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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0404100 |
| Transcript ID | LotjaGi4g1v0404100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MALE GAMETOPHYTE DEFECTIVE 1; TAIR: AT2G21870.1 MALE GAMETOPHYTE DEFECTIVE 1; Swiss-Prot: sp|Q9SJ12|ATP7_ARATH Probable ATP synthase 24 kDa subunit, mitochondrial; TrEMBL-Plants: tr|I3SCF3|I3SCF3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0404100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78063717..78067717) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTCGGGGCATAAAAAAAATAAAAATAAAAAGTAAAAAAGATGGTTTCAGAGAATTTCAGCCGTAGATTATAATGACC TAGCTCGACGTCATAGGATATCGAACGGTTGATATATAAGGCGAAAGCTATGCATCATGAAAATGGTGCACCCTACAAGT AGCAGATCAGTCCCCCACTGTGAAGAAGTAGGAATTTTCCCATCTCCATCGAACAAAACGAAGAAAGAAGCCCTAACGCG ATTGAGGCAGTGAGAAAGCGAGAGAAAGAGAAATCAAGCTCATCAGCACAACCATGGCACTCCGTGCTCGTCTCTTTTCC AAATCCAAATTGGTTCGTATCTCCATTCCTTCTCTTCTCCATAGCCACCGATTCTCACAACCGATTCCATTTCATTTGTT TTTGGTTCTCACTTTGTATTTTCATTTCGGGATCTACACAGATTTTGCTTTTTCTTCAACGATATACCTAGCGATAACTG ATTATCCATCTCACCTTTCGAGATAACAATTTAAAAAAAAATTTGGAGAATTTTCGACTAGATTTGAAGCTATTAGATTC CATTTGTTAATCCCTTTTGGTCAATTAGGTCATTGATTTGGGGCATTTGCGTTTTACTTATTGGCTGATTTTGATATGCA TAACTTGTTTATTAATTAATAATATCAGCTTTGTGATCTACCTGCTGATTTTCTGAAATGTGCGCATTTTTATCATGTTA TTGTAGGCCTATGGTAGCCAGGTACTTCTGCAAAAGGAGTATGCTGTTCCGGTTCGTCACTTTGCTAAAGAGTCTGCCCC TCCTGCCCTTAAGGGAGATGGTGAGTTCTTGTATTTTGTTTATTCTGTGATTTCGTTTATCGAGTTATAAATACCGGGGA TAGTGGGATTTAAGGCTTGGTGATGGGTGTTTTTTGGTGGTGTTGTGGGTCACTAGTCATCCAATTCCTTGGGGGAACCT TCTGTAATGTTAGACATAGTTAATCTAGTTCAAGCCAAAGAAATTCCGTGCTATATGATTTTATAGTTTATCCAGTTGCT CTACTTTAGTTGTTTAATTGGCTTTTTATGCTTGCGGCTTGAGTTGGCTGTTTGTGTAGAAACATGCATTTTGATACTTA TAGAAGTTTTTTTTTTTCTAATCACATTCTGACTGTATACTCTTAATTGAATGCAAAAGAGATGCTGAAGAACGTTTTTG TCGAGGTGAAGAGCAAATTTGAGACAGCCTTGGGAATATTAAAGAAGGAGAAGATCACCATCGCTCCAGAGGATCCAGCT GCTGTTTCTCATTATGCCAATGTCATGAAAACAGTCAGAGAGAAGTTAGTCTCTACTTTATCTGTCATTTTGCTAATATG TTTTTAGTTTGTCTTGTAATGTCCCAAAATATTGTATTATCTTTTTTCTTAGTTATATCGTGCCTAAGATTTCCTGTGCA TAATGCAGGGCAAACTTGTTGTCAGAGTCCCAAGACATCCTTGCCACCATTGAAACAGAGACACAAGATATTCCAGATGC TCGAACTTATCTTTTGACCTTGAAGGAAATAAGAACCAAGTGTGTGATGATCTATCATTGATATCTGTCTGTCCTTTTAC TTTTTTAGTTTGGACCAATTATACTTTTATTTTGTGATATGTAATATGTTTCTTTCTTTTCAGTTTACATTTTTTTCCAT TGTCAAATAGTGCTTTTGACTTGAACCTCTGGTTCTAGAAATTGCCAAGTCTCTATTTTTTTTAATCGTGACTTCCGTGG AGTATTACTGTGATTTACCTGATTAGTCATCCTTTTCAATCATCTGTGATATACTGATATGCATATGTTTTATACATAGA AGTGATGGAAAAGGCAACATGGTGTAAACATCCCTTGTTTCATGGTGAATTGGGCTATAGTCACATTAGCTCATATTTAT GTGTACATTCTTTTACAGGAAAGGTCTTTTAGATGATCTTGGTGCAGAGGCTATGATGATCGATGCATTGGACAAAGTTG AAAAGGAGTTAAAGAAACCTCTGCTGAGAAATGATAAGAAAGGAATGGACCTTCTCTTGGCAGAGTTTGATAAGATTAAT AAGCAGTAAGTTCAGATTCCTAGATCTCTTCTTGACTTGTTGGGCTGATATTAAGTGGCATCTAGATTATATCCTTTCAT CTGCAGTTATTTCCATTTACATTGCCATCGATTTTGAGCACGAGTTTTTCTAATTATTTGGTTATATTATTAATATTTGT TTTCTGTTAGAGTAGTATTTACAACTCACATATCTATTGTAAAATGCTCAGTTCGTCTAATGTTGAAGAAAAAGTTTTTT TTTTGTAAATGGAGAAAATTTCATTGAGTAGAAGGAAGATGTCAGTTGATTTTTCTAATTTATGAAGTTTTTCTGTATCT TTATTCTTTATGAAAATATTGAACCTAGCATGCATTGTTGCTTGTTTGTTGCTTGTATAGGCTATTCTTTGTTGGTTGTC ATTGGCCTACTTTTTTGGTTGGGTTGTTTAAATGTCTAATTCACTACCCGAGGATTCAACTGTTTAAATTCTCTTCAGTT AAGCAGAAGGAATAGCTGGTTTATGATATCTGTACTTATTTTATTTATTTTTGACTTTCCTTGCTTCTTTTCTCTACCTT TGGTGGTGCCACCTTAGACTTGGAATTCGGAAAGAAGATCTTCCAAAGTATGAAGAGCAGCTAGAACTTAAACTAGCCAA AGCACAGCTGGAGGAGCTGAAGAAGGATGTTGTTGAGGCGATGGAAACTCAAAAGAAGAGGTATTACTCATGACACTTTT CTTATTATAGTATTTTTTTCTTTACATCATGCTCTTGATCAAGATAATTAAACTTGAGATTCTGCCGTGAGGAGGGGATA AATCATGGGATTGTAACACAGTTTGTACTTATCTTTGTTTTCTTTGTGAGTTTAACTCTAAAGATAGCCTTCACTCATCA TTGTTCGCTATATCTTTTGAATTTGTAACATATGAAAATGACACAATGACCAATTGATTTGTTGTAAATATGACTATTGT TTTCTCTTCTAATGTTAGCAATGCAGTGTCTTAGAAATTTTAAATCATTTTGAGATTTATTTTTCCTTGTATGTTTGCTG TGGCAGGGAGGAATTCAAGGATGAGCGTGAAGCGGTTGATGTCAAAACTTTGGACATCCGGAACTTCCTTTAAATAAAGG CACTTAATCGGTTGATGTCAAAACTTCAAGATGTTTGCATATATTAGAATGTTGCATTTGGATAATGATGAAGCCATTTT TGTTCAATAAATAGACACACCAATGATTTTGAAGTGCTATACTGATGCCAGTTTGAAGATTCTTGAATTTTCGAGGTCTC TATATTCCAAATTCCTTGTTGAAACTGGGAATTTGAGTGATCAAATTTTCTAATTTTTTCTTCTGTTTTGTTTCCCAAGT ACACTTATTTTCTTATTAATATTACGGCTGTTCCTGATATTGATCATTTGATCTGTTCGATCAACTAGAATTCATCTATC CAGGCAATCCTCTTTCAGCATTGAAAGTAAATGAAATTATGTGCTCTTAATCGTCAGATTTAATTGCATGACTTTAACTG GATAATATGTTCCTGGAAGTTTACAGATTTTAACCTTTTGGACTATTTATTTTACCAAATACTAAAAGGATGATGTGATG CTAGAATGATGACTTCCATTTGGAAGCAAATTGAAAATGTGTTTCTGTAGATATAATACAGAAGCGTCTCTTGATGTTTG ACACGATTCCTCTCAAAATATTGCAGGAGTTAGTGTTAATATTTTCAACGGTTTTTTTCTTTCTATTGAAACACGATTAA TTGATTTCCAGGTTATAACTTATACCAGGTTTAATGCGAAGTTCAAGTAGGTTTAGTTGTGGGGGATGTTGTACAACTAG TTATTCTTCTTTAGAAAAATGCTTATGAGTTTGTTATGACATGTCAGCTCAACATCTATTTAGCTTAAAGCATATTTGAA G
CDS sequence (LotjaGi4g1v0404100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACTCCGTGCTCGTCTCTTTTCCAAATCCAAATTGGCCTATGGTAGCCAGGTACTTCTGCAAAAGGAGTATGCTGT TCCGGTTCGTCACTTTGCTAAAGAGTCTGCCCCTCCTGCCCTTAAGGGAGATGAGATGCTGAAGAACGTTTTTGTCGAGG TGAAGAGCAAATTTGAGACAGCCTTGGGAATATTAAAGAAGGAGAAGATCACCATCGCTCCAGAGGATCCAGCTGCTGTT TCTCATTATGCCAATGTCATGAAAACAGTCAGAGAGAAGGCAAACTTGTTGTCAGAGTCCCAAGACATCCTTGCCACCAT TGAAACAGAGACACAAGATATTCCAGATGCTCGAACTTATCTTTTGACCTTGAAGGAAATAAGAACCAAGAAAGGTCTTT TAGATGATCTTGGTGCAGAGGCTATGATGATCGATGCATTGGACAAAGTTGAAAAGGAGTTAAAGAAACCTCTGCTGAGA AATGATAAGAAAGGAATGGACCTTCTCTTGGCAGAGTTTGATAAGATTAATAAGCAACTTGGAATTCGGAAAGAAGATCT TCCAAAGTATGAAGAGCAGCTAGAACTTAAACTAGCCAAAGCACAGCTGGAGGAGCTGAAGAAGGATGTTGTTGAGGCGA TGGAAACTCAAAAGAAGAGGGAGGAATTCAAGGATGAGCGTGAAGCGGTTGATGTCAAAACTTTGGACATCCGGAACTTC CTTTAA
Protein sequence (LotjaGi4g1v0404100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALRARLFSKSKLAYGSQVLLQKEYAVPVRHFAKESAPPALKGDEMLKNVFVEVKSKFETALGILKKEKITIAPEDPAAV SHYANVMKTVREKANLLSESQDILATIETETQDIPDARTYLLTLKEIRTKKGLLDDLGAEAMMIDALDKVEKELKKPLLR NDKKGMDLLLAEFDKINKQLGIRKEDLPKYEEQLELKLAKAQLEELKKDVVEAMETQKKREEFKDEREAVDVKTLDIRNF L
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 241 | 241 | 8.5E-121 | ||
| Pfam | 33 | 219 | 187 | 3.5E-78 | ||
| Coils | 189 | 220 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pollen development | The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. |
Expression pattern of LotjaGi4g1v0404100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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