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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0003500 |
| Transcript ID | LotjaGi5g1v0003500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peroxidase; TAIR: AT5G42180.1 Peroxidase superfamily protein; Swiss-Prot: sp|Q43872|PER64_ARATH Peroxidase 64; TrEMBL-Plants: tr|A0A151RQC6|A0A151RQC6_CAJCA Peroxidase; Found in the gene: LotjaGi5g1v0003500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:997326..998332) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGCTATTGCTACAGTGATGATCATGCTAATCATAAGTACTGTGTCCTTCACTTCTCTAGCGAGTGGACTAAGTTC GAATTACTATGACCACACGTGCCCTCATGTAGACTCCATCGTCTCCAGTGCTGTACATAAAGCAACCACCAATGACAAAA CTGTCCCTGCTGCTCTGCTTCGCATGCATTTTCATGATTGCTTCATAAGGGTATGAATATATGCATTTTGTTTGTTATTC CTTCTTAATTCTTATAATCTTTTGTTATTACTAACTGATCATATATATATTTGGTCCTGAATTTGAAGGGTTGTGATGCC TCTGTTCTGCTGGAATCAAAGGGAAAGAACAAAGCAGAAAAAGATGGGCCTCCTAACATTTCTTTGCATGCATTCTATGT CATTGACAATGCTAAGAAAGCAGTAGAAGCTGTTTGCCCTGGTGTTGTATCTTGTGCTGATATTGTGGCTCTTGCTGCTA GGGACGCTGTTACACTGGTCAGTAGTCACAAAATAGTGACATCAAACCTGTCAAATATAAGCCTGTCCATTTTGAATTGG GTCAAATTAGATTCAGAATTTTTTTTTCCCATATATTTTGTGACCAATCATGTTTACCGCTTAGTTAAGTATTCACGATA AGAAAATTAGTCATGGCTGCTGATAGTAGATACCCAATCTGGCAACATTTTTTTTTAATTCCAATTAGTGGGTAATTTGA TACTTCTGATTTTGGGTATAACAAATTATAAGAATTTAATTAACTAAACTTTTTTGCTTGGCTATGGGTGGCTTTAGTCT GGAGGGCCCACTTGGGAAGTACCAAAAGGAAGAAAGGATGGTAGAATATCAAAGGCCACTGAAACCAGACAATTGCCAGC TCCTACTTTCAACATCTCCCAATTGCAACAAAGCTTTTCTCAAAGAGGCCTTTCCTTGGAAGATCTCGTAGCCCTCTCAG GTACTACTCCTTTAAATTGACCTTTTCCAAAATTGAACAATTATTGA
CDS sequence (LotjaGi5g1v0003500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCTATTGCTACAGTGATGATCATGCTAATCATAAGTACTGTGTCCTTCACTTCTCTAGCGAGTGGACTAAGTTC GAATTACTATGACCACACGTGCCCTCATGTAGACTCCATCGTCTCCAGTGCTGTACATAAAGCAACCACCAATGACAAAA CTGTCCCTGCTGCTCTGCTTCGCATGCATTTTCATGATTGCTTCATAAGGGGTTGTGATGCCTCTGTTCTGCTGGAATCA AAGGGAAAGAACAAAGCAGAAAAAGATGGGCCTCCTAACATTTCTTTGCATGCATTCTATGTCATTGACAATGCTAAGAA AGCAGTAGAAGCTGTTTGCCCTGGTGTTGTATCTTGTGCTGATATTGTGGCTCTTGCTGCTAGGGACGCTGTTACACTGT CTGGAGGGCCCACTTGGGAAGTACCAAAAGGAAGAAAGGATGGTAGAATATCAAAGGCCACTGAAACCAGACAATTGCCA GCTCCTACTTTCAACATCTCCCAATTGCAACAAAGCTTTTCTCAAAGAGGCCTTTCCTTGGAAGATCTCGTAGCCCTCTC AGGTACTACTCCTTTAAATTGA
Protein sequence (LotjaGi5g1v0003500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAIATVMIMLIISTVSFTSLASGLSSNYYDHTCPHVDSIVSSAVHKATTNDKTVPAALLRMHFHDCFIRGCDASVLLES KGKNKAEKDGPPNISLHAFYVIDNAKKAVEAVCPGVVSCADIVALAARDAVTLSGGPTWEVPKGRKDGRISKATETRQLP APTFNISQLQQSFSQRGLSLEDLVALSGTTPLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| PANTHER | 6 | 190 | 185 | 1.5E-107 | – | |
| PANTHER | 6 | 190 | 185 | 1.5E-107 | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| Phobius | 23 | 193 | 171 | - | – | |
| ProSiteProfiles | 24 | 193 | 170 | 48.71 | ||
| SUPERFAMILY | 24 | 188 | 165 | 7.51E-60 | ||
| CDD | 24 | 188 | 165 | 8.72184E-109 | ||
| Gene3D | 28 | 159 | 132 | 1.3E-71 | – | |
| PRINTS | 34 | 53 | 20 | 2.3E-35 | ||
| Pfam | 42 | 189 | 148 | 1.1E-50 | ||
| PRINTS | 56 | 70 | 15 | 3.9E-21 | ||
| PRINTS | 58 | 78 | 21 | 2.3E-35 | ||
| PRINTS | 97 | 110 | 14 | 2.3E-35 | ||
| PRINTS | 116 | 126 | 11 | 2.3E-35 | ||
| PRINTS | 117 | 134 | 18 | 3.9E-21 | ||
| PRINTS | 135 | 150 | 16 | 2.3E-35 | ||
| PRINTS | 135 | 147 | 13 | 3.9E-21 | ||
| Gene3D | 160 | 189 | 30 | 1.3E-71 | – | |
| PRINTS | 181 | 193 | 13 | 2.3E-35 | ||
| PRINTS | 182 | 193 | 12 | 3.9E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peroxidase activity | Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O. | ||
| Biological process | Response to oxidative stress | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. | ||
| Molecular function | Heme binding | Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. | ||
| Biological process | Hydrogen peroxide catabolic process | The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0003500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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