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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0401100 |
| Transcript ID | LotjaGi4g1v0401100.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Apoptotic chromatin condensation inducer in the nucleus; TAIR: AT4G39680.1 SAP domain-containing protein; Swiss-Prot: sp|Q9UKV3|ACINU_HUMAN Apoptotic chromatin condensation inducer in the nucleus; TrEMBL-Plants: tr|A0A0B2RHC9|A0A0B2RHC9_GLYSO Apoptotic chromatin condensation inducer in the nucleus; Found in the gene: LotjaGi4g1v0401100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77864906..77869085) extracted from Lotus japonicus Gifu genome v1.2.
AGGGTGTTTTGGGTACTGCGCTTAGATAAATTTTAACATCACTGTGACGAAGAAAAAGCAGAGCTTAATAAAAAAATCTC ATACTTCCAACTTTCATCGTTTTCTCTTGCTTTTGGACAAAAAAATCGTTGACGTTGAATATAATTTAGCGTGTGTTCGT TTTGGATTTTTGTTTTGTATTGTTTCGCTGGTTTTCAGGAATGAACGGAGTAGAGAGAGTTACATGAACGAAAACATTCG TTCTGGTTTCGTGAATCTAATCCTATCGTAGCTAGCAACAGCGTTTCTCTCACTCACTCACTCACTCACTCACCATGTGT ATGTGGATTTCTTCTCAACATTTGCTTCTCTGATACTCTTCTTCGGAAATTGAAATTAGGGTTTCAAAACCTCCTACAGT GCTTCCCATTGTGAGTAATGCCTCCACCCTCTTTCTATCAAATGCCCCTGTGATGAGTTTATTTTGATAATTATATGTTC TTACGCAATGCGTGTGTTTATGTGCAATTTTAACACTTCAATTTTTCGATTCATTAGCATGCTTAAATAATAATGCAGTT TGAATAACTAGTGCAAATGTTGTTGAGTAGACTTTAGATTGCTGATTTTTTAGTTTCCAAAACCCTTCCCATAGTTGGCT ATATGTTCTTTTGATTAATGAATTGATTGTCTTTCTCTTGTTGGTTGTGTGTGGAGTTTAATTACTGGCTTTAGGTCAGG GAAGCTGACTTGATTTGGATATAATGTCGTCACCGTATCCGATTCTCGACGATAAACCCATCGATCAGTGGAGGGTTACG GAGCTAAAAGAGGAGTTAAAGAGAAGGAAACTAACCACCAAAGGTTTAAAGGATGATTTGATCAAGCGTTTGGATCAAGC TCTTCGCCTTGAAAGGGATGGTGCTGATGGTTCTGGTTCTCAGAAGGATGAGGTTAATGGTTTGGATGGTGATATAGCTG AGCTGAACGATTCACATATGAAGACTGCAGTTGGTCTTGAAGTAGTTGATACAGCTGGAAAGGGAAGTGCAGCTGTAGTT GAACCAATGGAAAAAGAAAATGCAGGAATGAGTCCTGAGGTTGTGCATGATGACAGCAAAAAGAGTGACGATGTCGTCCC GGTTGACATTGACGGTGGTGTCTTGCGGGCGGTGGACCAAGCAGTGCGATATACGGACTTTCCAGCTGGTGTAGATTCTA CAAATGGGAGAGAGGAGCTAACTACCCACACTTCTACGACAGAGACCACCGTTACGGTCACTGAAAGTGTCTTAACAGAA GAAGTAGTCAGTGGTCAGGATTCTGTTAGTGCTGAACCACAAAGCATTCATGATCAGGATTCTGTTACAATGCAGGAGAA TGAGGAGTCCAAGGCTGGGATGGATGAAGACTCAAAGCCTCAGCTGGATTGTGACCTAAAGCCCTTGTGCGAGGATCTCA CACCCAACTCTTCTCTTCCTGAAAATCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCACCTAAAATCTGATTCTATT TCTAGTAATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTGCTGATAATGTTAAATTAGAGGAAGA TATTGTTAGGCCAGAGATGGTGGAAGAACCATCATCAAATAATGATATCCCAGGTCATGATGTATCACATTCGATGGATG TTGGAGAGCCACATAAGAAAAAGACACCTGTTGAGGAAAATAGCTATAATAATAAAAGTCCAAACCTGAACAAGCCCAAT AGCAGTGAAGATGTTGAGTATCCAGAAAAGTTAAACTTGGATAGAAGTTCTGGTGATGATTCCATGGAAGAGGATTTGCC TGAGAGCAAGCAATATGATTCTAAGTTTAATGTTGATGAACTTAGAGACAAGGGGGAGAGTGTTGAAGTGTCTATATTGA AGGAAGAAGGTCGTACTGCAGTTGTCGGAGATGGTCTATCTCCAGACAGAGGTGATACTCACCATGATAATGAAATTCCT CCTGTTTCCCTTGTTGAGAAACGAAAGTCTCATGGTAAGCTTTAATTTGTAATTTCTTTGTTCACTCAGCACCTTTAATC TTGTTCTTTACTTTATATTGCATCTTTGTCTGTTTTGTATTATTAGTGCCTATCTTCTGTCAGGCATGTGCTTCTGGCGC CCCAAGGCTGACTTAGAAGCCCTTAGCTCCTTTGGAGTGCCTTTGCCTTGAACTATCTTGTGGTTTCATGCTTAGTTTTA GGTAGCTAAGAATTGTTGAACCAGCATCCTGCATATTTTGTTAACTGCTATATTTTGTGATGATTATGATGTTGACAGTG TTTATATTTCCATATGCTGCTGTGCATTAGTTAGTTGAATTCTATTTACCATTCCTCTTGGACTTTCTTCTTTTGGGATC TCTTTAGGAGAAGCAAGCAAGAAATCATCATGCAACCTATGCTGATCTTCTTCCATACTGTTTTTCTTACATCTTAAATC ATAAACAAGCTTATTTGTGTAATTTTTTAGTTCTCCTGAATCATTTGAAAATTCTTACACAGATCAAGCTTCTGCTGGGA ACAATGAGCCTGCAAAACGGCAACGAAGGTGGAACTCTGAAACAGTTAAAGGTTCAGATCAACAAGTTCCGAGCCTCAGA CCTGCTACTACAAGAAAGGATGAGCCAATTGCTTCAAAAGGCAAGTTCTCTAGGTTGGATTCCTCAACAATTGATGATGC ACCCAAAGAACGCATTGGTAAGTTCACATTTATCCTGGTTGGTTGAAAACCTTCATGAATTGATTCTCTTATTTGAATTC CTGTCTTTTAGTCCAACATAAGAAATTTGGAGCAATTTGGAGCGAATCCAAATACACTTTCAAAATTTTACTGGGGGTCC TTCTCAAAGCAATTTGGAGCGAATCCAAATACATTTGAAAAAGTGCATTTCTGGAATATTTTATTTGCACATAAATAGTT GCATATCATACTTGTAAACATTTACATAACAACATTGTCCGTCTTCATGTTTTCTGGTGTCCTTATGTTACAGATTTTTC TTTTTTGCCTTATTAGCATGTCTTGTGCCCCCTGCCTCTCTTCCTTTCAGTCTAACTCTGTTGTTGTTTTTACCTTTGGT AGTTCCACCATCACAAAGGGCCCCGACATGTTCCCTCAGGATTGATCGTTTCCTCCGTCCATTTACCTTAAAAGCAGTAC AAGAGCTTCTTGGTAAAACTGGAAATGTCATCAGTTTCTGGATGGACCAAATAAAGACCCATTGCTATGTAACTGTAAGA CTCAATTCTTATAACTCCCTTCCTGCTAGTGAGGTTTCCCTGTTATGTTACTGCAATCATGATGTACACTTCTAAGTAAT CTTCTGTTGATGTGATGTAGTACTCATCTGTCGAGGAAGCCATTGAAACACGAAATGCTGTGTATAATCTGCAATGGCCT CGAAATGGCGGACACCTTTTAGTTGCTGAGTATGTGGATCCTCAAGAAGTGAAAATGAAGCTAGAACCTACTCCTGCTGT GGTTATCCCTGTCAGCAACGATTTAACAGCTCATCCTGCAACACCTTCCTCTAAGCCAGAGCCTCCCCCCCTTCAGCACA GTGAAGAGCCTTCGTTTCCAGCTATGCTCCTCCCTCCTCCACCACCGCTTTCAAAGCTACCACCAGCAGCAAGAGAACGT CTTCCCCCGCCTCCACCCCCAGAGAAAGTTGACCGACCTATTGTCACACTTGATGATCTCTTTCGTAAAACCAGTGCAGC TCCTCGAATTTACTATTTACCTTTATCTGAAGAGCAAGTTGCAGCAAAACTTGCAGTACAGGGAAAGAGCATCATTAAGC AGTAGGCCATGAGTGTAACGATTCTTCCCTGGCTACTTTTGGGATTTTCTTAATTTTTTGGCTTTGTAAATGCACTTATT GTTGTTGCCAGTGGTTACTTTCTGGTTCTTGATATTGTTACATGGTACCTGCCTTTTAGTGTTAGAACGGCACAAACTAA GAGCTGCTTGAGTGATAATTTTTGCATGCTGTTTGAACTAATTGAAGTGAACCTTTCCCCAGACATCTCCAACTTTGAAA CAATTGATGCTAGATCATGTTTTTTTCTCTGCCCATGGTGCCTAATTGTGGGGAATAATCACGTTAATAATCTTTCATTC TATTATTTTTTTCACGACCA
CDS sequence (LotjaGi4g1v0401100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCACCGTATCCGATTCTCGACGATAAACCCATCGATCAGTGGAGGGTTACGGAGCTAAAAGAGGAGTTAAAGAG AAGGAAACTAACCACCAAAGGTTTAAAGGATGATTTGATCAAGCGTTTGGATCAAGCTCTTCGCCTTGAAAGGGATGGTG CTGATGGTTCTGGTTCTCAGAAGGATGAGGTTAATGGTTTGGATGGTGATATAGCTGAGCTGAACGATTCACATATGAAG ACTGCAGTTGGTCTTGAAGTAGTTGATACAGCTGGAAAGGGAAGTGCAGCTGTAGTTGAACCAATGGAAAAAGAAAATGC AGGAATGAGTCCTGAGGTTGTGCATGATGACAGCAAAAAGAGTGACGATGTCGTCCCGGTTGACATTGACGGTGGTGTCT TGCGGGCGGTGGACCAAGCAGTGCGATATACGGACTTTCCAGCTGGTGTAGATTCTACAAATGGGAGAGAGGAGCTAACT ACCCACACTTCTACGACAGAGACCACCGTTACGGTCACTGAAAGTGTCTTAACAGAAGAAGTAGTCAGTGGTCAGGATTC TGTTAGTGCTGAACCACAAAGCATTCATGATCAGGATTCTGTTACAATGCAGGAGAATGAGGAGTCCAAGGCTGGGATGG ATGAAGACTCAAAGCCTCAGCTGGATTGTGACCTAAAGCCCTTGTGCGAGGATCTCACACCCAACTCTTCTCTTCCTGAA AATCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCACCTAAAATCTGATTCTATTTCTAGTAATTCTGTGTCAATTAA TCAAAAGAATGAACTAAAGGATACTATAATTGCTGATAATGTTAAATTAGAGGAAGATATTGTTAGGCCAGAGATGGTGG AAGAACCATCATCAAATAATGATATCCCAGGTCATGATGTATCACATTCGATGGATGTTGGAGAGCCACATAAGAAAAAG ACACCTGTTGAGGAAAATAGCTATAATAATAAAAGTCCAAACCTGAACAAGCCCAATAGCAGTGAAGATGTTGAGTATCC AGAAAAGTTAAACTTGGATAGAAGTTCTGGTGATGATTCCATGGAAGAGGATTTGCCTGAGAGCAAGCAATATGATTCTA AGTTTAATGTTGATGAACTTAGAGACAAGGGGGAGAGTGTTGAAGTGTCTATATTGAAGGAAGAAGGTCGTACTGCAGTT GTCGGAGATGGTCTATCTCCAGACAGAGGTGATACTCACCATGATAATGAAATTCCTCCTGTTTCCCTTGTTGAGAAACG AAAGTCTCATGATCAAGCTTCTGCTGGGAACAATGAGCCTGCAAAACGGCAACGAAGGTGGAACTCTGAAACAGTTAAAG GTTCAGATCAACAAGTTCCGAGCCTCAGACCTGCTACTACAAGAAAGGATGAGCCAATTGCTTCAAAAGGCAAGTTCTCT AGGTTGGATTCCTCAACAATTGATGATGCACCCAAAGAACGCATTGTTCCACCATCACAAAGGGCCCCGACATGTTCCCT CAGGATTGATCGTTTCCTCCGTCCATTTACCTTAAAAGCAGTACAAGAGCTTCTTGGTAAAACTGGAAATGTCATCAGTT TCTGGATGGACCAAATAAAGACCCATTGCTATGTAACTTACTCATCTGTCGAGGAAGCCATTGAAACACGAAATGCTGTG TATAATCTGCAATGGCCTCGAAATGGCGGACACCTTTTAGTTGCTGAGTATGTGGATCCTCAAGAAGTGAAAATGAAGCT AGAACCTACTCCTGCTGTGGTTATCCCTGTCAGCAACGATTTAACAGCTCATCCTGCAACACCTTCCTCTAAGCCAGAGC CTCCCCCCCTTCAGCACAGTGAAGAGCCTTCGTTTCCAGCTATGCTCCTCCCTCCTCCACCACCGCTTTCAAAGCTACCA CCAGCAGCAAGAGAACGTCTTCCCCCGCCTCCACCCCCAGAGAAAGTTGACCGACCTATTGTCACACTTGATGATCTCTT TCGTAAAACCAGTGCAGCTCCTCGAATTTACTATTTACCTTTATCTGAAGAGCAAGTTGCAGCAAAACTTGCAGTACAGG GAAAGAGCATCATTAAGCAGTAG
Protein sequence (LotjaGi4g1v0401100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPYPILDDKPIDQWRVTELKEELKRRKLTTKGLKDDLIKRLDQALRLERDGADGSGSQKDEVNGLDGDIAELNDSHMK TAVGLEVVDTAGKGSAAVVEPMEKENAGMSPEVVHDDSKKSDDVVPVDIDGGVLRAVDQAVRYTDFPAGVDSTNGREELT THTSTTETTVTVTESVLTEEVVSGQDSVSAEPQSIHDQDSVTMQENEESKAGMDEDSKPQLDCDLKPLCEDLTPNSSLPE NQVSEVNPSLGSHLKSDSISSNSVSINQKNELKDTIIADNVKLEEDIVRPEMVEEPSSNNDIPGHDVSHSMDVGEPHKKK TPVEENSYNNKSPNLNKPNSSEDVEYPEKLNLDRSSGDDSMEEDLPESKQYDSKFNVDELRDKGESVEVSILKEEGRTAV VGDGLSPDRGDTHHDNEIPPVSLVEKRKSHDQASAGNNEPAKRQRRWNSETVKGSDQQVPSLRPATTRKDEPIASKGKFS RLDSSTIDDAPKERIVPPSQRAPTCSLRIDRFLRPFTLKAVQELLGKTGNVISFWMDQIKTHCYVTYSSVEEAIETRNAV YNLQWPRNGGHLLVAEYVDPQEVKMKLEPTPAVVIPVSNDLTAHPATPSSKPEPPPLQHSEEPSFPAMLLPPPPPLSKLP PAARERLPPPPPPEKVDRPIVTLDDLFRKTSAAPRIYYLPLSEEQVAAKLAVQGKSIIKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 696 | 696 | 1.0E-243 | – | |
| PANTHER | 1 | 696 | 696 | 1.0E-243 | – | |
| Gene3D | 3 | 57 | 55 | 8.5E-11 | ||
| SUPERFAMILY | 13 | 50 | 38 | 3.66E-8 | ||
| ProSiteProfiles | 13 | 47 | 35 | 9.706 | ||
| SMART | 13 | 47 | 35 | 2.5E-9 | ||
| Pfam | 15 | 47 | 33 | 9.5E-10 | ||
| MobiDBLite | 49 | 68 | 20 | - | – | |
| MobiDBLite | 106 | 125 | 20 | - | – | |
| MobiDBLite | 109 | 125 | 17 | - | – | |
| MobiDBLite | 148 | 263 | 116 | - | – | |
| MobiDBLite | 154 | 200 | 47 | - | – | |
| MobiDBLite | 201 | 225 | 25 | - | – | |
| MobiDBLite | 234 | 263 | 30 | - | – | |
| MobiDBLite | 293 | 499 | 207 | - | – | |
| MobiDBLite | 308 | 325 | 18 | - | – | |
| MobiDBLite | 326 | 341 | 16 | - | – | |
| MobiDBLite | 342 | 392 | 51 | - | – | |
| MobiDBLite | 407 | 433 | 27 | - | – | |
| MobiDBLite | 469 | 490 | 22 | - | – | |
| SUPERFAMILY | 498 | 586 | 89 | 3.64E-8 | ||
| CDD | 504 | 588 | 85 | 3.65373E-37 | ||
| MobiDBLite | 600 | 660 | 61 | - | – | |
| MobiDBLite | 608 | 657 | 50 | - | – | |
| Pfam | 654 | 693 | 40 | 2.1E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0401100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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