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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0404100 |
| Transcript ID | LotjaGi4g1v0404100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Male gametophyte defective 1; TAIR: AT2G21870.1 MALE GAMETOPHYTE DEFECTIVE 1; Swiss-Prot: sp|Q9SJ12|ATP7_ARATH Probable ATP synthase 24 kDa subunit, mitochondrial; TrEMBL-Plants: tr|I3SCF3|I3SCF3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0404100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78064406..78066909) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTGAAATGTGCGCATTTTTATCATGTTATTGTAGGCCTATGGTAGCCAGGTACTTCTGCAAAAGGAGTATGCTGTTC CGGTTCGTCACTTTGCTAAAGAGTCTGCCCCTCCTGCCCTTAAGGGAGATGGTGAGTTCTTGTATTTTGTTTATTCTGTG ATTTCGTTTATCGAGTTATAAATACCGGGGATAGTGGGATTTAAGGCTTGGTGATGGGTGTTTTTTGGTGGTGTTGTGGG TCACTAGTCATCCAATTCCTTGGGGGAACCTTCTGTAATGTTAGACATAGTTAATCTAGTTCAAGCCAAAGAAATTCCGT GCTATATGATTTTATAGTTTATCCAGTTGCTCTACTTTAGTTGTTTAATTGGCTTTTTATGCTTGCGGCTTGAGTTGGCT GTTTGTGTAGAAACATGCATTTTGATACTTATAGAAGTTTTTTTTTTTCTAATCACATTCTGACTGTATACTCTTAATTG AATGCAAAAGAGATGCTGAAGAACGTTTTTGTCGAGGTGAAGAGCAAATTTGAGACAGCCTTGGGAATATTAAAGAAGGA GAAGATCACCATCGCTCCAGAGGATCCAGCTGCTGTTTCTCATTATGCCAATGTCATGAAAACAGTCAGAGAGAAGTTAG TCTCTACTTTATCTGTCATTTTGCTAATATGTTTTTAGTTTGTCTTGTAATGTCCCAAAATATTGTATTATCTTTTTTCT TAGTTATATCGTGCCTAAGATTTCCTGTGCATAATGCAGGGCAAACTTGTTGTCAGAGTCCCAAGACATCCTTGCCACCA TTGAAACAGAGACACAAGATATTCCAGATGCTCGAACTTATCTTTTGACCTTGAAGGAAATAAGAACCAAGTGTGTGATG ATCTATCATTGATATCTGTCTGTCCTTTTACTTTTTTAGTTTGGACCAATTATACTTTTATTTTGTGATATGTAATATGT TTCTTTCTTTTCAGTTTACATTTTTTTCCATTGTCAAATAGTGCTTTTGACTTGAACCTCTGGTTCTAGAAATTGCCAAG TCTCTATTTTTTTTAATCGTGACTTCCGTGGAGTATTACTGTGATTTACCTGATTAGTCATCCTTTTCAATCATCTGTGA TATACTGATATGCATATGTTTTATACATAGAAGTGATGGAAAAGGCAACATGGTGTAAACATCCCTTGTTTCATGGTGAA TTGGGCTATAGTCACATTAGCTCATATTTATGTGTACATTCTTTTACAGGAAAGGTCTTTTAGATGATCTTGGTGCAGAG GCTATGATGATCGATGCATTGGACAAAGTTGAAAAGGAGTTAAAGAAACCTCTGCTGAGAAATGATAAGAAAGGAATGGA CCTTCTCTTGGCAGAGTTTGATAAGATTAATAAGCAGTAAGTTCAGATTCCTAGATCTCTTCTTGACTTGTTGGGCTGAT ATTAAGTGGCATCTAGATTATATCCTTTCATCTGCAGTTATTTCCATTTACATTGCCATCGATTTTGAGCACGAGTTTTT CTAATTATTTGGTTATATTATTAATATTTGTTTTCTGTTAGAGTAGTATTTACAACTCACATATCTATTGTAAAATGCTC AGTTCGTCTAATGTTGAAGAAAAAGTTTTTTTTTTGTAAATGGAGAAAATTTCATTGAGTAGAAGGAAGATGTCAGTTGA TTTTTCTAATTTATGAAGTTTTTCTGTATCTTTATTCTTTATGAAAATATTGAACCTAGCATGCATTGTTGCTTGTTTGT TGCTTGTATAGGCTATTCTTTGTTGGTTGTCATTGGCCTACTTTTTTGGTTGGGTTGTTTAAATGTCTAATTCACTACCC GAGGATTCAACTGTTTAAATTCTCTTCAGTTAAGCAGAAGGAATAGCTGGTTTATGATATCTGTACTTATTTTATTTATT TTTGACTTTCCTTGCTTCTTTTCTCTACCTTTGGTGGTGCCACCTTAGACTTGGAATTCGGAAAGAAGATCTTCCAAAGT ATGAAGAGCAGCTAGAACTTAAACTAGCCAAAGCACAGCTGGAGGAGCTGAAGAAGGATGTTGTTGAGGCGATGGAAACT CAAAAGAAGAGGTATTACTCATGACACTTTTCTTATTATAGTATTTTTTTCTTTACATCATGCTCTTGATCAAGATAATT AAACTTGAGATTCTGCCGTGAGGAGGGGATAAATCATGGGATTGTAACACAGTTTGTACTTATCTTTGTTTTCTTTGTGA GTTTAACTCTAAAGATAGCCTTCACTCATCATTGTTCGCTATATCTTTTGAATTTGTAACATATGAAAATGACACAATGA CCAATTGATTTGTTGTAAATATGACTATTGTTTTCTCTTCTAATGTTAGCAATGCAGTGTCTTAGAAATTTTAAATCATT TTGAGATTTATTTTTCCTTGTATGTTTGCTGTGGCAGGGAGGAATTCAAGGATGAGCGTGAAGCGGTTGATGTCAAAACT TTGGACATCCGGAACTTCCTTTAA
CDS sequence (LotjaGi4g1v0404100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCGCATTTTTATCATGTTATTGTAGGCCTATGGTAGCCAGGTACTTCTGCAAAAGGAGTATGCTGTTCCGGTTCGT CACTTTGCTAAAGAGTCTGCCCCTCCTGCCCTTAAGGGAGATGATGCTGAAGAACGTTTTTGTCGAGGTGAAGAGCAAAT TTGAGACAGCCTTGGGAATATTAAAGAAGGAGAAGATCACCATCGCTCCAGAGGATCCAGCTGCTGTTTCTCATTATGCC AATGTCATGAAAACAGTCAGAGAGAAGGCAAACTTGTTGTCAGAGTCCCAAGACATCCTTGCCACCATTGAAACAGAGAC ACAAGATATTCCAGATGCTCGAACTTATCTTTTGACCTTGAAGGAAATAAGAACCAAGAAAGGTCTTTTAGATGATCTTG GTGCAGAGGCTATGATGATCGATGCATTGGACAAAGTTGAAAAGGAGTTAAAGAAACCTCTGCTGAGAAATGATAAGAAA GGAATGGACCTTCTCTTGGCAGAGTTTGATAAGATTAATAAGCAACTTGGAATTCGGAAAGAAGATCTTCCAAAGTATGA AGAGCAGCTAGAACTTAAACTAGCCAAAGCACAGCTGGAGGAGCTGAAGAAGGATGTTGTTGAGGCGATGGAAACTCAAA AGAAGAGGGAGGAATTCAAGGATGAGCGTGAAGCGGTTGATGTCAAAACTTTGGACATCCGGAACTTCCTTTAA
Protein sequence (LotjaGi4g1v0404100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCAFLSCYCRPMVARYFCKRSMLFRFVTLLKSLPLLPLREMMLKNVFVEVKSKFETALGILKKEKITIAPEDPAAVSHYA NVMKTVREKANLLSESQDILATIETETQDIPDARTYLLTLKEIRTKKGLLDDLGAEAMMIDALDKVEKELKKPLLRNDKK GMDLLLAEFDKINKQLGIRKEDLPKYEEQLELKLAKAQLEELKKDVVEAMETQKKREEFKDEREAVDVKTLDIRNFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 41 | 237 | 197 | 7.7E-103 | ||
| Pfam | 41 | 215 | 175 | 2.4E-74 | ||
| Coils | 185 | 216 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Pollen development | The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. |
Expression pattern of LotjaGi4g1v0404100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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