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The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.
We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.716s to perform.
| Transcript | Name | Description | Chr | Start | End | Strand | Domain predictions | GO predictions |
|---|---|---|---|---|---|---|---|---|
| n.a. | E3 SUMO-protein ligase SIZ1; TAIR: AT5G60410.1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein; Swiss-Prot: sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1; TrEMBL-Plants: tr|G7JQG1|G7JQG1_MEDTR E3 SUMO-protein ligase SIZ1; Found in the gene: LotjaGi2g1v0362700 | LjG1.1_chr2 | 85997006 | 86014478 | - | – | ||
| n.a. | E3 SUMO-protein ligase SIZ1; TAIR: AT5G60410.1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein; Swiss-Prot: sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1; TrEMBL-Plants: tr|A0A1J7HSK9|A0A1J7HSK9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0159600 | LjG1.1_chr3 | 21765713 | 21778761 | - | – | ||
| n.a. | E3 SUMO-protein ligase SIZ1; TAIR: AT5G60410.1 DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein; Swiss-Prot: sp|Q680Q4|SIZ1_ARATH E3 SUMO-protein ligase SIZ1; TrEMBL-Plants: tr|A0A1J7HSK9|A0A1J7HSK9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0159600 | LjG1.1_chr3 | 21766539 | 21778675 | - | – | ||
| n.a. | Zinc finger CCCH domain protein, putative; TAIR: AT5G66840.1 SAP domain-containing protein; Swiss-Prot: sp|Q338N2|C3H62_ORYSJ Zinc finger CCCH domain-containing protein 62; TrEMBL-Plants: tr|K7MEJ2|K7MEJ2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0411300 | LjG1.1_chr3 | 81496432 | 81500899 | + | – | ||
| n.a. | SAP domain-containing protein; TAIR: AT5G63460.1 SAP domain-containing protein; Swiss-Prot: sp|Q2H0I3|KU70_CHAGB ATP-dependent DNA helicase II subunit 1; TrEMBL-Plants: tr|I3S8N0|I3S8N0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0222300 | LjG1.1_chr4 | 52740193 | 52745198 | + | – | ||
| n.a. | SAP domain-containing protein; TAIR: AT5G63460.1 SAP domain-containing protein; Swiss-Prot: sp|O74871|YCW3_SCHPO Uncharacterized protein C31H12.03c; TrEMBL-Plants: tr|I3S8N0|I3S8N0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0222300 | LjG1.1_chr4 | 52740217 | 52744929 | + | – | ||
| n.a. | Apoptotic chromatin condensation inducer in the nucleus; TAIR: AT4G39680.1 SAP domain-containing protein; Swiss-Prot: sp|Q9UKV3|ACINU_HUMAN Apoptotic chromatin condensation inducer in the nucleus; TrEMBL-Plants: tr|A0A0B2RHC9|A0A0B2RHC9_GLYSO Apoptotic chromatin condensation inducer in the nucleus; Found in the gene: LotjaGi4g1v0401100 | LjG1.1_chr4 | 77860560 | 77869216 | + | – | ||
| n.a. | Apoptotic chromatin condensation inducer in the nucleus; TAIR: AT4G39680.1 SAP domain-containing protein; Swiss-Prot: sp|Q9UKV3|ACINU_HUMAN Apoptotic chromatin condensation inducer in the nucleus; TrEMBL-Plants: tr|A0A0B2RHC9|A0A0B2RHC9_GLYSO Apoptotic chromatin condensation inducer in the nucleus; Found in the gene: LotjaGi4g1v0401100 | LjG1.1_chr4 | 77864906 | 77869085 | + | – | ||
| n.a. | DNA-(apurinic or apyrimidinic site) lyase; TAIR: AT2G41460.1 apurinic endonuclease-redox protein; Swiss-Prot: sp|P45951|ARP_ARATH DNA-(apurinic or apyrimidinic site) lyase, chloroplastic; TrEMBL-Plants: tr|K7K9G6|K7K9G6_SOYBN DNA-(apurinic or apyrimidinic site) lyase; Found in the gene: LotjaGi5g1v0135000 | LjG1.1_chr5 | 31929476 | 31938027 | + | – | ||
| n.a. | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G04260.1 plastid transcriptionally active 3; Swiss-Prot: sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680; TrEMBL-Plants: tr|A0A151U5M8|A0A151U5M8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0205300 | LjG1.1_chr5 | 50744315 | 50755108 | - | – | ||
| n.a. | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G04260.1 plastid transcriptionally active 3; Swiss-Prot: sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680; TrEMBL-Plants: tr|A0A151U5M8|A0A151U5M8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0205300 | LjG1.1_chr5 | 50745404 | 50754916 | - | – | ||
| n.a. | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G04260.1 plastid transcriptionally active 3; Swiss-Prot: sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620; TrEMBL-Plants: tr|A0A151U5M8|A0A151U5M8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0205300 | LjG1.1_chr5 | 50745412 | 50754906 | - | – | ||
| n.a. | Poly [ADP]-ribose] polymerase; TAIR: AT4G02390.2 poly(ADP-ribose) polymerase; Swiss-Prot: sp|O50017|PARP2_MAIZE Poly [ADP]-ribose] polymerase 2; TrEMBL-Plants: tr|A0A151U4Q3|A0A151U4Q3_CAJCA Poly [ADP]-ribose] polymerase; Found in the gene: LotjaGi5g1v0249900 | LjG1.1_chr5 | 55839892 | 55848465 | + | – | ||
| n.a. | ATP-dependent DNA helicase 2 subunit Ku70; TAIR: AT1G16970.1 ATP-dependent DNA helicase 2 subunit Ku70-like protein; Swiss-Prot: sp|Q9FQ08|KU70_ARATH ATP-dependent DNA helicase 2 subunit KU70; TrEMBL-Plants: tr|K7N5J8|K7N5J8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0365500 | LjG1.1_chr5 | 68017827 | 68032731 | + | – | ||
| n.a. | Apoptotic chromatin condensation inducer in the nucleus; TAIR: AT4G39680.1 SAP domain-containing protein; Swiss-Prot: sp|Q9JIX8|ACINU_MOUSE Apoptotic chromatin condensation inducer in the nucleus; TrEMBL-Plants: tr|A0A0B2RHC9|A0A0B2RHC9_GLYSO Apoptotic chromatin condensation inducer in the nucleus; Found in the gene: LotjaGi6g1v0084900 | LjG1.1_chr6 | 16850615 | 16856076 | - | – |