGAAAGGGATT GGAATCAATGGAAGTTGGGTTACGATATCAGACTTCTAACTGTGGCTTATTCGGTATGGTTTATTTTGACACTACGTACA AGTTTTTGAGATGTGAGCAAATTCTCAAGTAAATAAATTAATAAAAAAAAGCACTGTATAGGTTCAAGCATATGAAAACT CACGAATTATATTTGTACCAGCAATTTGATGGTATTGAACACAAGGATAGAAAAATAATGGGCAAGTAATGTTGATTTTG TGGCATAGTTATATTTTGTTGATTTTTTAAAATTCTATATTATGTTAGTAATACAATCCATGTACCTGATTCTGGAGTTT AATGGTCTCTCTCATTGTAACATATATATAGGCTATAGCATCACTCTTTGTTTAAATGAGTAATTTTCATGCAGGGAATT GTGGCCTCTGGTTTGGTAGTCATTATGATTTCCTATTGCGTAAAGATGAGAGGGCCTCTATTTGCATCTATTTTCAATCC TCTACAACTTTTACTTGTCGCTATCGCTGCTTATTTGTTGTTGGATGAGAAGTTATATCTAGGAAGGTATAGTCTATATA AATCTTTCTTCATGTTCATGGTTTGATATACTATATATGATGATTTAGTATGGTTTTAATTAATTATGCAGTGTTCTTGG AGCTGGGCTGATCGTGTGTGGCCTATACACTGTGCTTTGGGGTAAGAGCAAAGAAATGAAAAAGAAGACTCAGTTAATTC CATTGGAAAACACCAAACAGCCCGAAGTTACTGAGATTGCTGTTATGTCTATGACCATAGATCATGATAAATGGGTCCAT AGCAATCAAAATCAAACTAGTGCAACCTGGAATGTTGCTAATGATCAATAACTATTTGTCGAAAATAAAAAAAATGGAAC ACGTCACTACTGAAATATGTCGCAACCAAGGTCGCGAAGATGTAACTTTTTTTAATGAAAACAGTGGAGTCACTTTAAAT AGGAAACATTTGAAAATGTGATAAGAATATGAGATCTGTGACACTAAATTTGGGTTATGGA
CDS sequence (LotjaGi4g1v0363000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGCGGGGAATCCAATTTATACAAAGGACTGAAACCAGTGATACTAATGGTGTTTGTGCAGGTTGCATATGCTGC AGTGAATATCATCTACAAGCTCGCCATAAAGGATGGAATGAACATGCCGGTGGCTAATGCCTACCGCCTCATTTTTGCAT CGGCTGTCACTATCCCTCTTGCTTTTATCTTTGATAGGAAGAAGAGGCCAAAAATTACATGGAGGGTACTTTTTTTGGCA TTTCTTTGTGGATTGTTTGGGGGAAGTTTATTTCTAAACCTTTATGCCGTGGGTCTGGCTTTGACGTCAGCAACGTTTAT GTTGGCCATGGTCAACCTTATTATAGGCATTACCTTCATCATGGCTACAACCTTCCGATTGGAAAAATTAAATTTCGGAG TACCAGAAGGGAAGGCAAAGGTGATAGGAACATGCGTTGGAATTAGTGGGGCAATGCTCATGACCTTTCTCAAAGGGGTG GAAATTAATATTTTTCCTTCCCAAATTAACCTTTTGCATCCACATCGGGACCAAAATAAGCATATGGGGCAACATCATGT AGACTTTAGTAATAAACTACTTGGGGTTCCAAGTGCCATTGCAAGTTGCTGCTCTTTTTCTTTGTGGTTAATCATTCAGG CTCAAGTGAACAAAGAATTCCCCAGCCATCACTCAAGCTCAGCGTTGATGTGCACAATGGGAGCGATACAATCCATTGTT GTTGCTCTTTGTTTTGAAAGGGATTGGAATCAATGGAAGTTGGGTTACGATATCAGACTTCTAACTGTGGCTTATTCGGG AATTGTGGCCTCTGGTTTGGTAGTCATTATGATTTCCTATTGCGTAAAGATGAGAGGGCCTCTATTTGCATCTATTTTCA ATCCTCTACAACTTTTACTTGTCGCTATCGCTGCTTATTTGTTGTTGGATGAGAAGTTATATCTAGGAAGTGTTCTTGGA GCTGGGCTGATCGTGTGTGGCCTATACACTGTGCTTTGGGGTAAGAGCAAAGAAATGAAAAAGAAGACTCAGTTAATTCC ATTGGAAAACACCAAACAGCCCGAAGTTACTGAGATTGCTGTTATGTCTATGACCATAGATCATGATAAATGGGTCCATA GCAATCAAAATCAAACTAGTGCAACCTGGAATGTTGCTAATGATCAATAA
Protein sequence (LotjaGi4g1v0363000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSGESNLYKGLKPVILMVFVQVAYAAVNIIYKLAIKDGMNMPVANAYRLIFASAVTIPLAFIFDRKKRPKITWRVLFLA FLCGLFGGSLFLNLYAVGLALTSATFMLAMVNLIIGITFIMATTFRLEKLNFGVPEGKAKVIGTCVGISGAMLMTFLKGV EINIFPSQINLLHPHRDQNKHMGQHHVDFSNKLLGVPSAIASCCSFSLWLIIQAQVNKEFPSHHSSSALMCTMGAIQSIV VALCFERDWNQWKLGYDIRLLTVAYSGIVASGLVVIMISYCVKMRGPLFASIFNPLQLLLVAIAAYLLLDEKLYLGSVLG AGLIVCGLYTVLWGKSKEMKKKTQLIPLENTKQPEVTEIAVMSMTIDHDKWVHSNQNQTSATWNVANDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 9 | 355 | 347 | 1.0E-186 | ||
| PANTHER | 9 | 355 | 347 | 1.0E-186 | – | |
| Phobius | 12 | 35 | 24 | - | – | |
| Pfam | 13 | 155 | 143 | 3.5E-11 | ||
| TMHMM | 15 | 32 | 18 | - | – | |
| Phobius | 36 | 46 | 11 | - | – | |
| TMHMM | 45 | 64 | 20 | - | – | |
| Phobius | 47 | 64 | 18 | - | – | |
| SUPERFAMILY | 48 | 156 | 109 | 4.05E-5 | – | |
| Phobius | 65 | 75 | 11 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 76 | 98 | 23 | - | – | |
| Phobius | 99 | 103 | 5 | - | – | |
| TMHMM | 103 | 125 | 23 | - | – | |
| Phobius | 104 | 127 | 24 | - | – | |
| Phobius | 128 | 138 | 11 | - | – | |
| Phobius | 139 | 157 | 19 | - | – | |
| Phobius | 158 | 192 | 35 | - | – | |
| TMHMM | 193 | 212 | 20 | - | – | |
| Phobius | 193 | 212 | 20 | - | – | |
| Pfam | 194 | 332 | 139 | 1.8E-13 | ||
| Phobius | 213 | 223 | 11 | - | – | |
| Phobius | 224 | 243 | 20 | - | – | |
| TMHMM | 225 | 245 | 21 | - | – | |
| Phobius | 244 | 262 | 19 | - | – | |
| SUPERFAMILY | 251 | 337 | 87 | 5.36E-12 | – | |
| TMHMM | 260 | 282 | 23 | - | – | |
| Phobius | 263 | 282 | 20 | - | – | |
| Phobius | 283 | 288 | 6 | - | – | |
| TMHMM | 287 | 309 | 23 | - | – | |
| Phobius | 289 | 308 | 20 | - | – | |
| Phobius | 309 | 313 | 5 | - | – | |
| Phobius | 314 | 334 | 21 | - | – | |
| TMHMM | 314 | 333 | 20 | - | – | |
| Phobius | 335 | 389 | 55 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0363000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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