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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029045
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 112 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 6.188s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0063919.1
n.a. PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Glycine max] gi|356563366|ref|XP_003549935.1| chr0 21844267 21848014 -
3 domain predictions
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Lj0g3v0063919.2
n.a. PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Glycine max] gi|356563366|ref|XP_003549935.1| chr0 21844267 21848014 -
3 domain predictions
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Lj0g3v0171639.1
n.a. PREDICTED: protease 4-like [Glycine max] gi|356562658|ref|XP_003549586.1| chr0 82271999 82279241 +
3 domain predictions
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Lj0g3v0228219.1
n.a. PREDICTED: carboxyl-terminal-processing protease-like [Glycine max] gi|356534629|ref|XP_003535855.1| chr0 117954083 117959780 +
3 domain predictions
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Lj0g3v0251079.1
n.a. PREDICTED: carboxyl-terminal-processing protease-like [Glycine max] gi|356574722|ref|XP_003555494.1| chr0 130199098 130206954 -
3 domain predictions
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Lj0g3v0251079.2
n.a. PREDICTED: carboxyl-terminal-processing protease-like [Glycine max] gi|356574722|ref|XP_003555494.1| chr0 130201912 130206918 -
2 domain predictions
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Lj0g3v0256879.2
n.a. alpha-carboxyltransferase 2 [Arachis hypogaea] gi|226425243|gb|ACO53621.1| chr0 133347138 133351924 -
3 domain predictions
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Lj0g3v0262349.1
n.a. PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like [Cicer arietinum] gi|502121748|ref|XP_004497428.1| chr0 135978169 135979238 -
3 domain predictions
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Lj0g3v0268829.1
n.a. PREDICTED: acetyl-CoA carboxylase 1-like [Glycine max] gi|356508126|ref|XP_003522811.1| chr0 139230600 139243243 +
3 domain predictions
 –
Lj0g3v0268829.2
n.a. PREDICTED: acetyl-CoA carboxylase 1-like [Cicer arietinum] gi|502130304|ref|XP_004500605.1| chr0 139239986 139243243 +
3 domain predictions
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Lj0g3v0282229.1
n.a. PREDICTED: carnitinyl-CoA dehydratase-like [Cicer arietinum] gi|502122625|ref|XP_004497837.1| chr0 146327793 146328907 -
3 domain predictions
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Lj0g3v0314649.1
n.a. PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Cicer arietinum] gi|502154602|ref|XP_004509757.1| chr0 164252181 164257030 +
3 domain predictions
 –
Lj0g3v0314649.2
n.a. PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Cicer arietinum] gi|502154602|ref|XP_004509757.1| chr0 164252181 164257030 +
3 domain predictions
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Lj0g3v0340609.1
n.a. Peroxisomal fatty acid beta-oxidation multifunctional protein [Medicago truncatula] gi|357500631|ref|XP_003620604.1| chr0 178422978 178427460 +
3 domain predictions
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Lj0g3v0351029.1
n.a. PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5-like [Glycine max] gi|356526975|ref|XP_003532090.1| chr0 184583190 184587125 +
3 domain predictions
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Lj1g3v0579770.1
n.a. PREDICTED: protease 4-like [Cicer arietinum] gi|502086999|ref|XP_004488395.1| chr1 7265849 7280379 -
3 domain predictions
 –
Lj1g3v2628750.3
n.a. PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Fragaria vesca subsp]. vesca] gi|470145526|ref|XP_004308388.1| chr1 30757264 30763647 -
3 domain predictions
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Lj1g3v3218110.1
n.a. PREDICTED: carnitinyl-CoA dehydratase-like [Glycine max] gi|356568988|ref|XP_003552689.1| chr1 36541613 36542748 -
3 domain predictions
 –
Lj1g3v3244500.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic-like [Glycine max] gi|356499630|ref|XP_003518640.1| chr1 36675368 36676122 -
3 domain predictions
 –
Lj1g3v3244500.2
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic-like [Glycine max] gi|356499630|ref|XP_003518640.1| chr1 36675368 36679932 -
3 domain predictions
 –
Lj1g3v4919820.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-like [Glycine max] gi|356572984|ref|XP_003554645.1| chr1 59730156 59734140 -
3 domain predictions
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Lj2g3v1549610.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Glycine max] gi|356531505|ref|XP_003534318.1| chr2 24349790 24354648 -
3 domain predictions
 –
Lj2g3v1549620.1
n.a. ATP-dependent Clp protease proteolytic subunit [Medicago truncatula] gi|357484629|ref|XP_003612602.1| chr2 24350516 24354680 -
3 domain predictions
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Lj2g3v3054260.1
n.a. PREDICTED: 3-hydroxybutyryl-CoA dehydratase-like [Cicer arietinum] gi|502150828|ref|XP_004508144.1| chr2 39251137 39252954 -
3 domain predictions
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Lj3g3v0509640.1
n.a. 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula] gi|357512815|ref|XP_003626696.1| chr3 5833233 5843625 +
3 domain predictions
 –
Lj3g3v3189750.1
n.a. PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Cicer arietinum] gi|502155817|ref|XP_004510202.1| chr3 39466160 39473086 -
3 domain predictions
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Lj3g3v3338450.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like [Glycine max] gi|356538797|ref|XP_003537887.1| chr3 40995809 41005430 -
3 domain predictions
 –
Lj3g3v3338450.2
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic-like [Glycine max] gi|356538797|ref|XP_003537887.1| chr3 41001184 41004032 -
3 domain predictions
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Lj3g3v3513730.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like [Vitis vinifera] gi|225423749|ref|XP_002277069.1| chr3 42855662 42857660 -
3 domain predictions
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Lj3g3v3513740.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like isoform 1 [Glycine max] gi|356538559|ref|XP_003537770.1| chr3 42856062 42857660 -
3 domain predictions
 –
Lj3g3v3523880.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like isoform 1 [Glycine max] gi|356538559|ref|XP_003537770.1| chr3 42935422 42936798 -
3 domain predictions
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Lj4g3v0619950.1
n.a. 3-methylcrotonyl-CoA carboxylase [Medicago truncatula] gi|357475341|ref|XP_003607956.1| chr4 9372184 9377162 +
3 domain predictions
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Lj4g3v1089340.1
n.a. Fatty acid oxidation complex subunit alpha [Medicago truncatula] gi|357446579|ref|XP_003593565.1| chr4 15852531 15852743 +
3 domain predictions
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Lj4g3v1213500.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Glycine max] gi|356563393|ref|XP_003549948.1| chr4 18006720 18013397 +
3 domain predictions
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Lj4g3v1291650.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic-like [Glycine max] gi|356514168|ref|XP_003525778.1| chr4 19117587 19121811 +
3 domain predictions
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Lj4g3v2310310.1
n.a. PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein MFP2-like [Cicer arietinum] gi|502150946|ref|XP_004508202.1| chr4 32136413 32145373 +
3 domain predictions
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Lj4g3v2631020.1
n.a. Carboxyl-terminal-processing protease [Medicago truncatula] gi|357519225|ref|XP_003629901.1| chr4 35913233 35919419 -
3 domain predictions
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Lj4g3v3093990.1
n.a. PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial-like isoform X1 [Cicer arietinum] gi|502138482|ref|XP_004503423.1| chr4 41057735 41063436 +
3 domain predictions
 –
Lj5g3v0495890.1
n.a. PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial-like [Cicer arietinum] gi|502125129|ref|XP_004498810.1| chr5 4907451 4914870 -
3 domain predictions
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Lj5g3v1598380.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like isoform 1 [Glycine max] gi|356534756|ref|XP_003535918.1| chr5 22969271 22972862 +
3 domain predictions
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Lj5g3v2099600.1
n.a. PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic-like [Glycine max] gi|356575728|ref|XP_003555989.1| chr5 30080512 30084697 -
3 domain predictions
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Lj6g3v0932380.1
n.a. PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5-like isoform X1 [Cicer arietinum] gi|502128478|ref|XP_004499976.1| chr6 10275882 10279079 -
3 domain predictions
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Lj6g3v1465030.1
n.a. PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein MFP2-like [Cicer arietinum] gi|502085090|ref|XP_004487834.1| chr6 17207311 17214752 -
3 domain predictions
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Lj6g3v2045710.1
n.a. PREDICTED: carnitinyl-CoA dehydratase-like [Cicer arietinum] gi|502077881|ref|XP_004485774.1| chr6 24291552 24292540 -
3 domain predictions
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Ljchlorog3v0000580.1
n.a. carboxytransferase beta subunit [Lotus japonicus] gi|13518447|ref|NP_084807.1| chloro 56842 58329 +
3 domain predictions
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Ljchlorog3v0010700.1
n.a. ATP-dependent Clp protease proteolytic subunit [Lotus japonicus] gi|13518463|ref|NP_084822.1| chloro 67283 67787 -
3 domain predictions
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Ljchlorog3v0010710.1
n.a. ATP-dependent Clp protease proteolytic subunit [Lotus japonicus] gi|13518463|ref|NP_084822.1| chloro 67734 69572 -
3 domain predictions
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LotjaGi1g1v0208400.1
n.a. signal peptide peptidase; TAIR: AT1G73990.1 signal peptide peptidase; Swiss-Prot: sp|Q9C9C0|SPPA1_ARATH Serine protease SPPA, chloroplastic; TrEMBL-Plants: tr|V7AXS8|V7AXS8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0208400 LjG1.1_chr1 45730071 45748319 +
2 domain predictions
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LotjaGi1g1v0208400.2
n.a. signal peptide peptidase; TAIR: AT1G73990.1 signal peptide peptidase; Swiss-Prot: sp|Q9C9C0|SPPA1_ARATH Serine protease SPPA, chloroplastic; TrEMBL-Plants: tr|A0A151RJH4|A0A151RJH4_CAJCA Protease 4 isogeny; Found in the gene: LotjaGi1g1v0208400 LjG1.1_chr1 45730330 45747384 +
2 domain predictions
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LotjaGi1g1v0208400.3
n.a. signal peptide peptidase; TAIR: AT1G73990.1 signal peptide peptidase; Swiss-Prot: sp|Q9C9C0|SPPA1_ARATH Serine protease SPPA, chloroplastic; TrEMBL-Plants: tr|V7AXS8|V7AXS8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0208400 LjG1.1_chr1 45741388 45747247 +
2 domain predictions
 –