Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0420100 |
| Transcript ID | LotjaGi4g1v0420100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GAGA-binding transcriptional activator; TAIR: AT2G21240.1 basic pentacysteine 4; Swiss-Prot: sp|Q8S8C6|BPC4_ARATH Protein BASIC PENTACYSTEINE4; TrEMBL-Plants: tr|H1ZNA3|H1ZNA3_LOTJA GAGA-binding transcriptional activator; Found in the gene: LotjaGi4g1v0420100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79546828..79551507) extracted from Lotus japonicus Gifu genome v1.2.
AGAAGGAAGATTAAGGTTTAAAAATCAAGTGAAGAGTGAAGGTTAGGAAGGTGAAACGCTCGCAGAGCAGAGTCGAACGA CGATGTCGTTGTAGTGTGTAGGTTTCTTCCTCTTCTTCTTCTTCTTCTTCTTGTTTCCCCTAACATCAAATCCAACACAC TCTCTCTCTCTCTCTCTCTGTGCCTTCGATTCCATTGGAGTAACTGTAAGTTTTCTCTCTCATTGCACCTTTAACTCTCT CTCTCTCTCTCTATTTTCCTGATTAACGAACGCTATCAATTTGTCAAGTTTTTTCTTTTCTTTTCTGGGTGATGTTCTTA ACGTTCTAGCTAGTTGCTCTTTCTTCCAAAACCACTTTTTTTTTTCTTTTTTTCCAAATTCACTACAAGATTCATTACAT GCTGCAATTTCTTGATTTGTCTGCAAACCCCTTTTCTCCCTCTCATTCTTGTCTTTGCATTGCATGCTTTGTTTTACCAA ATGTATCACTCAGTTCTTTATTTCGGAAATTGAAAAAAAAATTATTATTTTGAAGTTATTAATATGCTCATTAGCACAAT GATGTGATCACAGCTTGAAAATATATTAGGCCACATTTGTATTATTAGATTAGCTAATAGGTAGTCATGCCATAACTTCA AATTGGGAAAAAAAGTTCTTTGAGGTTCCCTTTCCTTTGGGGAAAGCAGTGTTGTCAAGTAGCCGATATAGTGGCGCAAT AGCGGTATAGCGTAGCGCTCTGAGGGCTCACCGCGATCCGCTATTTTCCACTCTGAGGGCTTGACTGCAAATTTTTGGTT TTCCGCTATCCGCGATTAACAACACTGGGGAAAGTGTAGAATGTTTTTTGTTGGTGAATTCCATTCATTAGCTATCCCTT TTTTATTTCTTGTACTTGAAATATTGAATGTTCAGCCTGTAGTGTAGCCAATTTACTCACATGCTTTAACTTGGATCTTT TACCAGAGCAACAAGTTCTGATTTGTACCTAGGGTATCGGTTCTTCTTTAACTAGTGGATTTGTTTGTTTTTCACTTATC TAAGATAATCTTGATCAAATATCATATTCTTGACGCTTCTCCTGCATTATGAGATATTTAAATAGGCATTTAGCTAAGGT TTCCTCATGTTGAATTGAAAGCTTTCTGGCTTCTCTTGCTACTCTGCGCTTCCTTTCAATACTTTGTATGATTCATGCTA AGGAAATAGTGAGAAGGATTTGTCAAGTGAAAATGAAGCATCTTATGCATTTAGTGATTATCTTGCTCTCTACTAAGTGT TTATGGCCTGGTATTCATCCTTAGATGGTTGGTGACCTTATCTTTTTCTTAGAAAATTAAAATAATAGCCATGTTCTTCA AATAACGATAACCCATGTAACATGATGTTTCTAAGATGCCTACGCTACAATTTTTAACTTGCATATTCATTGAGATTGGG GACGTATGATCAGAACAATGTGCTTTTGACAATATGGTTACTTAACTCTGATGGACAAGGTCATTCATTAGCTTTATAAT TGTCATATCTTAATGTTTAAGTTGCAAACTTATCGTCTGTTTGTCTCAAGCATTTGTAGTAAGAAAATACCCATTTTCCT TTTGCAAGTATGGAAAACAAACATGCCTTTACTTATTTAGTTTTTTCCTTTTCTCCCCTGAGGAACTCATAAGCTGTGTC TCTGGTATTGATTTTACCATAAAAATGGGGTAGCTTATACTAAATCTGGAATACCTACTTATAAATCTTTCTATTTTCCA TGGTGCAACTTGATGTTAAGTGGAATTTTGAAGATGTTATATTGATGGATGTTGCAAGACTGCAAATTTTCCTTTTACTG AATGATATTATTTATTACCATGTTTTAAGACTGTCAGTTGAGAATTGAGATGATTATCAACTCAGTTAAGGACTTAAGGC CATTAGTGCCTTTAGTGCTGTTGGCTAAGGCTGACAACTCATGGTCTGTCAAATCTGCATGAATGCATAATAATTATACT TTTATTAGTTTTATTGATTAAGTTTCAAGAAAAATCTGTACAATGATGAAAAGTTAACTTAATCCTCAAATTTCTAGCCT ACATTTGAGAAGGAAGGATGAGTTTCATGTAATTTTACAGAAGCCACATGTTTTTAATGCTATTGATTGATTTCAAAAAT AACATCACACTAGCACTTGACACAAGTGCTGATAGGGATATCATACCTGGTATTTTATGGATACAGCCATACCAAATGTC CAAATGAAGAGCTTTAGATCTGTGTTATCTGATGCCCCCAATAAGAAATTTTCTGATGTTTTGCTGTTAGATTTAGTTAA TGGCTGTATTTGCTTCTTAACTTTCATGCTCACTACTATTTGTTTTCTCAGGTTTATAGTACACATTAGATTGTGCCATT TATTTAAAATTGTCATAGTAGAATTTATTGTTTTAGTGAATTTTACTTACTAACAGCGCTAATAAAGTCTAGCACTATCT ATCATAAATTTTGCTATATAAATGATATAGCTGGTAAAATGGAATTAGGAAAGGTTGAACACAGTTCATTGTTGGAGTTT GGTGGAATCTCAATTTTAACACTTGGGTTTTAAATGATGGTCTCCTCGCGCTTGCTTTCATCTGTAGTACATAAAATAAA ATAAAGAACTTCCCCATGCAGCCATATAAAGTTTGTTAGATTCTTTATAAAATGTTTTAGAATCATGTTTAGGAGCATTT CATGCTGGTTAGTTCTCGATGAGCTTATTTTGTCAGTTGTGAAGGTTTTCCATAAGGTTCCTTGTCTTTGCTACTAAAAA ACTTTCTCCCTATTTTATTTTTTTCCTTGCTTGCTTATTGACTTGATGCCAAGCTGTTACTTTTCTCATTTGCTAACAAG ATTTTCTTTTCTTTTCAGCTGGCTATTGTTGATTAGTCAAACCTCAAAATTCCTGGACACTAATTACAGCATCTGTTCTG AAATCCTCTGCATGCAAGATGGGTGATGACCGCCAACATGAAAACGGTAGGCATAAGATGGAATACTACAGAGGAGCTCG TTCACCGGTAAATAGTATGCGCAGATTTAGTGTACTTTCTGTTTTTTATCTTACACTGCTGGATTTATTAATTGGATTGG TTTTAAAACGTTCAGTGGGATATGGATCACCAGCATCAAGTAAAGGAGCCAAATGCACTAGTTATGAACAAGAAACTTAG GTCTATTATGGCTGAAAGGCAAGCTGCCCTTCTAGAACTTGAGCTAGAGGCTGCTATATCAGAAAAGAATGAAGCCTTGG CTGCCCGAGATTTAGCCCTTCGGCAGAGGGATGAAGCACTTGCTCAGAGGGATAATGCCCTATTGCAACGAGACAATGCC CTTGCAGCCCTTCAAAATCGAAACAGTGCTGTCAACTTCCCTTTCAGTGGTGGAAGTCAACGTGGATCGAAGTGGATTCA CCATTCTCCAAACCATCTCTCTGACATAACAGAAACTTCATACATCACAAAGGATATGATAATAAGGGATGCATCACCAG TGACTATTGTAACTCCTGAAGATGTCAGATCTCATCAAGCTAAGAGAACGAAAGAGAGCAAGGTAATTAATTCCAAGTCA TCGAAGCCACCTTGCAAAGTAAAGAAATTGGGTGAGGATTTAAATAAGAAGGCTTCTTCTGAAGGGACAAAGTTCAGATC TGAATGGGATAGTCAGGATGTTGGCTTGAATTTGATTGCATTTGATGAAACTATCATGCCAGTCCCAGTTTGCACATGCA CCGGCATAGCACGACAGTGCTACAAATGGGGTAACGGCGGATGGCAGTCATCTTGTTGTACCACCACATTGTCGGTGTAT CCGCTACCACAGCTTCCGAACAAGCGCCACGCCCGCATAGGAGGGCGAAAGATGAGTGGAAGTGTCTTCACAAGACTTCT CAGTAAGTTGGCCTCAGAAGGCCATGATATATCTATACCATTGGATCTTAAGAACTACTGGGCTAGACATGGAACAAATC GCTACATTACCATCAAGTAGCTTGCTGACATTCATTTATATCAAGTTATGCATTCCAATTTGGACCACTATCACACCCAT GCCTTGATAAGCAGATATGCTTTAGTTTTGTGAACTCAGGTCATTTTCCAATAGAAGGCTGTTCCTCTTACTTATTTTCA GTTACTGGTATGGCTAGACCCAACTTTTACCTTGTAAATGGGATGGCTGTAAAGTTTATTGTATGTACATGTGGCTTTTT AGGTTGCCAGAAGTAGACCCCTTCCAATCCTGCATGTTTTCAGCTTTGTCTGTCCATTGTGAATCCATTATGCAGGCATT TTTATCACTTTTTCCTGAGATCTCGTTATTTTTCAGCATTTATTAAATTCAAGGCTTGGCTAAATTCAATGTGGGAAATT TACCACATCCTTTCCCGATCAAAAGTCTCCAGAGAAACTACCAGTTGAGCTAGAGCTGTTCAGCTTGGCTTTTAATTTGT TTCTAGCTTTAGGCAAACAAATAATACAATTTCTAGAGACACGGTCACAAAAACTCATGCCTTCAGATTCATTTTCTCTA CGGTCAGGGATACCCTGCATTGAGGCAATGTGAGTTGTCTGATCAAGATTAGTCAATTCATAGTTTTCATCAAGACCTAA CAATAGACATAAATTTAAAATCTTAGCTCACAGATCTTTG
CDS sequence (LotjaGi4g1v0420100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGATGACCGCCAACATGAAAACGGTAGGCATAAGATGGAATACTACAGAGGAGCTCGTTCACCGTGGGATATGGA TCACCAGCATCAAGTAAAGGAGCCAAATGCACTAGTTATGAACAAGAAACTTAGGTCTATTATGGCTGAAAGGCAAGCTG CCCTTCTAGAACTTGAGCTAGAGGCTGCTATATCAGAAAAGAATGAAGCCTTGGCTGCCCGAGATTTAGCCCTTCGGCAG AGGGATGAAGCACTTGCTCAGAGGGATAATGCCCTATTGCAACGAGACAATGCCCTTGCAGCCCTTCAAAATCGAAACAG TGCTGTCAACTTCCCTTTCAGTGGTGGAAGTCAACGTGGATCGAAGTGGATTCACCATTCTCCAAACCATCTCTCTGACA TAACAGAAACTTCATACATCACAAAGGATATGATAATAAGGGATGCATCACCAGTGACTATTGTAACTCCTGAAGATGTC AGATCTCATCAAGCTAAGAGAACGAAAGAGAGCAAGGTAATTAATTCCAAGTCATCGAAGCCACCTTGCAAAGTAAAGAA ATTGGGTGAGGATTTAAATAAGAAGGCTTCTTCTGAAGGGACAAAGTTCAGATCTGAATGGGATAGTCAGGATGTTGGCT TGAATTTGATTGCATTTGATGAAACTATCATGCCAGTCCCAGTTTGCACATGCACCGGCATAGCACGACAGTGCTACAAA TGGGGTAACGGCGGATGGCAGTCATCTTGTTGTACCACCACATTGTCGGTGTATCCGCTACCACAGCTTCCGAACAAGCG CCACGCCCGCATAGGAGGGCGAAAGATGAGTGGAAGTGTCTTCACAAGACTTCTCAGTAAGTTGGCCTCAGAAGGCCATG ATATATCTATACCATTGGATCTTAAGAACTACTGGGCTAGACATGGAACAAATCGCTACATTACCATCAAGTAG
Protein sequence (LotjaGi4g1v0420100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDDRQHENGRHKMEYYRGARSPWDMDHQHQVKEPNALVMNKKLRSIMAERQAALLELELEAAISEKNEALAARDLALRQ RDEALAQRDNALLQRDNALAALQNRNSAVNFPFSGGSQRGSKWIHHSPNHLSDITETSYITKDMIIRDASPVTIVTPEDV RSHQAKRTKESKVINSKSSKPPCKVKKLGEDLNKKASSEGTKFRSEWDSQDVGLNLIAFDETIMPVPVCTCTGIARQCYK WGNGGWQSSCCTTTLSVYPLPQLPNKRHARIGGRKMSGSVFTRLLSKLASEGHDISIPLDLKNYWARHGTNRYITIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 317 | 317 | 1.4E-154 | – | |
| SMART | 1 | 317 | 317 | 9.9E-134 | ||
| PANTHER | 1 | 317 | 317 | 1.4E-154 | ||
| Pfam | 9 | 317 | 309 | 1.2E-94 | ||
| Coils | 53 | 73 | 21 | - | – | |
| MobiDBLite | 159 | 181 | 23 | - | – | |
| MobiDBLite | 160 | 174 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0420100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…