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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0395700 |
| Transcript ID | LotjaGi4g1v0395700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Spermatogenesis-associated protein 24; TAIR: AT5G65250.1 transmembrane protein; Swiss-Prot: sp|A2BGD5|CACO1_DANRE Calcium-binding and coiled-coil domain-containing protein 1; TrEMBL-Plants: tr|I1K4H8|I1K4H8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0395700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77379850..77388676) extracted from Lotus japonicus Gifu genome v1.2.
TTCAAAACCTTCTTCTCATCAATGCATATGAACCATCGTCAAAACCGTAGCATGATATCGATTCTCCGATCACCGTTGCT TCCACCCAATTCACAAGCTCCCTACATAACACGCTAACACTTTCAATTTTCAACGTTACAATGTTACTCACTTTCACTTC TCACCACCCTTTCGTTCCACATTCACTCTTCACCACAAACAGAATCTGCAACAACCTCTCCCTCTCCATCATCCCCTTAC CCCCTCTGCATCTCAACAACACCGTCAAATACTCCACACCGCCGCACAGGTTCAGCTCCTTCACGACCCATGCCGACTCC CTCCGCCGCCGATCCGAACCTTCCGTCGCCGGCGATTCCAGTTTTGACTCATTTCTCTCTTTACTCGAACTCACGTGCCT GCTATCTTCGGTTGTTGTGTCGGCAGGTGTTGCGGTGATTGCGGCATGGAAGAAGGAGCTATTGGCGGTTATTGGAAGCA GAGCTTCTGTTTGGGGTGTTTTGATGTTGGCGGTTGGGGTTCTCACTGGGGCGGTGATTCGGAGGCGGCAGTGGAGGGAG ACGGTTGTGACGGGCGGGTTTGCTGGGTCGGAGGTGAATTTGCTTCAGAGGATTGGGAAATTGGAGGAGGATTTGAGAAG CTCAACGAATGTTGTTAGGGTTCTGTCGAGGCAGCTTGAGAAATTGGGGATTAGGTTTCGGGTCACTCGTCAGTCTTTGA AGGACCCCATAGCTGAGGTAATTACTGCAAAACTAGTATTGTTTTATGATTTCACAATTCATGTGTGGAATATAGCTGTT GACTGAATTTAAGAGTTTGTAGGAGGAAATTAGAGTAGCTTTTAGAATAGCAAATGGAGAAGGTCATGTAGGATAAGAAG TTAGAACCTGTTTGGTTTCATTCACAGAACAATATCAGAACGATAGGATAAGACGTTTGAACCTGTTTAGCTCTTTCAAT CTGTAAGCAAATTGTATCAAACTGTTCAATATGGAAGTGAATTGCACATTGCCTATTTTAACTTCTGTTGGGAATTCATT CAGAATGAGAGTGGCTAGGATTGAATTTCTATCCTTTTTTTTTATATACGCTTTGGTACCATGTTAAACATCACGTTTCT CGAAAGCTTAAGTTGTTGGCTAGGTGTCTGTGACTGTGTTTATATATCCACCTTTCATCGCTTTCATCTCCTCCTTCTTC ACCATTATTTTCTAATTTCTATCTCATTGGAATCCAGCTCTGGATCTTCAGTATCCCTTTGCTTCTTACTTTGCCTTGGT TTCAGATATTTATAGTTGCTTCTCTAACACCAACTGGTCTTGCTAATACCCGCTTGTCAATTCTTATTTAGTATCCCCAA AGAAGACTTCGTCTTAAAAATGTTCATCAACAAATGTTTACAATACCCTAAGCTGTTGAAAGTCATTCAACTAATTATTT TGTTAAAATTTTGATTTGATCCATTAGCATCATGTTTATAAAATCAGATACAAGTCTTTAGGGTTTTTACACGTCTGTCA TCAGTTAACTGTTAAAATTTACTACCGACTAAATTCAATAAGGCTTATGCACTGAAGGCAACTGAGTGTCTCACTGAAGG TAACTGTAGTGCAGTAGTGTCTCAACCAGGAAGAGGCCCTGAACCCTTTTAATGCCTCTCCTCACTGACTTAGGTGAGCT CTTTGGTTCCTTTAGACTATACTGATTTACGGCCACAGAGATTGTGTACAGGTCACACTACTAAGCAATGAGCATTATTT CACTTCCATGTGGCTCTGTCACAGTTGGAAAATCAACACGTTGCTTACTGAATTACTCAGAAATATCCCTGTGGCTCTTA AACTAGGGTTGAATGGCAGCAGTCCAACAAAGGTAGTTAGAATCAGAAAGAGTCGCAGTTCTGAGAGTTGAAGAGCCAAG ACCACAGAACTGAACGTTCCTGTTTTCCCGGTTAAGGGAGAGGTTATGGAAATATGTAATCGTTACCAACTCAAAGCAGG AATGCAACAATCCCACTCAGGAATACTGCCAAACAGCACCAAACAGTGGAAATGGGAGCCAAATAAGGGTTATGCCATCA GGGGTGAGAGCACAGCAGACCTGGCAGGAATAGGGCTAAAATAACAAGGCCAATCTGAGTCCAACGGCAAGAGAGAAAAC CCAGACAAGGATGTTAGAGCCAAACCATGGAAGTTTTGGTGGAGACTCAACAATCTATTTGATGTTTACAGCACGGGACA GCAAAAAACACTTAAATTTGTTAAATTTTGCACCTTGACATTTCTTAAGTAAAAATGTATTGCTAAATAGTTTTATGTTA ATTTTTTTGATATTTAAATTATTTTTAATATTTATTTGTCATACACTCATACACTAGCTGATTGCTTCTAATTGAAGTTT AATATATTGAGTCTATGTAATGTAATGAACAAAAGAATCTGATGAAAAATATATCTAATTATGTGTTCATTTCTTGAAGA CTGCAGCTCTGGCGCAGAAGAATTCTGAGGCTGCAAGAGCATTAGCAGTGCAATCAGACATTTTGGAGAAGGAGCTTGGT GAAATGCAACAGGTTTTACTAGCAATGCAGGTAATCATCCTCCTGTGTTATTTAATCCCTGCCCAACATAGGAGGAACTA TTTAGAAATAAAATGATAGGTGCTTATTAGTGGAGTTTGAAGGCAGGATTATTTACTGTCTGTTATTTTGTTCCACTCAC CTTTTTATCTTTAGCGTGCATTAGGGATGTTTTAATTTTGATCCACTGATAGTGTCACACAAACAACTGCTAAATCCTTC ACTGCAAGTGCAAAATCTTAGTACAATGATGTGCCATATTTTTTATATTTTGAATGTGAAAACTAGTGCTACGTTGATCA TGGGTCCAGTTGAAACTCATACTTTGGGCTTAAGATCTAAGTTAAAATTTTCTTGATCACCTTTCTTTCTGAAGTATCCT CAGAATATTTTGATCATATAGTTTGAGTTTCCTTGATTGTGTAGGAACAACAGCAAAAACAACTTGATCTTATTCTTGCA ATTGCGAAGGCTGGAAAGCTATGGGAAAGCAAGCGAGAAACTAGTGAGGAACACAATACGTTAGAGGTTTCTAACTCAGC GTCAGATGAGGTAAAACAGGAGGTCCGTCAAATTTGAAGCTTGGGTTAAACTGAGAGGAACATCCTAATTTTTCAGGGTG GTGTGCAAAGTATTCTTTCTTACTGCTGTGTACACTGAATCATCAATCAACACACAAAGTCATGTTACCCTGAATTTTTT CAGCACAAATAATAATCACAAGTTTTATCCAGAGTGCCTCAAAGTTTGCTGTGAGTACAGGTGAGAAGAAATTACTCAAC CCAAAATAAGATGTTTAGAATATGCTGAACTCTCTCGTTATAGATTTCAGGAACTTACTGGTGGTTAGTTGTGCTAGTGC TTTTTTTCAAGTAACTCATAATCAATTTTCTTTCTACATGCTTATGTTATCGTTATAAAGGCTCAGTATTCACACGTTTT TTTATTTCTCTTCCGTTTTTCTGTATCCAAGTCAAATGACTTAAATATACCTTGATATTGAAAATGTTTCTTGGTTAGAT TGTTGTATAGCTCAGTTACCCGAGTAAATATGCCTTAAATCCATTGAAGAAAAATAATCTGTTCGAGGCTTGAACACGAA CACATCGAACTAACCTTTATTATTTGTTTCTAATTTGTTAGTTTGTGAGCTGGTATGGTATGTATTGTAATATTATATTC TAGTAGTGTTGCATATCAGCATATATGAGGTTTGTTTTTCTCTACTTGATGTATGTGCTGTTTGACTGTCTTTGTAGCAT TAATCCAATGACTTTACACAAAAAAAGAGGATAGGGAAGCAACGATGAAGACTATAAATTATCATGAACCATAATAATAA ACCACATTATCAAAGATAAGGATTTGTACATAGCAAATCAATTTTCAAGAATATAAAAGGGTGTTCAAGTAAGAGTCCAT TCATTTTAAAGTTTAGTAGAATTAAGTTTGTGAACTTAAATTTACAATAAACCTATTTGTGTTTTAAGGTTGTGAATTAA GGTTGAACTTAAATTACAAACCTTATCTCATGTAGTCAAATTAATTATATATTTATTCTTCGTATAAAAATATTAGCTAT ATATCAATTGGTTTTCACATGTTGTGTTTCGTATAAAAATATTTTTTCTTCTAAGTCATATAGTCCATGTTTAGATACAC ATAAACGGTAGAAAGTTATGCTGAACCAAAATCATTTCCCTTAATTAATTTTTACTTATGTCGATTATGATTTTAATTTT ATTGTGATTTTGTCTGTTAGATCTCGGTCACCCCTTGTAAAAATCTTGCTCCGCCCCTATGGAGAAGGTTGCCAGAGAAG GGGGAAGGCAGTTAAATAAATTACAGTTAAAAAATATGAAAAAAAAAGTAATAGTTATAATTTAGGTGAATTTGTGGTAC CAATATTTTTTTTCGGGTGTGGTACCTCGTATAGTACTTTAAGTTATAATTTTGTTATTTTATTTAAAAAAATGGATGAT GTATTGTTGCAATTTTAAGAATTTAAGTTCAATGACTCAATGAACTAAATCACTAATAACATATTGTATTTAAGTTTGTT TATACTGTTCAATGCACGATTTGAAAAACTAGGGTTTTATGTTTAACTTTCAACTTTGAGAGATCATCTAAGATCCTTTC TTGTCAGGATCTTCTTTTTCCATGCCTCACCTATGTTGAACCTTGCAAATCTTCATCCATCATTTTATTTTAAGTTCAAA TTGTTTTATTTTTCTATTAATTTATATCATTATGGGTACCACGCCTTAATCTGGCTTAAGATACCACAGCAAGCATCTAT AATTTATTAGCACTTAGGCAAAACTGCATTAGGAAGTGTAATTTTCTGTTTTCATATTTTTTAACAGTAAAACCCATGGT TCTGTTTTTGAAATATAAACAAGTAAACAACAGTAAATTGTTTACTTATCTAGGTTTTCCCAAGGGGGTTTTTTCTAGAA AGGTTTTAACGAGGCAAATTTCTTTTATCTTTCTCCTAGGGGTAGCGGGTTTAGATTAGAAGTTGTTTGGGGGTTAATCT GCTGTATCTCTACTGCTTCTTGCTTCTGTAATTTTTTTCTTTCTATTTGTATTGGGTTGAAGTATTGGATTTCAGTCTCA GAAATCACCTTGAAGTAATTGATTATCACAATCAATGCTATGTTAGGAACAATCAATTTGTAAGAGAAGAAAGAAAGTCA AGAAAAACACATTCAGATCAGAAGAAGAATGAACAGAGGGAAAAACTTTATTAGCATTGATCGCACAATCACAGTGCATA TTACAACATTTATAGCTAATCATTAGCTAAGGACTAAAACCAGCTCAGCTCACAAACTAAAGGACTAAAACTCTAAACCT TATAAAATCTGAAGGACTAATTCTAAATTACACAATATTACAACATGAAGTACCAGGGGTACTTCTATTTAATATATTTT TCAATGGCTTATAAAAAAAAAATAAACAACAGTAAACAGTTCAGAGCAAGCATAGATTTGAAAGGTACATCATAATATAT AGACGCAAGCGTGACTGTCAGTCTTTTTGCAGTGAAAGACCTTTAATTAACTCCGATAATGGTATTTTCATCCTGTCATC AAACTTTCATTCATCAAAAGCTAATAAAGATTGACCAAAAAAATAATCAAAAGCTAATAAATTTAATTTTGGACCTCTGA GTGGAAAAAAGGGACGTACGACCGGTCATTCACAGAGTCACAATCCCTCTCACCCTCTTTGTGCAATGTCAATAATCTAA TGCCAGCTTTGACTAATTGAAAGCCGCTGCGAACTACGAAAGGAATCACTTAACCTCGAAAAGGAAACTGTGACAGGAAT AGTTACACTTGCCCTTTAAGCTTATTTGGTTTGAAATGCTTTCTTCAACTGTGCTAGATCAATTTTAGAAATTCACCACT ATGTGCACATGTTTGGCTTTACATTAAAGTAATTGTGAACACGATTTCACATCTACAACACACCTCACATATATACTCTC AATTTTTCTCTCTATCTCTCTTTTTAATACATTACATTATATATCATCTCTATATCTATTTTCTATTCTATCTTACTTTA GATGTCTGCAACATTTGGGTGTACACAAACATAATTGTGTTCTTTGGTGTCATGTTACATGTCGAAAGGTTCGTTATTAT TATGCTTATTATAATGATATCATAGGGCCACTTCCGTAGGAGTTCAATTGAATTATGAGAGGAAAGTAATAAATACTTGT CAGCAATGTCATTTTTAGTCATTCAATTCTATGAAAACGAATTCGTATTTCTTGGGAAAAATCCAAAATCGATCCACTCT TTGGAGCTAACAAGATTGTTACACCACATTCAGTTTGCCCAGCAGCCATATAAATAGTCACTGCAAAATTACATAATTAA CCGTGTTTATGGGTTAAGAGAAGTTGTTTCTATTCATCACAACCCTGATTCACCTGATTCACTGTGATTTTTCAATGTAT ACCTGAGCATGAGCATGAGCATGCACTTAGTCGAACACAGTCAAAATGATAAACCCTTGGGGAGTAGTACATGAAAAATT AGATAGCATAATAAATGCTAATTTTAACCCTCTGAGAGGAACACAAAGAAACTTGTTTTTCCACCAAAGCTACTACTAAT AATCACCAGTTCACCACAGCCTCCTCAAGAAGCTACTAATATAAAACACTGAGCAAGGGGTCCTTGATACTGATGTGGAT TCTCCCAATTTGCTTAACCCTCTTGACTCGTTCCTTTCACTTTTTTCTTCTGCAGAGTCTGCACTAGCCTGCACTGCACC CTCTCTCTCCACTTTCTCTCTCTCTCTCTCTCACTTCCTTCCAACACATCTTCCAATTTATGTACCTCTCATCTCCTCTT TCTTCAGGCTATAAGCCATGACAAGAAAAGCACTCAACACTAGAAAAAATTAAGTAAAAAGCCATCTTTCTTAGCTGTGT TGTTTCAGCACAAACACAATTCGCTACATAAAGTTTCTACAGGTCTGGCATTCGGATCTGACTTCACTTACACATTAAAT TTTGCCTCCTTCTCTTTTTGCTTCTTCTTTTAGATGGGGAAGGAATGACTTCAAGGGGTGACATGATATTCATTCATGGC TTCACTCAACTCACATCAGTGCTTCACAACCTTGTTTCTCATAATCCTGCTGAATCATCTTCCCTATCTAGTTTCAACCT CCAATCAGCCGAAGCCTGCAATTTCTCCCAGGGTAAGCTTTAATTTAAGCCATTGTTGCACCTTCCACCTTCTTGGATTA CCTTTTCTTTCATCAAAATAAAAATTACTTATAGGCTATAGCATGTTTGAATAATATCAATCCTGACACTTAAAAAAACC GTGTTTGGATTTACTTCTTTTTTATCAAAATTAATTTTAGAACTTAAAAGCTACTTACAGAATTTTCTCCTGATTTTGGC TTCAATGTCCATTATAGAATAGTTTTCAAGCACTCTCCCCAGATTCAATGCATGTTTGGATATACGATAAAAATTCAGTG AGGGCAAAATTACGGTGAACTGCCACAACAGATAAAAGATAAAAGAAGTTGCTTTTGTATAATATTGACATGTATTGAAA CATGCAGTTAATTTTATCTTTGGAATCAGTTTAGAAGATTTTTAAACATGTACTTAATTAGGTTCTTTTTTTGTCAATTT TGTGCAGGAGCTGTTATTTGAGGAGAAAAATAGGTTAGGTTCAATGCCTCCAAGCTGCCACAACAAGTGCAATGAGTGTC ATCCATGCATGGCAGTTCAAGTGCCAACCTTGCCCACCCATAACTCTGTTAATCCGCCCCCAGATCTTTCAAAAACTGCT TCCATGGAAAATTGGCCTTACCCTTCTCTTCAAGGTACAAGGTACTCCAATTACAAGCCATTAGGTTGGAAATGCCATTG TGGTGACCACTTCTTCAACCCTTAGAAAATCAAATCCTGTACAACACCCTTGTGGAGATTTTGATTCAATTTCCTCATCT TGGTCATTTTGCAAAATGGTAATTACTAGTTACCGATTACCCATCTCCTTTTTGATCTTATTTTGTTGGTTAAATTAAAT TATTACTAAATGTTTGTGTTTTTTTTGGGGTCCTTGGTAATTGCTGCTTAGGGTCATAGATATGTGTCACTTGCGTCAGC ATTGATTGTATACATTGAAGTTTGATTGATACACTTGTATAGCAGAGTTTGTTACAGCTAGACCTGAATTCCGCCTATAT GTTGAGTCTATATGTATTATTTTGAGAAAATTTTCTTTGGTGCTTTATTGTGTTTTTTGTAATCAATCTTATTGTGTTGT GCAAAGATTATGTGGTAATTTTGGTGTCAGATCTCTGAGACGGTTGTGTCTTGTTACATTGCTAGAATTGTCCTTTCTCT ACTTTCCTTTGGTTTATCTACTGTTTGGTGTGAATCTGTCTCATGACCTTTTGCTTATCTCCTCGGAATTTACATTGCTC ACATGCTGTTGTTTTTCTCTCCTTACACATGGTGGTATATCAATAATTATACCTTCACACCTCAACACACTTCAACATTT CAGGTGTGGAGAGGTGGAAGAAGAGAGATAAAAAAAAAATGAGAAAGAAAATAAAGACTTGATAGATGATTTAATTGATT AAGGAAAAAGAAATAAATAGAAAATGAATGTGGAAAAGTGATGAAGGTGTGTATATATCAAAACTCGTGCTATATGGATG CTCCTTATCCATAGCAAGAGTTTTGTA
CDS sequence (LotjaGi4g1v0395700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTACTCACTTTCACTTCTCACCACCCTTTCGTTCCACATTCACTCTTCACCACAAACAGAATCTGCAACAACCTCTC CCTCTCCATCATCCCCTTACCCCCTCTGCATCTCAACAACACCGTCAAATACTCCACACCGCCGCACAGGTTCAGCTCCT TCACGACCCATGCCGACTCCCTCCGCCGCCGATCCGAACCTTCCGTCGCCGGCGATTCCAGTTTTGACTCATTTCTCTCT TTACTCGAACTCACGTGCCTGCTATCTTCGGTTGTTGTGTCGGCAGGTGTTGCGGTGATTGCGGCATGGAAGAAGGAGCT ATTGGCGGTTATTGGAAGCAGAGCTTCTGTTTGGGGTGTTTTGATGTTGGCGGTTGGGGTTCTCACTGGGGCGGTGATTC GGAGGCGGCAGTGGAGGGAGACGGTTGTGACGGGCGGGTTTGCTGGGTCGGAGGTGAATTTGCTTCAGAGGATTGGGAAA TTGGAGGAGGATTTGAGAAGCTCAACGAATGTTGTTAGGGTTCTGTCGAGGCAGCTTGAGAAATTGGGGATTAGGTTTCG GGTCACTCGTCAGTCTTTGAAGGACCCCATAGCTGAGACTGCAGCTCTGGCGCAGAAGAATTCTGAGGCTGCAAGAGCAT TAGCAGTGCAATCAGACATTTTGGAGAAGGAGCTTGGTGAAATGCAACAGGTTTTACTAGCAATGCAGGAACAACAGCAA AAACAACTTGATCTTATTCTTGCAATTGCGAAGGCTGGAAAGCTATGGGAAAGCAAGCGAGAAACTAGTGAGGAACACAA TACGTTAGAGGTTTCTAACTCAGCGTCAGATGAGGTAAAACAGGAGGTCCGTCAAATTTGA
Protein sequence (LotjaGi4g1v0395700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLTFTSHHPFVPHSLFTTNRICNNLSLSIIPLPPLHLNNTVKYSTPPHRFSSFTTHADSLRRRSEPSVAGDSSFDSFLS LLELTCLLSSVVVSAGVAVIAAWKKELLAVIGSRASVWGVLMLAVGVLTGAVIRRRQWRETVVTGGFAGSEVNLLQRIGK LEEDLRSSTNVVRVLSRQLEKLGIRFRVTRQSLKDPIAETAALAQKNSEAARALAVQSDILEKELGEMQQVLLAMQEQQQ KQLDLILAIAKAGKLWESKRETSEEHNTLEVSNSASDEVKQEVRQI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 80 | 80 | - | – | |
| PANTHER | 33 | 285 | 253 | 1.0E-98 | – | |
| Phobius | 81 | 103 | 23 | - | – | |
| TMHMM | 81 | 103 | 23 | - | – | |
| Phobius | 104 | 114 | 11 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 115 | 133 | 19 | - | – | |
| Phobius | 134 | 286 | 153 | - | – | |
| Coils | 218 | 241 | 24 | - | – | |
| MobiDBLite | 259 | 286 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0395700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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