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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0011900 |
| Transcript ID | LotjaGi5g1v0011900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycosyltransferase, putative; TAIR: AT1G75420.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp|Q9R9N2|LPSB_RHIME Lipopolysaccharide core biosynthesis mannosyltransferase LpsB; TrEMBL-Plants: tr|V7ASI7|V7ASI7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0011900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:2645437..2648427) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGAGGCATTCGCCGGCGTGGTTGACGGCAATGCCGAAGAACTGGTTTCCCCTGCTAGTGCTAGCGGCGGTCTTGTC TCTCTCAACCGTCACCCTCCTCTTCATCCGAACCACTTCCGATTCCTGCAACGCTTCTCAGCCTCATCCCGAGCTTCATG TTCCGCCGTCGCCGGAACCGTCCCTGGAGTTCATGAAGTCGAAGCGGGTTCTGATGGTCTCGCACGAACTCTCTCTCTCC GGCGGTCCTCTGCTGCTCATGGAGTTGGCGTTTCTGTTGCGCGGTGTCGGCTCCGACGTCGTTTGGATCACCAACCAGAA GCCTCTGCAATCTGACGACATTGTGTACAGTTTGGAGAATAAGATGTTGGACAGAGGGGTGCAGGTAGACGTAGTAGTTC TTTCTATCTATTCATCTCAATCACATTTGCTGTTGTTGTGAATAACTGTATTGTATGGTGCTTTCAAATTTGCACATTCA TTCAATGTATGAGAAGTTTGAATGCAAGTTACAACCATTTTAGATTGAACAAGTGTGGAAAGTGTAATGTTTTGTTGACG TATCTTTTTCACCGGAAAAAAATGAGTGATATGATATGTGATGTGACAGGAAATGCAGAGAGATAGGAAGAAAAATGCGT GGAAATGAGATAAGAGAGAAAGTGAAGTGCGAGTGAATCATTACTGTTTAAATTACCGTTGTATTGTGACAATTTTTTGG AAATTGGGGATAAATGAAGCTGACGCATAGACATTTCCAGCAGAGTGGACAAAAAATTTAATGAGAAATTTGAATACTAG AATTTTAGATTAAACATATGGCAGAAGTGTGTTAAATTACGGTTGCATTCATGGTTGTGGTTGTGTCACAACATTTGATA TAGCTGAAAATTGTGGATAAATGTGGTTGATGCATTCATAATTACGGTTAAGAAACAGCAGAGAGGACAAGAGTTTTAAT CTTTGCCGGTTGTTGCTAAGTGGAATTTAAAACTATTGAGAACTTAGAAGCAATATTTGGCATTTTATAGGTTTTGGCTG CAAGAGGCAAAGAGGCTGTGGATACGGCTCTTAAGGCGGACCTAGTGATTCTGAACACTGCTGTGGCCGGGAAGTGGCTT GATGCGGTTCTCAAGGAAAAAGTTTCGGAGGTTCTTCCAAAGGTTTTGTGGTGGATTCATGAAATGCGAGGGCATTATTT CAAAATGGAATATGTTAAGCACCTCCCTTTTGTTGCAGGTGCAATGATCGATTCCCATACCACCGCAGAGTACTGGAAGA ATAGGACTAGGGAGCGTTTAGGGTATGCTTTTCTTGGTTGTGATTTTCAATGTTTTTGCCGCTAGTTTTGAATAATGTAA CCTTGGCCACACTGTGCCCTGCAACTGCAATTTAATGCTTTCTATCATGTTATTAAGTGTTTTGGTTGGATTTTGTAGGA TTAAAATGCCTGAAACTTATGTTGTGCATCTTGGAAATAGCAAGGAGCTAATGGAGGTTGCGGAAGATGGTGTAGCAAAG AGGGTTCTTCGTGAGCATGTCCGACAATCTCTTGGATTGAGAAATGATGATCTACTTTTTGCCATCATAAATAGTATGAT CTCTTCCTTGATGTTTTCTACCCTCACTCATTAACTATGCCAATGTAATTCGTTGGATGTGTTTAGGATGTGTTTGCTTT TGTTGAGAAGGGGAACATGGTTGTAGGCACAAGGAAGAGATGTAAAATTAGTAATTTCCTTCACTTCCGGAGTTACGGTT CTAACATAGATAATTTGTCTTTAGCAGCACTTGTTATGGAATAACCTGATCCATCTGTCTGTCGATTATAGTTTTTCTTA TTGCAATCTGGATTAGATAGCTACTCATAATCATAAAATTCCCTTGTGTATGTGAATTGAGAGAGCCTAGGGTCAGCGAT GAAGTAGGGATAGGCAAGAAAGGAGATTGTGATGATTCCACAAATTATCACTTTCTCTTTATGTAATTCATCACAAAATT CAATGGTTGAAGTGCATACCAATTTAACCCTCTCCTTTGGTATATATCCCTTTGATTCATTTTGACAATCCTTTTTGCCG GTCTATATTTTGAGCATCAAGGGTGATATAATTGCAGGTGTTTCACGTGGTAAAGGGCAAGATCTATTTCTTCGGTCCTT TTATGAAAGTTTGCTACTCATCCAAGAGAAGAAACTGCAGGTTCCATCTTTGCATGCTGTAGTTGTAGGGAGTGATATGA GTGCACAGACAAAGTTTGAAATGGAGTTACGTAATTTTGTCATAGAGAAAAAAATCCAGGACCGTGTTCACTTTGTTAAC AAAACTCTGGCAGTGGCTCCCTACCTTGCTTCTATTGATGTTCTGGTTCAGAATTCTCAGGTATCTTCTCATAATATACC ATGCTAAGATGTGCATTAAACAAATTACGTTTTACATTCTATCATCTCGTTTTACATTCTTATTTTGATTTGTTTCTAGC TTCCATAAAGTATTAATGAAAAGTTCAGTGAGGGACTCAAGATAGATTACATAATGGTTACTAGTCCAGTAGTCCCCTGT CTAAAGTTTCACACCTCATAGCCTTCTTGAAACAATCAACGAGTTTTGCCTCAGCCTTCTTTATTTTGTTCACGAAATAC ATGAATTGTTCTGGTAAATTATTTCTAAATCTTCTTCTCTTCATATTAGGCACGGGGAGAATGCTTTGGGAGGATAACCA TTGAAGCAATGGCATTTCGCTTGCCTGTACTTGTAAGTATAAGTTTCCTTGACAATATGCCTTTTCCTGTCTTATCTTTT TTTTTTGTAATGTTTACTTTCCTCTAGTTTTGCTCATCAGTTGTTTAGGTCCGGTTTGCTGCATATGCTGCTTTCTTTCT TTATTCATTTCTCATAAATCTCTGTGATGTTACTGTTTTATCTTTTATTTCATTTTTCATCCAGCACACATGCAATCACT TGCTCTTCAATTAAAAAGAAAGGAAGAATAA
CDS sequence (LotjaGi5g1v0011900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGGCATTCGCCGGCGTGGTTGACGGCAATGCCGAAGAACTGGTTTCCCCTGCTAGTGCTAGCGGCGGTCTTGTC TCTCTCAACCGTCACCCTCCTCTTCATCCGAACCACTTCCGATTCCTGCAACGCTTCTCAGCCTCATCCCGAGCTTCATG TTCCGCCGTCGCCGGAACCGTCCCTGGAGTTCATGAAGTCGAAGCGGGTTCTGATGGTCTCGCACGAACTCTCTCTCTCC GGCGGTCCTCTGCTGCTCATGGAGTTGGCGTTTCTGTTGCGCGGTGTCGGCTCCGACGTCGTTTGGATCACCAACCAGAA GCCTCTGCAATCTGACGACATTGTGTACAGTTTGGAGAATAAGATGTTGGACAGAGGGGTGCAGGTTTTGGCTGCAAGAG GCAAAGAGGCTGTGGATACGGCTCTTAAGGCGGACCTAGTGATTCTGAACACTGCTGTGGCCGGGAAGTGGCTTGATGCG GTTCTCAAGGAAAAAGTTTCGGAGGTTCTTCCAAAGGTTTTGTGGTGGATTCATGAAATGCGAGGGCATTATTTCAAAAT GGAATATGTTAAGCACCTCCCTTTTGTTGCAGGTGCAATGATCGATTCCCATACCACCGCAGAGTACTGGAAGAATAGGA CTAGGGAGCGTTTAGGGATTAAAATGCCTGAAACTTATGTTGTGCATCTTGGAAATAGCAAGGAGCTAATGGAGGTTGCG GAAGATGGTGTAGCAAAGAGGGTTCTTCGTGAGCATGTCCGACAATCTCTTGGATTGAGAAATGATGATCTACTTTTTGC CATCATAAATAGTGTTTCACGTGGTAAAGGGCAAGATCTATTTCTTCGGTCCTTTTATGAAAGTTTGCTACTCATCCAAG AGAAGAAACTGCAGGTTCCATCTTTGCATGCTGTAGTTGTAGGGAGTGATATGAGTGCACAGACAAAGTTTGAAATGGAG TTACGTAATTTTGTCATAGAGAAAAAAATCCAGGACCGTGTTCACTTTGTTAACAAAACTCTGGCAGTGGCTCCCTACCT TGCTTCTATTGATGTTCTGGTTCAGAATTCTCAGGCACGGGGAGAATGCTTTGGGAGGATAACCATTGAAGCAATGGCAT TTCGCTTGCCTGTACTTCACACATGCAATCACTTGCTCTTCAATTAA
Protein sequence (LotjaGi5g1v0011900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARHSPAWLTAMPKNWFPLLVLAAVLSLSTVTLLFIRTTSDSCNASQPHPELHVPPSPEPSLEFMKSKRVLMVSHELSLS GGPLLLMELAFLLRGVGSDVVWITNQKPLQSDDIVYSLENKMLDRGVQVLAARGKEAVDTALKADLVILNTAVAGKWLDA VLKEKVSEVLPKVLWWIHEMRGHYFKMEYVKHLPFVAGAMIDSHTTAEYWKNRTRERLGIKMPETYVVHLGNSKELMEVA EDGVAKRVLREHVRQSLGLRNDDLLFAIINSVSRGKGQDLFLRSFYESLLLIQEKKLQVPSLHAVVVGSDMSAQTKFEME LRNFVIEKKIQDRVHFVNKTLAVAPYLASIDVLVQNSQARGECFGRITIEAMAFRLPVLHTCNHLLFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 45 | 45 | - | – | |
| PANTHER | 1 | 381 | 381 | 4.3E-224 | – | |
| PANTHER | 1 | 381 | 381 | 4.3E-224 | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| Phobius | 17 | 36 | 20 | - | – | |
| Phobius | 37 | 45 | 9 | - | – | |
| Phobius | 46 | 388 | 343 | - | – | |
| Pfam | 66 | 243 | 178 | 2.0E-67 | ||
| SUPERFAMILY | 69 | 381 | 313 | 1.2E-23 | – | |
| CDD | 121 | 381 | 261 | 4.50703E-19 | – | |
| Gene3D | 244 | 384 | 141 | 7.0E-18 | – | |
| Pfam | 252 | 381 | 130 | 1.1E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0011900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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