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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0451100 |
| Transcript ID | LotjaGi4g1v0451100.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial; TAIR: AT4G13360.1 ATP-dependent caseinolytic (Clp) protease/crotonase family protein; Swiss-Prot: sp|Q9T0K7|HIBC6_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial; TrEMBL-Plants: tr|G7L900|G7L900_MEDTR 3-hydroxyisobutyryl-CoA hydrolase-like protein; Found in the gene: LotjaGi4g1v0451100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82321402..82323725) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTAGGTCTTCACGGCTGAGTATTCTTTGATATGCAAAATTGCTGAGTACAAGAAGCCATATATAAGCTTCATGGATG GAATTACAATGGGTTTTGGAATTGGCTTATCTGGTCATGGCCGCTATCGTATCATAACAGAGGTAAGCTCAACATGTAAT TAGTTGCCTCGTTTTATTATATATATTTAATGAACTCATAAATAGCCATTCTAGATCTTGTTTATGACTTTCTTTTACTT TAACATATTTCCAGAGAACTGTTCTTGCAATGCCCGAAAATGGAATTGGCTTGTTCCCAGATGTAGGTTTTGCTTATATC GCGGCTCAAAGTCCAGGAGAAGGATCTGTTGGTATTTTTCTTAATATAACACAGCGTGTGTAGTTTTTATTGCTTTTATT AGACGTGCTGATAAGGATTTAAGGGTTTTTAAAGTACAAACCCTTCATGTTCTTCTTTTTGTGCATTATTCTGTCATAAT TTGCCTGATGAATACATGTGTGCTGCACTACTGAAGCATCTAGATGTGGTCTCAGCTCCTGTTACACAGCTTATTAATTT TCTTAAATATGGTTTGAAGGTTCTTCGACTTCTTTTCTATGGAATATCTGAATTCCGATATATTGAAATTTTTACTGATT GCAGGTGCTTATCTTGGATTGACTGGAAAGAGGATTTCTACTCCTTCAGATGCAATATATGTTGGCCTTGGAACACATTA TGTGACATCTGGAAAGTTAGGTTTATTCAAGGAGGCTCTTTTGGCAACTAACTTGTATGTCAGCTTGAACTTTTTATTCG TTATTGAGACTCTTACTCAAGATATCTCCCTTTAACCTCATCATTTTGATTGAGTTGGACCCCTGAAATGAAAATAATAC ATTGACTTGTTTGTGTAGACACAAGTCATTTACTTTCTGCAGCATGCATTTCACTCATGGTCATCTTGGATGTTTGTTGA AATAATCTATCATAGTATTTACTTTGTTAAGAAGTACATAATTGCAATGAGGGCATACATAATTATCTAACAAACTCATT GATTATTCAGTTCCCAGGACCCCCATCAGGACATCAAAGTACTCTTAGCAAGATATGAGTCCAACCCAGAGTCTGAGGCA CAATTGAAATTGCTTTTACCCGAGATAATTTCTTCATTTGGAGGAAATAAATCTGTTACTAAGACTGTTGATGAGCTTAA AAAACACCAGTCAAGTGCTGACTCTAACGGTATACTTATTGATCTATTATTTATTTACATTATTCTGAAATGTCCAGATA CAGCTGTTGTTGGCTTGTTTCGTATATCAAATATTTATGCTTGAAATTGTATGTTTGAATTTGTTGTAAATTGCTTGTCT AGTCGTTGTAATTTTCTTGTATTTTTCTATTTCTAGTTGTGGAGTGGGCTAATGAAGCTCTCCAAGGCCTTGGAAAAGGT GCTCCTTTTTCCCTTTTCTTGACCAATAAGCACTTCTCTGCAGTTGCCTCCGCAGTAGCGAAAAATGACGTTGAATTATC CACAGTAAGCACTTTTTTTGGGGGGATTGGGTGGGTTAAGGTTTCCATGTTTCAAAATTAATTCAATGTCTATTCTCTAC ATTTGAAATAATCCAGCTTAATGCCGTAATGAAAACTGAGTATCGGATTGCCTTGAGGTCTTCACTGCGACATGATTTTG CAGAAGGTGTCCGAGCAGTATTGGTTGACAAGGATCAGGTTTTCTCTTTTTCTCATGATTTTTATACTTTTTATCTGGTA GTCAAACTTCAATTCTAGTTTTCCCTAAACTAGGAAATGATAGATACAATTGATATGTCTGCAGAAGGCTAGTGTATGTA TTACTCTATTACTAATACTAATAGTTAATACTATCTGTTTTACCTTGGGGGGGGGGGGACTTATTGTCGGTGAAGTGAAA TCATGTGAACATATGTTTCTTCTGTGTTTATACTTTATACTTATACTTCCTTTCTTCCCTAGCTTCACAAATACTTGAAT CTTCCGTTGAAAGTACACGTGTCTGATTTATCTGCATATGAATCTACAGTTTAAAGTATTTAAATTTGGTTCTGTCTTCA TATAGTTCCTTCTGTGTGCTATCTTTCTAGTGCTATGAATCTTTTATATGTTCTCTTTAATCCATGAAGTTATTTATCCT TCAATATTTGGTAAATTTTGTTTCCTGCTTGAGTAATAGATTCAATTACTATTCTCCTGCAGAACCCTAAGTGGAAACCA TCAAGATTGGAAGAAGTTGATCCAGGTGAGGTGGAAGAAGTTCTTAAACCACTAGGACCCCAGGTTGGGGAGTTGTCTGT GTAA
CDS sequence (LotjaGi4g1v0451100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGAATTACAATGGGTTTTGGAATTGGCTTATCTGGTCATGGCCGCTATCGTATCATAACAGAGAGAACTGTTCT TGCAATGCCCGAAAATGGAATTGGCTTGTTCCCAGATGTAGGTTTTGCTTATATCGCGGCTCAAAGTCCAGGAGAAGGAT CTGTTGGTGCTTATCTTGGATTGACTGGAAAGAGGATTTCTACTCCTTCAGATGCAATATATGTTGGCCTTGGAACACAT TATGTGACATCTGGAAAGTTAGGTTTATTCAAGGAGGCTCTTTTGGCAACTAACTTTTCCCAGGACCCCCATCAGGACAT CAAAGTACTCTTAGCAAGATATGAGTCCAACCCAGAGTCTGAGGCACAATTGAAATTGCTTTTACCCGAGATAATTTCTT CATTTGGAGGAAATAAATCTGTTACTAAGACTGTTGATGAGCTTAAAAAACACCAGTCAAGTGCTGACTCTAACGTTGTG GAGTGGGCTAATGAAGCTCTCCAAGGCCTTGGAAAAGGTGCTCCTTTTTCCCTTTTCTTGACCAATAAGCACTTCTCTGC AGTTGCCTCCGCAGTAGCGAAAAATGACGTTGAATTATCCACACTTAATGCCGTAATGAAAACTGAGTATCGGATTGCCT TGAGGTCTTCACTGCGACATGATTTTGCAGAAGGTGTCCGAGCAGTATTGGTTGACAAGGATCAGAACCCTAAGTGGAAA CCATCAAGATTGGAAGAAGTTGATCCAGGTGAGGTGGAAGAAGTTCTTAAACCACTAGGACCCCAGGTTGGGGAGTTGTC TGTGTAA
Protein sequence (LotjaGi4g1v0451100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGITMGFGIGLSGHGRYRIITERTVLAMPENGIGLFPDVGFAYIAAQSPGEGSVGAYLGLTGKRISTPSDAIYVGLGTH YVTSGKLGLFKEALLATNFSQDPHQDIKVLLARYESNPESEAQLKLLLPEIISSFGGNKSVTKTVDELKKHQSSADSNVV EWANEALQGLGKGAPFSLFLTNKHFSAVASAVAKNDVELSTLNAVMKTEYRIALRSSLRHDFAEGVRAVLVDKDQNPKWK PSRLEEVDPGEVEEVLKPLGPQVGELSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 266 | 266 | 1.0E-65 | – | |
| PANTHER | 1 | 268 | 268 | 8.9E-147 | – | |
| CDD | 1 | 87 | 87 | 4.80521E-14 | – | |
| PANTHER | 1 | 268 | 268 | 8.9E-147 | – | |
| SUPERFAMILY | 1 | 242 | 242 | 9.72E-20 | ||
| Pfam | 1 | 255 | 255 | 7.6E-69 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | 3-hydroxyisobutyryl-CoA hydrolase activity | Catalysis of the reaction: 3-hydroxy-2-methylpropanoyl-CoA + H2O = CoA + 3-hydroxy-2-methylpropanoate. |
Expression pattern of LotjaGi4g1v0451100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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