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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0425000 |
Transcript ID | LotjaGi4g1v0425000.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Threonine dehydratase; TAIR: AT4G11640.1 serine racemase; Swiss-Prot: sp|Q2PGG3|SRR_ARATH Serine racemase; TrEMBL-Plants: tr|A0A1J7FZS3|A0A1J7FZS3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79981163..79984206) extracted from Lotus japonicus Gifu genome v1.2.
TATATATAAAAGTTGGTAAAATCGATCATTTGAAAGTGAGGAGGATAGCCACCACCAGCCAAAGCTGCAGCGTGCATTTC CATTCCAACCCAAGTAGTAAGTTCCCTTCTATTTATTTGTGTACCTTCTTTGATTTCAATTTGAGAAATCTTGTTTACTC CAAACCTGTTATTCATTTTATTCCAATTCATTATAAACCAATCTTTTTCTATTGACTTGCTGGGTGGCATTTGATATCTG TAAGGAAGAGGTTAATTTTAGTACAAATTCTAATTCTAACTAAGCCCTTAGCTTGTTATATATAGCATTTCCTATCCTGT TATCTATAGTAACTTACAACTTCTTGTAATTTAATTTCGAGAAGTGATATCGCATAATAATCATAGGATAAGGGCATAAC TAATTTTTTTTTATCTGTCTTCATTCACTTCCAAGACCTACTTAGATGGAAGAGGATAGCCAAATAACAAAGGGAAAGTA TGCTGCTGATATTTCCTCCATTAAGGAAGCCCATGATCGAATAAAATCGCAGGTTCTAATAACTCCAGTTCTCTCCTCCG CCTCTCTGAATGCTATATCAGGAAGGCAGCTGTACTTAAAGTGTGAATGTTTCCAAAAAGGGTGAGAAATGAATTTGCCA TGAATTGTTACTTTTCATTTTTTTATTGGTGTACTTTACATTCCATCACACTCTTGTAATACACTTCCTTCTGTATTCTA TGGCTTTCAGTGGAGCTTTTAAATTTAGAGGTGCCTGCAATGCTGTTTTCTCTCTCAACGACGAAGATGCTTCCAAAGGG GTTATTACACACAGCAGGTATGCTATGTGAAGTAATTCTAGAAGTTTGTTGTTTTAATCAGATTCTGTAAATTTGAAGCT CTCCTGATTGTGTCCTACAAAACCAGTGGAAACCATGCTGCAGCGTTGGCTTTGGCAGCAAAACTACGCGGTATCCCTGC ATATATAGTTATTCCAAAAAATGCTCCAACTTGCAAAGTTGAGAATGTAAAGCGGTACGGTGGTCAGGTTATCTGGTCTG ATGCCTCTATGCAATCAAGGGAGGATACTGCAAAGAAAGTGTTGCAAGAAACTGGTGCTATCCTTATACATCCATATAAT GATGGACGCATATTGAGGTCCAATGTTGAATACTTTATCATTGTTTAATTTGTTTCTGACTTAAATGCCCTGTCATTAAA CAGTTTTAGGGGATGATAATCATTTGGTAGACTCATTCTTTTCATAGCAATTTTACCAATCAGATCATGTAGTGTATAAG TGGTGCTTGAAGCTTACCAATCATACCATGTAGTTGTTCTTCTTATTCTTCTAACTGATTGCTGAAGTGCAAGATTTATG ACACTTCAAACTCAAAAACATGACATATAACATAGGCATATTGTTAGATTTGATCCCTAGCTATAATAGATAGTAATGAT AGCCTAGTAGTTATGGTGATTTAAGAGCTAAAAACGAATTTGCTTTATGTATTGGTTATTTTATTGTTACATACTTATGC TCTGCAAGACCTTTCATATGGTCGTTTGCGCATAAAAGTATAAAAGCTCGTAAGCTATTAATAAAACACTTGTAACAGTT TATACAGAAGTTTGTAATTTCCTCTCTTCACTTTAAGTCTGTTGCTTGCTTTTTCTGCATTTAATCTATTTTCTTAACAC ATACTATAGGAATTGGTGACTTGCACACAGTTGCACTGACACATGTGATTGTTCTTGCAGTGGCCAGGGTACCATATCAT TGGAGTTTCTGGAACAAGTCCCACATATCGATACGCTAGTGGTACCTATAAGTGGTTTGTTCACCTTTTTCTGTCAAGCT GTGTCAGCCAAAATGTTCAAAAGAGTGCATTTGTTTCAGTATCGGCTTCTTGATTTTCCAACAAATGAAAACTGCAGGTG GTGGTTTGATATCAGGAGTAGCATTGGCTGCCAAGTCCATCAACCCGGCTATTCGGATTTTGGCTGCTGAACCTAAAGGG GCTGATGATGCAGCACAATCTAAGGCAGCTGGGAGGATAATAACATTGCCTGAGACCAATACTATAGCTGATGGGCTCAG AGCATTTCTTGGAGATTTCACATGGTAAAAACAAATCTTTAGTAATCAAGATTATGAACTAAAAATAAAGTTGCTGCTCT CCCTTTTGTTCTCTTGGTTTTGTTATACTGTGTTAATGAATACATACTTTCTTTTTTCCCTTTTTATCATTCCCTTGTTC AACAAAATCTGGTTTTTTTTCGAGTACAACGACGTCAGGTGATCCACGTAGCCGACCTCATTTACTGGATAAGACTTTTG TTGTTGTTGTTTAACATTCCCTTGTCTCATTGATTTTTACGCATCTGTTAATTTGTTGAATTTTCTTACACGCCATGTCA TAATGGAGCAGGCCTGTGGTCCGAGATCTTGTTGAGGACATAATAACTGTAGACGACAGTGAAATCATAAAAGCCATGAA ACTGTGTTTTGAAATTCTTAAGGTTGTTGTGGAACCAAGTGGAGCAATTGGCCTTGCTGCTGTTCTATCCGATACCTTCC AGAAAAATCCTGCATGGAAGGATTGCAACCATATTGGAATTGTAGTTTCAGGAGGCAATGTTGATCTGGCCGTGCTTTGG GATTCTTTTAACAAAGCAAAATGACTTTTGTTTTTGCTTATGTGAACCTTCATTGCTTGGATATGTAAGTGTTATTCCAT TGCTGATGTAATAATTTTATGTGGTTGAGGTTATTTCAATGCTAGTTATTAACTTGTTGGATTAAAGTTCTTATTTGTGA AGAATCATATAAACAATTTTTCATCGACAAGGTGTTGGTCTAATGGTAAGCAAACTAGACTTCTGTAAGGGTGATGACAC AAGTTCGAACCCCGTAAAAATCATTTGTTGGGACTTGGGAGTGTCACACTTTCCGAATGGGAAACTCATCAAAGACTATA TAAACAATTCTTGTCATTAAATAATAAAGCTGATAATAAACATAGATTGGATATCCCTTACAGTCAACTAATCTTATGTA CACA
CDS sequence (LotjaGi4g1v0425000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAGGATAGCCAAATAACAAAGGGAAAGTATGCTGCTGATATTTCCTCCATTAAGGAAGCCCATGATCGAATAAA ATCGCAGGTTCTAATAACTCCAGTTCTCTCCTCCGCCTCTCTGAATGCTATATCAGGAAGGCAGCTGTACTTAAAGTGTG AATGTTTCCAAAAAGGTGGAGCTTTTAAATTTAGAGGTGCCTGCAATGCTGTTTTCTCTCTCAACGACGAAGATGCTTCC AAAGGGGTTATTACACACAGCAGTGGAAACCATGCTGCAGCGTTGGCTTTGGCAGCAAAACTACGCGGTATCCCTGCATA TATAGTTATTCCAAAAAATGCTCCAACTTGCAAAGTTGAGAATGTAAAGCGGTACGGTGGTCAGGTTATCTGGTCTGATG CCTCTATGCAATCAAGGGAGGATACTGCAAAGAAAGTGTTGCAAGAAACTGGTGCTATCCTTATACATCCATATAATGAT GGACGCATATTGAGTGGCCAGGGTACCATATCATTGGAGTTTCTGGAACAAGTCCCACATATCGATACGCTAGTGGTACC TATAAGTGGTGGTGGTTTGATATCAGGAGTAGCATTGGCTGCCAAGTCCATCAACCCGGCTATTCGGATTTTGGCTGCTG AACCTAAAGGGGCTGATGATGCAGCACAATCTAAGGCAGCTGGGAGGATAATAACATTGCCTGAGACCAATACTATAGCT GATGGGCTCAGAGCATTTCTTGGAGATTTCACATGGCCTGTGGTCCGAGATCTTGTTGAGGACATAATAACTGTAGACGA CAGTGAAATCATAAAAGCCATGAAACTGTGTTTTGAAATTCTTAAGGTTGTTGTGGAACCAAGTGGAGCAATTGGCCTTG CTGCTGTTCTATCCGATACCTTCCAGAAAAATCCTGCATGGAAGGATTGCAACCATATTGGAATTGTAGTTTCAGGAGGC AATGTTGATCTGGCCGTGCTTTGGGATTCTTTTAACAAAGCAAAATGA
Protein sequence (LotjaGi4g1v0425000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEDSQITKGKYAADISSIKEAHDRIKSQVLITPVLSSASLNAISGRQLYLKCECFQKGGAFKFRGACNAVFSLNDEDAS KGVITHSSGNHAAALALAAKLRGIPAYIVIPKNAPTCKVENVKRYGGQVIWSDASMQSREDTAKKVLQETGAILIHPYND GRILSGQGTISLEFLEQVPHIDTLVVPISGGGLISGVALAAKSINPAIRILAAEPKGADDAAQSKAAGRIITLPETNTIA DGLRAFLGDFTWPVVRDLVEDIITVDDSEIIKAMKLCFEILKVVVEPSGAIGLAAVLSDTFQKNPAWKDCNHIGIVVSGG NVDLAVLWDSFNKAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 9 | 331 | 323 | 7.6E-156 | – | |
CDD | 16 | 323 | 308 | 4.15954E-134 | – | |
SUPERFAMILY | 16 | 326 | 311 | 1.28E-88 | ||
Gene3D | 25 | 323 | 299 | 3.8E-117 | ||
Pfam | 31 | 303 | 273 | 5.4E-74 | ||
ProSitePatterns | 54 | 67 | 14 | - | ||
Gene3D | 62 | 158 | 97 | 3.8E-117 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi4g1v0425000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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