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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0376000 |
| Transcript ID | LotjaGi4g1v0376000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF616 protein; TAIR: AT4G38500.1 Sept9 (DUF616); Swiss-Prot: sp|D1ZMX7|LCL2_SORMK Long chronological lifespan protein 2; TrEMBL-Plants: tr|A0A072TTY8|A0A072TTY8_MEDTR Plant/F20M13-60 protein; Found in the gene: LotjaGi4g1v0376000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75485768..75489845) extracted from Lotus japonicus Gifu genome v1.2.
AATGATAAGTTGAAGGAAGAATCAAATATGGAGGTTGATCTTCAAAAGTCTCTTTCTTCGCGCCTAAATCGAAGAGGAGA CCGAAGTAATCAAAATCCACAAGCTAAAGGTCAGGAAGGGCTGTTATCAAGTATATTTTTTTTCTAAATGTGGGTGAAGT CATTAGTTAGATTGTCTTTGGTGGATAAGCCAAGTTTGTTTGTTGGTAATGCAGATTTTGAAATGGGCTTCTTTTCCTCA GGGAGGGTACCCCAAGATTACCCCATGAAGATTGTTTGGAAGAAAGGGTTTATTCGATTGATTCTTGTAATAGGGATCTT GTGGATGTTACTAATTCTTATTGCATTGTTGTTCCATATATGGTCTTGTCAATCTTCTGTTTCCTTTTTATCAGGTTAGT AATCTTTTAATACATTTGGTTACTTCTTGGGAGTCTTCTTAAGTTCTTCTCTTGTCTGTAACCCTTCTGATTGTCATAAC ATAGACTTTTTCATTTCTGTCTATTTTTAATATGATGATAATTTGGAACTAGGTAAACGGGAATGAATAACATCATTTTA TATTTTAGCTTTGAGCTTTATAGCTACACTATGCCTGCAAAATTTAATGATGCCTGGTATTAGAAAATCATCAGTCATAG GAAGTTTCTTGCCTTACATAAACACTGGCCTTTGAAAAGAACAGTTTGGAGATTCATTTCTCTCTCTCTCTCTCTAATCT ATTAGTTGTAAAAAAAAGCATATTTATCTAGTAGTACGCTAGTACTAACTGTGTAGTAGGTTGCTTACCAAATTTATATT TGAGGATAAGAATTCTAGAATGCATCCTGGTAGTGAATTGAATTTAATGCAACTCATTCTTGTTATTTTTCCTTTCACGT GATGGTTAAGAGGGCTTTCGTCAAGGGAAATAGGACTGCGCACTTGTCTTATATTTTATAATTTTATATATAGCTCTTTG TGACTAACATTAGAAGCGAAAATACCTAGAATTTGATTGATGGGTTTAGATTCAAACTTGCTATGACCTATGAGTAGGAA TACAGGATAATCACTTGGTTGGAGGTTCTGTTAGGTTATTAAAAGGCATGCTTCAAGGAAAGATTGTTCAACATAGGCAT TCTTTCTTTATCAATTATTTTCTTCTCCAAAATTACAATATTATGTCATCATTTCTGAAAATTCAGCAATTTTCTACTTG ACCTGCAGCTATGTGTAATAAAGATAGCAAGGTTTATACCATGTTAGACACTATGGGACTTGTATCAAAACCTCACAGTA AGATTTTGGCAGTTTTTCATCCATCCATTCTTTTTAGACTTAGCCAAATAATAACTAATGATTGATATCGATGCTACCTG TATTCATTAGGGTGTCCAATTCCTCTTTCCAATGACCCTGATAAGATAGTTATCCCAACTGGAAGAACTCCTGACAATGA TGTCAAAAAATTATTGTATGTTATGGAAGATGAGGTTCCACATAATGGTTCTCAGTCATCTCCTCTGTTTGGAGGCCATC AAAGTTGGAAACAGAGGGAGCAGAGTTTCGAACTAAAATCAAATATGAAGGTAACCATAATTTGATTCAGTCCATTTTAA TTGCAATTGCTTCACAGTTTTGTAAGATTATGTTGTTGTTGCCACCATAAATATGTCATGGTTCCCATTCACTTCATCCC TCAGGTGCACTGTGGATTTATCCAAGGTGGTGGTGCTGACATGGATCCTTTAGACATCAAATATGTTAAGAAGTGCAAAT TTGTCGTGGCATCTGGTATTTTTGATGGCTATGACATCCCTCATCAACCATCAAATATAAGCGATCGCTCAAAGAAGCTT TTTTGCTTTCTTATGGTGGTGGATGAAGTATCTTTAAAATTCATGAGGGAAAATAGTACTGTCAAAGAAGACAATGCTGG TGGAAAATGGGTGGGAATTTGGCGACTTGTGCTTCTTAAGAATCAACCTTATGATGAACCAAGAAGGAACGGGAAGGTTC CTAAAATTTTGACCCACAGGTTATTCCCTCAAGCACAGTATAGTATATGGATTGATGGTAAAATGGAGTTGATCGTGGAT CCATTGCTTATCCTTGAGAGGTACTGTATCCGTTGTCATAGTGTATGCCTAGGCTTTGTGATAATATGGACTTTTCAATC TGATTCTCTTGATAGTTATTTAAACTGCTATCTTTTTGTTTCTTGTTAGAAGGATAAGAGAAAAAAGCATTTGGTTTTGA ATTTGATATTACCGACGCTTGATAGTTTCCACCACCTGTCTAGGGTTGGGCCTCACCTAGTAAAGGCTTGGATGATGTTT GTTTTGAATTTGATGACATATCTCATGCTCTTACCAGTTAATTACACAATAACCATTCGTAGGCTCATCGATTTGAAGGG TTCAATCTTGAATTTTTTGTGTTCCTGTTTGTCTTGTATATAGGCTTAGAGATTTATAATCACGAAGTTGGTGCATTATA GAAGCAAAATATATGTTTGCTTGGAATTTTCTTGTAATGTGTGTTAATGGATTTCCCAAGTCACCTCTTGTGATTAGTTT GACACTAACACTCCCCCTCCTTCCTCCCAAACAAATAAAAAATGTTATTTGAAACTGTTAATATTGATGTTTTATACCAG AACAAATATTTTTCCCCAGGGTTACTTCCCTTGTGTTTATTTGCATTTGACACTTAGATCCTTGTAGGATAACAACATAT GTAGTTTTGTTGGAGAGCATCAGTTCATATAATTATACATTGCACAAGAAATCCTAGTTTCCAAAATATAAAGCAGGATA ACTTTGAAAAAGCGTTTATATTTCAACCAACAGGAAAAACTACAGTGAAACCATTGGCATAATCTCTTCCGTTAAAGTTT CATCATCAGAGCTTACTGCATCTGCATTGATGTATAATCTGCCAACCATTTCTATGCGCCTTTTTGTTTCTCATGTCATG TGATATAGGATTTTACATTTTGAAAACACTCAACACCACAAGGGGTCCAAGCCCCAAAGTAATAAAGGCACTTGTTACAC CTTATATGAACAGTTAGAATCTTGATGTTGGATATTGTGATGACTGTAACTTTGTAAGGTTATCTTTACTATGCAGATAC CTGTGGCGAGGGAAGCATTCATTTGCCATTGCTCAACATAAGCATCACCGCAGTATATATGAGGAGGCTGATGCAAACAA GAGGAGAAAGCGATATGCACGGCCCCTTATTGATCTACATATGAAAATCTACTATTATGAGGGAATGAAGCCATGGAGTT TAGATAAAAAGACTGTTAGTGGTAAGACAGGAATCGAGAGTTCCTGGTTTTGTATTTTATGTTGACTGTTTGATTTCAAC AATTTTGGGATTATATTCTAACTTCTAAGGGGAAATCTGTGGAATTTTTACACCTGAGCCATGGTTAGTCTGCCAAAAAT CAAAATAACCATAGAAAGTAAGCCTTTGGACTTAAATCTCAAAATTTGGGTTCCTGTCAATAAATGACCTGTTTGGTTCA AATGAAAGGTCACACAGAAAATACCATGCGAATATGAGCTTATCTATTTCTCTGTTGACTTCAGTTGATATGTATGGTGT GCCAATGTCAATGCTTTATGTAGGCTTCAACTAGTGAACTGCATGTCAAGTACTTGTATTTGTGCACAGTAATGTTATAT TTGTTATAATAATTTATGATTTTTCAGATGTCCCAGAGGGAGCCATTATCATTCGCGAACATACTTCCATCAACAACTTG TTTAGTTGCTTGTGGTTCAATGAGGTTCACCTCTTCACTCCCAGAGATCAACTGAGCTTCGGCTATGTCGCGTACAGATT AGGCGATGCCTTCAAATTCTTCATGTTTCCAAACTGTGAATACAATTCAATTTTTGTGTTGCACCCTCACACAAGAGAGC ACTCTTCTCCCATTGAATGGGTTAAAGAGTTGGATCAACTTAAGAAGCATAGCAATTTAAAAGAAAGTAGGGGAGGATTA GGCTTGTTTACCCCTTATCCAGGGGATCTTGATTCAGTTGTTCTGCCAAATGTAACAAGAACATCAAAAGCTGGCTGA
CDS sequence (LotjaGi4g1v0376000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTGATCTTCAAAAGTCTCTTTCTTCGCGCCTAAATCGAAGAGGAGACCGAAGTAATCAAAATCCACAAGCTAA AGATTTTGAAATGGGCTTCTTTTCCTCAGGGAGGGTACCCCAAGATTACCCCATGAAGATTGTTTGGAAGAAAGGGTTTA TTCGATTGATTCTTGTAATAGGGATCTTGTGGATGTTACTAATTCTTATTGCATTGTTGTTCCATATATGGTCTTGTCAA TCTTCTGTTTCCTTTTTATCAGCTATGTGTAATAAAGATAGCAAGGTTTATACCATGTTAGACACTATGGGACTTGTATC AAAACCTCACAGGTGTCCAATTCCTCTTTCCAATGACCCTGATAAGATAGTTATCCCAACTGGAAGAACTCCTGACAATG ATGTCAAAAAATTATTGTATGTTATGGAAGATGAGGTTCCACATAATGGTTCTCAGTCATCTCCTCTGTTTGGAGGCCAT CAAAGTTGGAAACAGAGGGAGCAGAGTTTCGAACTAAAATCAAATATGAAGGTGCACTGTGGATTTATCCAAGGTGGTGG TGCTGACATGGATCCTTTAGACATCAAATATGTTAAGAAGTGCAAATTTGTCGTGGCATCTGGTATTTTTGATGGCTATG ACATCCCTCATCAACCATCAAATATAAGCGATCGCTCAAAGAAGCTTTTTTGCTTTCTTATGGTGGTGGATGAAGTATCT TTAAAATTCATGAGGGAAAATAGTACTGTCAAAGAAGACAATGCTGGTGGAAAATGGGTGGGAATTTGGCGACTTGTGCT TCTTAAGAATCAACCTTATGATGAACCAAGAAGGAACGGGAAGGTTCCTAAAATTTTGACCCACAGGTTATTCCCTCAAG CACAGTATAGTATATGGATTGATGGTAAAATGGAGTTGATCGTGGATCCATTGCTTATCCTTGAGAGATACCTGTGGCGA GGGAAGCATTCATTTGCCATTGCTCAACATAAGCATCACCGCAGTATATATGAGGAGGCTGATGCAAACAAGAGGAGAAA GCGATATGCACGGCCCCTTATTGATCTACATATGAAAATCTACTATTATGAGGGAATGAAGCCATGGAGTTTAGATAAAA AGACTGTTAGTGATGTCCCAGAGGGAGCCATTATCATTCGCGAACATACTTCCATCAACAACTTGTTTAGTTGCTTGTGG TTCAATGAGGTTCACCTCTTCACTCCCAGAGATCAACTGAGCTTCGGCTATGTCGCGTACAGATTAGGCGATGCCTTCAA ATTCTTCATGTTTCCAAACTGTGAATACAATTCAATTTTTGTGTTGCACCCTCACACAAGAGAGCACTCTTCTCCCATTG AATGGGTTAAAGAGTTGGATCAACTTAAGAAGCATAGCAATTTAAAAGAAAGTAGGGGAGGATTAGGCTTGTTTACCCCT TATCCAGGGGATCTTGATTCAGTTGTTCTGCCAAATGTAACAAGAACATCAAAAGCTGGCTGA
Protein sequence (LotjaGi4g1v0376000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVDLQKSLSSRLNRRGDRSNQNPQAKDFEMGFFSSGRVPQDYPMKIVWKKGFIRLILVIGILWMLLILIALLFHIWSCQ SSVSFLSAMCNKDSKVYTMLDTMGLVSKPHRCPIPLSNDPDKIVIPTGRTPDNDVKKLLYVMEDEVPHNGSQSSPLFGGH QSWKQREQSFELKSNMKVHCGFIQGGGADMDPLDIKYVKKCKFVVASGIFDGYDIPHQPSNISDRSKKLFCFLMVVDEVS LKFMRENSTVKEDNAGGKWVGIWRLVLLKNQPYDEPRRNGKVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWR GKHSFAIAQHKHHRSIYEEADANKRRKRYARPLIDLHMKIYYYEGMKPWSLDKKTVSDVPEGAIIIREHTSINNLFSCLW FNEVHLFTPRDQLSFGYVAYRLGDAFKFFMFPNCEYNSIFVLHPHTREHSSPIEWVKELDQLKKHSNLKESRGGLGLFTP YPGDLDSVVLPNVTRTSKAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 500 | 500 | 4.9E-282 | – | |
| PANTHER | 1 | 500 | 500 | 4.9E-282 | – | |
| MobiDBLite | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 52 | 52 | - | – | |
| Phobius | 53 | 77 | 25 | - | – | |
| TMHMM | 56 | 78 | 23 | - | – | |
| Phobius | 78 | 500 | 423 | - | – | |
| Pfam | 138 | 445 | 308 | 4.9E-134 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0376000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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