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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0465000 |
| Transcript ID | LotjaGi4g1v0465000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein; TAIR: AT3G17930.1 transmembrane protein; Swiss-Prot: sp|Q6CLM9|COA3_KLULA Cytochrome c oxidase assembly factor 3, mitochondrial; TrEMBL-Plants: tr|I3S8Z1|I3S8Z1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0465000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83502551..83506463) extracted from Lotus japonicus Gifu genome v1.2.
AACGAAGGCAAGCCACGAGTAATGAAGAGAAACGTGTTGAGGATATATATAGACATAAAAGAACCTCATCTTCAGACTTG AATCATCCTTCCACTCCACAGCACAGGAAGGAAGGATGGCTTATGTATTTGCTAATTGCAGTTTCTCGATTTCCTATTTT GGTTTACCTCTCTTGCAACCGGGAGTGAGAGATTCAAACCGAGGTAGGTACTCAACTAGTTTTAATTTGATACACCCTTG TTTGTTAATTTTGGCTTGATTCTTGTTCGCATATAAATAAATGCCCATGCCCATGCCCATGCCCAGGAACACTCACTCCC CTATGCTTAAATGGTAGGACGGGATTTAGTCGCAGCTTCTCCAGCATCCCTAGAACAAGAACAAGAACAAGAACAAGAAC TAGAACTAGAACTAGAACTAGAAGTACTACTTCTTCAAACTCTAGTGGCACTCCGGATGACCCCTCTGAGTCTGATCAGA CTAAGGCACGTATATACTAATCTCATGACTCAGAGTTAATATTTTGATTAACAAACTAGTGCATTCTTAATCTTACCCCA ATATATGCTAATTAATTTCTTCTTGGTGTCCATGTTTTGGTTGTCTGATTTATTACTCAAAATTGTTCTTCTACCCTCAT GCTTGCACTCAAATTCTCTTTCCTTTACACTACATAATCATAACATTAATAAGACACCTGATGGTTATGCTTTTTTGGAT GTTATAGAAGACACCATTTGGATATACAAGGAAAGATGTCATATTAATTGGACTTGGAGTTACTTTCCTTGGCATTGGCT TAAAAACTGGATTAGAGGTAAGGTACCCTTCTTTCTGTTCTCTCTTATGGAATACGTTTCACTTTCCATGTCGTGCCATT TAGCTTATGCATATGCTTATCCTATTCATAAATGAGAAAGTACATATTCTCACTGCCTTGTCAATAAAACAACATTGTCA TTGAACCTTGTCAATTCTTAGATACTAAATATAGGCACCTATGCTACAGGATTAAGATTAATCATGCAACTGTTCTTGGA TTAATTTTGCAGTATGTTGGAGTTGATCCACTACAAGCAGGAAATGTAGTTCAGCTGGTGCTGGTTTTGGGCCTCACAGT TGGATGGATCTCAACATATATCTTTAGAGTTTCAAACAAGGAAATGACATATGCACAACAACTGCGTGACTACGAAAGCA AAGTGATGGAGGTACAATAATATTAACAAAGTTGCCTTTCTGTTGTGTTAAACATGGTGAAGTGATTGTTTTATATTTAT TTCCCACAAGAATTGCAAATGCTTGTCATGTGTTGATTATGATATTCTTGGTCAAAAAATTTGTACTTTGCTAAATCTTT TTCTTCGTCTTCATCAACTTTTCTTTGCCTTGTCGTTTATCGTAGAACATTGTATGAAGCAGGTACTTATCAAACATCTG CTCTCTATTTGCATTGTTTGTGAACTTATGACACTACTGCACCTTTTCACTATTGGGGAAACTGTTTTTATATGCTGAGG GCTTAAGGGTGTGTTTGTAAAATAGTTGCAAAAGCGTAAATCAATGTTTAATCAATGAGAATTTTCTTCCTTTCGCATAA AGCACATTTGAAAGAGAGATTTCCATTTCCCAGTCATGGAATGTCACAAAAGGAATATGAATGGAAAATTAAACATGCTC TAAAATGAGTTGGAATGTCGGATAGATGCTAGACTGATTTGAAAATTTAATGTTATTCTTTGACATGTCAAGTGAATAAG TTGATTGATAAATACCCGTGATTGTTATTGAAAAATCTCAGATTGGGAGCTGCTATGCTCCATATGATAAAATATTACTT TTACTTTCTCTTCGGTTAAGAGACGAGTCTGAGACACATCCAGATACATCAAGAACACCACATTTTACTTTTTACCTCCA TTGGATCTCTGACTGTGTGTGCTACAGAGCTGGTCCAAAGCCTGAAAAAAAAAAAGAGTAAAACCCTGTTAGTTTTGACA GCGAACTTAGAACTTTGTCAAATCCCAAATGACCTGGATCTTTTTCAGCATTCAAATATACCAAAACCAAACTAATGAAT GCATTGTAGTAAAAAAATTCTTTCCAGAACATTGAAGTTTAATACATTGGTCTGCACTCTGCAGCATGTTGTGTCTTCAC ACTGTTTCTCAATATAACATCCATATAATAATGTAACTCATTGATTCTGCAGAAACGTTTAGAGTCCCTAACAGAAGCAG AACTACAAGCACTGCTTCAAGAAGTGGAGGAAGAGAAGAGTCGCTAGCTAATGGTGCTGTTAATTGGAGCAACTTGTTTG TATATATACACTGAAGTTTTACTGCAGTAATTTAAACAGAAATTTCAATCTATATGGAACTAGTTAAGGAAGGTTTTAGC TTTGTTTTCTTCATTTCACTCACAGTCACAGACAAAAGGGTGAGACTTCAAATCTTTAGCGTTCGCAAAAAAATCCAGAT GGAACACAACTCTGTAAGGTAAGATGATAATGCTTATATATTCACGTAATTTAGCGACTTTTACTTAGTGTCATTAACTA GTGCACCTCATGCAATGATGGAGGTGCCTGTTGAAGGTAAGGTTGGAACTTGGCCTTGAGCCATTTCTCTCATATCCTGA GATTTTAACAAGGCTACATTTTAGGTGTGTTTGGTTGACAAAACTTGACAAAGAGTGAACAAAACTCACACACTTTGTAA TTTGGTACCCTACTCCTAGAGAAAAACAGATAGCAGGTCCATTAGGTACACACCAACAACTCAATGGGACCACTTGAATT CAGATGCAGTTGTGAGTTTTAGCAGTATGTAATCTGCACTGCTCTTTATTTGAAGCAATATTTTGCAAGATAAATAAATT GAAGTTAATTCCATGCTGCTCTGAATTTGAATGTTTCCTTTCTTCCATTTTTTGTACATTGTTCCCCACTTTGGATAACA ATATTTTGAATAGAACTCATAACTGAGGAATGTGTCTTCTTAAGTGAACAAATAAATAAAGCTCTTTGTGACCCTTGCTA TGGTATTGAGTGCTAGTACCAATTAAGGAGCAAGTGTGAAGAAGTGCAAGAGGTAGCAATTATTGTGTGTGCTGAGATGA AGCTTACTATTAGATGTTTCTTTATCATTGCGCTATGAGAAAATGACTGCATTATTGGGGTTATATAGCATAACCATTCA CGTGCAGATGCAGCCTCTGTTTCTCTTTTGTATACAGGACAGAGCCATCCACGTGCAGGTTTGAGGGTACCTTTGATCCT TAAACAAACAAAAATGGAAAATTGCACTACAAATTCAGCTCATTCTAAAGTCCAAATCTAGTCAAACATTACAGTAGCAT GCTATATTGAATTTCGTTCAAAGTTAAAATTCAGCCCCTTACTTCTTTCTTCTTAAATTTTCTTATGCCACTTAAGCTGA GTGAGCATCAAATTTTTCTCAAGTTTGGTCCTGCAAACTGGTGATGAATTAAATAAGATTGTTGAATGCAAAGTTGATCT GGCTCCGGACTGATAGTTCTCCGCTGTATTGATTATTTATGCAAATGGAAGACCCAATCAAACTGTTGAGATACTATCTT CATTGAATGAACGCAAGAAATAAATTAATGATCCGTGCCTGTGCTGTATGGTATATGTGTATATTGGGTTCGTAAGAGAA TCTTGGTATTTTTATGGATACAAATGCCACATAAAATATAAAGTTTTGCTCCGATACACATGTTGGTTGAGTCTCACATT AAAAAGATTATTATTTTTATGTAAGATATTGGTTAGGAAGGAGGGTGACTTGGTTTAATTATTGGTGTAAGGTACTTGCG TTGGAGATGTTATAACTAGGGTTCACCATTTGATTTGATTGGAAGATTGAAGAGACAGGTGAGTGAAATGAAA
CDS sequence (LotjaGi4g1v0465000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTATGTATTTGCTAATTGCAGTTTCTCGATTTCCTATTTTGGTTTACCTCTCTTGCAACCGGGAGTGAGAGATTC AAACCGAGGAACACTCACTCCCCTATGCTTAAATGGTAGGACGGGATTTAGTCGCAGCTTCTCCAGCATCCCTAGAACAA GAACAAGAACAAGAACAAGAACTAGAACTAGAACTAGAACTAGAAGTACTACTTCTTCAAACTCTAGTGGCACTCCGGAT GACCCCTCTGAGTCTGATCAGACTAAGAAGACACCATTTGGATATACAAGGAAAGATGTCATATTAATTGGACTTGGAGT TACTTTCCTTGGCATTGGCTTAAAAACTGGATTAGAGTATGTTGGAGTTGATCCACTACAAGCAGGAAATGTAGTTCAGC TGGTGCTGGTTTTGGGCCTCACAGTTGGATGGATCTCAACATATATCTTTAGAGTTTCAAACAAGGAAATGACATATGCA CAACAACTGCGTGACTACGAAAGCAAAGTGATGGAGAAACGTTTAGAGTCCCTAACAGAAGCAGAACTACAAGCACTGCT TCAAGAAGTGGAGGAAGAGAAGAGTCGCTAG
Protein sequence (LotjaGi4g1v0465000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYVFANCSFSISYFGLPLLQPGVRDSNRGTLTPLCLNGRTGFSRSFSSIPRTRTRTRTRTRTRTRTRSTTSSNSSGTPD DPSESDQTKKTPFGYTRKDVILIGLGVTFLGIGLKTGLEYVGVDPLQAGNVVQLVLVLGLTVGWISTYIFRVSNKEMTYA QQLRDYESKVMEKRLESLTEAELQALLQEVEEEKSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 99 | 99 | - | – | |
| MobiDBLite | 46 | 91 | 46 | - | – | |
| PANTHER | 47 | 196 | 150 | 6.9E-80 | – | |
| PANTHER | 47 | 196 | 150 | 6.9E-80 | ||
| MobiDBLite | 66 | 82 | 17 | - | – | |
| Pfam | 96 | 191 | 96 | 1.9E-33 | ||
| TMHMM | 100 | 122 | 23 | - | – | |
| Phobius | 100 | 118 | 19 | - | – | |
| Phobius | 119 | 129 | 11 | - | – | |
| Phobius | 130 | 150 | 21 | - | – | |
| TMHMM | 132 | 154 | 23 | - | – | |
| Phobius | 151 | 196 | 46 | - | – | |
| Coils | 176 | 196 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0465000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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