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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0001500 |
| Transcript ID | LotjaGi5g1v0001500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | L-ascorbate oxidase like; TAIR: AT1G41830.1 SKU5-similar 6; Swiss-Prot: sp|P29162|ASOL_TOBAC L-ascorbate oxidase homolog; TrEMBL-Plants: tr|A0A072VFN2|A0A072VFN2_MEDTR Multi-copper oxidase-like protein; Found in the gene: LotjaGi5g1v0001500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:272682..274268) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGCTGAACAATATTGGAAGCGGCGTTGTGGTGTTGTTATGCTTTATCACATTCACCAGTACTCTTGCTGAAGATCC CTACAGGTTCTTCAGCTGGAATGTAACATACGGTGACATTTATCCACTTGGTGTTCGCCAGCAGGTATATTATATTATAT ATTTGGTTAATTTTTCACTTTTATCAATTAATTATTAATCATTGGATCTGAATCTCATGAATCAACACGCAGGGAATACT TATCAATGGACAATTCCCAGGTCCAGATATTCATTCAGTTACCAATGACAACCTCATCATCAATGTCTTCAATAGCTTAG ACGAGCCCTTTCTCCTCTCCTGGTACTCATCCCAATCCTATCTCTATCTATCTCATCTGTTTTGATTTTTTAATTTTCTT TAATTTAATTTCAAATGTCAGTTCAGTTGTACTAGTGTCTGTTACTTGTTGGTTCGTACATTGCATATACATTATGGATT ATATAGTGTGTGTTTGGAAAACTTCTGCAGATCCACGTTTGGCCCCGATCCACGTTTGTAGAAGCAAGAAATAGTTGTTT TTGGATTTCTGGATCCACGTTTGGCCTCTCCAGATTTGAAACCAAACACACACATAGTTGGTTTGGTTGAGTCACGCTAC TCGTAATAATAGTGGCTGGAATGGAATATTGTGATATATCCATATGTTCTCTCCCAGACACACACATACACACATGGATC CAGATCTGTATCGCTCGCTGCTCTGCTCTGCTCTACTGTATATTATAAAGTTAATTTGTATTTTCCTTTTCAAATTCATT TGACAGGAATCAATCAGATTTATATTTTTAACTTTATTCACATCGAAAGGGCAAGCAAAAACACCACACGTGATCACGGG ACGCCAACTTACATGATTAATCAAGTATTTATATTGTATTAATCATTAAATTAGAAATACTAATTAATTTGTACATATGG AGATGAAAACCATTATTAACTAAAAGTTCATTATTGTTCCAAATAAGTACTAATTGGTCAGCAGAGCAAAGCTTCTACCA AACACCCCCTTAGCAGTTTGGGTTTGTTGCGAAAATAAATAGAAAGAACAAAAAATGTGCAGGAAGAGTTCACTATAGGC TTTTTGTGTTAATCAGTTGGAATTTCTGTTATTGCTTAGCCACAACAAATTATTGTCAGGGCCCATTTACTTTATTTATT TATTTATGCTTGGCTGGCAATCAATTGCCTTGATTTAGATTTAGTCGATCGAATAATTACGACCTTTATTACTTTTTACT AGTAATTAATAATTATGGATTTGATAGGAATGGGGTCCAGCAGAGAAGGAACTCGTACGAAGATGGGGTATTCGGAACAA CATGCCCAATCCCTCCGGGTAGGAACTTCACATACATACTTCAAGTGAAGGATCAAATTGGGAGCTTCTACTACTTCCCA TCCCTTGCATTCCACAAAGCAGCTGGTGGTTTTGGAGGCATTAGGATCCTCAGCAGACCAAGAATTCCAGTTCCATTCGA TGATCCCGCTGGTGATTACACTGTCCTTATTGGAGACTGGTACAAGTCCAACCACACGGTAATCTAA
CDS sequence (LotjaGi5g1v0001500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTGAACAATATTGGAAGCGGCGTTGTGGTGTTGTTATGCTTTATCACATTCACCAGTACTCTTGCTGAAGATCC CTACAGGTTCTTCAGCTGGAATGTAACATACGGTGACATTTATCCACTTGGTGTTCGCCAGCAGGGAATACTTATCAATG GACAATTCCCAGGTCCAGATATTCATTCAGTTACCAATGACAACCTCATCATCAATGTCTTCAATAGCTTAGACGAGCCC TTTCTCCTCTCCTGGAATGGGGTCCAGCAGAGAAGGAACTCGTACGAAGATGGGGTATTCGGAACAACATGCCCAATCCC TCCGGGTAGGAACTTCACATACATACTTCAAGTGAAGGATCAAATTGGGAGCTTCTACTACTTCCCATCCCTTGCATTCC ACAAAGCAGCTGGTGGTTTTGGAGGCATTAGGATCCTCAGCAGACCAAGAATTCCAGTTCCATTCGATGATCCCGCTGGT GATTACACTGTCCTTATTGGAGACTGGTACAAGTCCAACCACACGGTAATCTAA
Protein sequence (LotjaGi5g1v0001500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELNNIGSGVVVLLCFITFTSTLAEDPYRFFSWNVTYGDIYPLGVRQQGILINGQFPGPDIHSVTNDNLIINVFNSLDEP FLLSWNGVQQRRNSYEDGVFGTTCPIPPGRNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFDDPAG DYTVLIGDWYKSNHTVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| PANTHER | 11 | 175 | 165 | 2.0E-101 | – | |
| PANTHER | 11 | 175 | 165 | 2.0E-101 | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| SUPERFAMILY | 23 | 175 | 153 | 6.47E-37 | ||
| Phobius | 25 | 177 | 153 | - | – | |
| Gene3D | 27 | 149 | 123 | 4.0E-25 | ||
| CDD | 30 | 145 | 116 | 4.19179E-76 | ||
| Pfam | 35 | 148 | 114 | 1.1E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Copper ion binding | Interacting selectively and non-covalently with copper (Cu) ions. |
Expression pattern of LotjaGi5g1v0001500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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