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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0148200 |
| Transcript ID | LotjaGi5g1v0148200.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Prohibitin, putative; TAIR: AT2G20530.1 prohibitin 6; Swiss-Prot: sp|Q9SIL6|PHB6_ARATH Prohibitin-6, mitochondrial; TrEMBL-Plants: tr|I3SJG9|I3SJG9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0148200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:38240626..38243217) extracted from Lotus japonicus Gifu genome v1.2.
TGTAATGTGTTTTTCTTTTTCCTTTGTTTCCAAGCATTTGGTTTGGACTGTGTTGCTTTTCCCATTAAAGTGTGGGCTGC TGTAACATCCCTAGTAAGGGTTGGGCTTGAGCCCGTTTCTTTTAATCTTGAATCACAAAAAATAAAGGAAGCCGTGTGAG CTCTAAAACCCTACATCGGGTTGAACCCTCTTTCCATCCCTTCACTGCAACCAAGGTTCGCTACCTCAATTTCCTCTTCT TCTTCTTCTTGTTCCTGCAACTAGTTTTATGCATGTTACCTGTGCGATTTGATGATTAATCTGATTTATTTATTTAGTCC ACCATTTCATGATGTTGACGACAGATGAATTTCAACAACGTGAATGTCCCAAAGGTTCCTGGCGGTGGAGTCGCTGCTTT GCTTAAAGTCAGCATTATCGGTGGGCTTGTTGTGTATGGGGCTACTAACAGCTTGTACAATGTTGAGGGTGGTCATCGTG CCATTGTCTTCAACCGTATTATTGGTGTCAAAGATAAGGTTATTCAATTTCCCATCACTGTTTAATAGATTAGAGTAGTA ACCTTGTTGCATAATATCAATATCTTATATGCAGGTCTATCCTGAAGGAACACATATCATGATTCCTTGGTTTGAGAGGC CTGTCATTTATGATGTTCGTGCACGACCTCATTTGGTCGAGAGTACTTCAGGAAGCCGTGATCTCCAAATGGTGAATCTC AACTCTCAAGTTGTTCATACATATTTGCTAAGATCCCTTTAATTTGAACTATTACATTCTACGACTATGATATTCTAGGT TTATGGTGGAATTGTTAATACTTTTGTTATTAGGATCATGGAAAAAGCTTTACTATGGACACTTCTCTTGACTTTTTATT TTTATTCGATGCAGCATAGACCACGGTGGCTTCACTACATTTTCCATTGATCATAGATCTTTTGTTTTGCTAGGTGAAAA TTGGACTTAGGGTCCTTACCCGTCCTCTACCAGACCAATTGCCTACCGTTTACCGTACTCTGGGTGAGAATTATAATGAA AGGGTCCTACCTTCTATTATACATGAAACTCTCAAAGCTGTTGTTGCACAGTATAATGCCAGTCAGCTCATTACCCAGAG AGAGGTTAGTATTTACAAAGACCCTCTGCTATCTTTGTTCAATTAGTAACTGGATTAATTTTAACTATGCCTCTTTATTC CTTAGTTGGAATTTGTACCTTTTCAAATCAAGTAGATTCACTTCTGGATAGATATTTACAAGTAAATTACAACCTTATGG TTGAGACTGATTATTTGTTAAATGTGCTATTGTACAGAATGTTAGTCGAGAAATAAGGAAGATATTGACTGAAAGGGCCT CCCAATTTAGTATTGCTTTGGATGATGTTTCAATCACAAGTTTGACGTTTGGGAGGGAATTTACAGCTGCAATTGAAGCC AAGCAGGTTGCTGCTCAAGAAGCTGAGAGAGCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTCAT TAGAGCTCAGGTAAAATACTCTCCCACCCCTATATTTATGAAATATGATGGTACTTAATATCTATAGAAGTTGCTTGCCG TGCTTCAATGGTTTTGGAATTGGAATTGCTACTGAACCGTACAAAATAAAATAATCAAAGAAAGTGAAAGGAATAATCAT TTTTAAGGTATTTGCTGATTGTCCTGCTTGAGTGGTACACCATGACTGTTAATTATAACTGTGGTTGAACTTCACCAACA CTATAGAATTATGAACGAATCTTCTACTCCAGCTTCCTCCCTCTCCCCTCAGCTTTTTTTCTTTTGAATTGTCATGTCCT GTCTGTAACAAGTAAATAGTAATGTATGGATAAGCTATCCAGAAAGGAAATTAAATTTCTTTAAGCATGACGCTATAGTA CTTTTTTCTACAAAAGTAACAAAACAATATAGATGGCTGCTTTTACAACTCATCATTATTGATATATTCCTTCTTTTTTA TTACTTTTTGGCAAACAGGGTGAAGCTAAGAGTGCCCAGTTGATTGGTCAAGCAATTGCTAATAATCCTGCATTTATCAC CTTAAGGAGAATTGAAGCTGCTAGGGAAATTGCTCAAACAATATCAAATTCTGCCAACAAGGTTTACTTGAATTCGAATG ATCTCCTATTGAATCTTCAGGGGTTAAAGTTGGAACCTATTGGGAAGAGATAGTTGTGAAGCTGAATTCACTTGAAAACT TCATCCTTTTAACTGTTGAAATATGAGATTCAGCTTTGTGAACTGAAATGTGGACGAACTGATAGTCATTATCCATTGTT ATCAGTGTTGCAAATGGCGGACCATGGTGGGTGACAGACTATCAGCCATGGCAGTTTGCTGGAATTTCGCCATGGCGCAT ATTGAGTCTAATTGCCACGAGACATAAGTTGCATGCCTTCAGTTATTTGGTGCTATCCACCCTATTGAAATAATTTATTT AATTAAACACAGTATTGATTTTTCATACTTTATCTAGACAACTTGTATACTATTTATCTACCTATCTTGTTTCTTATTTT ACGTCTTATTGCATGGTTTCCCTTTTCTTTCA
CDS sequence (LotjaGi5g1v0148200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTTCAACAACGTGAATGTCCCAAAGGTTCCTGGCGGTGGAGTCGCTGCTTTGCTTAAAGTCAGCATTATCGGTGG GCTTGTTGTGTATGGGGCTACTAACAGCTTGTACAATGTTGAGGGTGGTCATCGTGCCATTGTCTTCAACCGTATTATTG GTGTCAAAGATAAGGTCTATCCTGAAGGAACACATATCATGATTCCTTGGTTTGAGAGGCCTGTCATTTATGATGTTCGT GCACGACCTCATTTGGTCGAGAGTACTTCAGGAAGCCGTGATCTCCAAATGGTGAAAATTGGACTTAGGGTCCTTACCCG TCCTCTACCAGACCAATTGCCTACCGTTTACCGTACTCTGGGTGAGAATTATAATGAAAGGGTCCTACCTTCTATTATAC ATGAAACTCTCAAAGCTGTTGTTGCACAGTATAATGCCAGTCAGCTCATTACCCAGAGAGAGAATGTTAGTCGAGAAATA AGGAAGATATTGACTGAAAGGGCCTCCCAATTTAGTATTGCTTTGGATGATGTTTCAATCACAAGTTTGACGTTTGGGAG GGAATTTACAGCTGCAATTGAAGCCAAGCAGGTTGCTGCTCAAGAAGCTGAGAGAGCTAAATTTGTTGTAGAAAAAGCTG AACAAGACAAAAGAAGTGCTGTCATTAGAGCTCAGGGTGAAGCTAAGAGTGCCCAGTTGATTGGTCAAGCAATTGCTAAT AATCCTGCATTTATCACCTTAAGGAGAATTGAAGCTGCTAGGGAAATTGCTCAAACAATATCAAATTCTGCCAACAAGGT TTACTTGAATTCGAATGATCTCCTATTGAATCTTCAGGGGTTAAAGTTGGAACCTATTGGGAAGAGATAG
Protein sequence (LotjaGi5g1v0148200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNFNNVNVPKVPGGGVAALLKVSIIGGLVVYGATNSLYNVEGGHRAIVFNRIIGVKDKVYPEGTHIMIPWFERPVIYDVR ARPHLVESTSGSRDLQMVKIGLRVLTRPLPDQLPTVYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRENVSREI RKILTERASQFSIALDDVSITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGQAIAN NPAFITLRRIEAAREIAQTISNSANKVYLNSNDLLLNLQGLKLEPIGKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 289 | 289 | 6.2E-194 | ||
| PANTHER | 1 | 289 | 289 | 6.2E-194 | – | |
| SMART | 36 | 197 | 162 | 4.5E-45 | ||
| CDD | 37 | 231 | 195 | 1.95507E-89 | ||
| Pfam | 39 | 215 | 177 | 2.6E-25 | ||
| SUPERFAMILY | 68 | 204 | 137 | 9.55E-16 | ||
| Gene3D | 76 | 199 | 124 | 7.6E-6 | – | |
| PRINTS | 80 | 96 | 17 | 1.2E-64 | ||
| PRINTS | 98 | 117 | 20 | 1.2E-64 | ||
| PRINTS | 121 | 139 | 19 | 1.2E-64 | ||
| PRINTS | 144 | 160 | 17 | 1.2E-64 | ||
| PRINTS | 167 | 186 | 20 | 1.2E-64 | ||
| PRINTS | 192 | 215 | 24 | 1.2E-64 | ||
| Coils | 196 | 216 | 21 | - | – | |
| PRINTS | 215 | 231 | 17 | 1.2E-64 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi5g1v0148200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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