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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0154900 |
| Transcript ID | LotjaGi5g1v0154900.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TBC1 domain family member; TAIR: AT4G28550.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15; TrEMBL-Plants: tr|K7LHB7|K7LHB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0154900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40178252..40184237) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAAAATGCCAACCAAATCTTTTAATGTAACATTGTACAAATAAACCGTTGCGAAAAAATGCATATATATAGTATAAC ATGATCTTGTTCCTCTCTTATTCAATCATTGTTCCATTTTTGGAAATCATTCTAATTCAACACTCATCGCCTTCAATCTC TCTCTCTCTCACCTCCTGCAACAAATTGCATTCTCCATTTGTTCTTCCTTTGTTTCAATTCAATCTCTCTTACGCAGCTC CAGCCCAAGCTTCCCCTCTTTCGCATTTCCAAAATCTCCAAGGTACTTCCTATATCTCACCCGCGATGTCACAATCGCTT CAAAAAATGTTTCCACAAATGGGTTTTTCCTGGTGCTGCCTTAAGATGCAGAATCAGATCAAATTCACATTGTTGTTATT GTTATTGCCAAACAAAGATTTAATAGGTGTCTTTGTTTTTGTTTTTTTCCCTTTTTTCCCTTATAATTTTACAAATTTAA GGAATCTAACTTAGTTGAATTCATTGAAAAATGTCATTGATGGAAACTAACTTAGTGAAATAGAGTAATAAACCCTTTTG TTTGTTTTTTACATTTCATTGAAGTAGAAAGAATAATTTTTTTAATGTGTTGGATTTGGGTTTCTTCAATCACAAGCAAT TGGTCATGATGGGTCTCTAGCAACGGACTTGGAATTGAAGAGCTTCGGTTGAGTAGATGATTGGTTGTGGGGGACTGTGC AGAGTTCTTATGAGGAGTTCTGGAACTACTGAATTGAATACTTTCTACCCCATTCGACCAGAATGCCAAGCTGACGCTCC AACCACTCGATTTAAACCAAGGGTGCAGTTTTGCTTCTCTACTAATGCTACCTTAATCACACTTGCTATTGTCTATGCTG ATTTAGTTTTGTTCCCAGATGAACATCAATTCAATTTATGCTATGTGGAATGATTATTCGTTTGTGGATGTGATAAGCAA CATACTATTGCATGATTGACATTTTTTGCTTATGTTTTGCCTGTGCATACAAGATAGATGTTTTTCATCATTGTTGTTTT ATGTGCTTGTGTGAGAAGAGAAAGAGTTTTATTTTCTGCTAAAAAAGTAGGTGCTTGTGTTTTGTCTTCTGATTTATCCA CTTCTTTTTCTGTTTCCACAGTCTGGCAAAACTCTAAGTGCAAGAAGATGGCAAGCTTCATTTTCTGAAGATGGTCGCTT GGACATTGCAAAAGTTCTTAGACGAATCCAGCGGGGGGTAACCATTTTTGTTTGCTTGTATATTGTTTTACAGTGCATTA CATTGCTGAATTTGTCAATAATAAGTAATTGTAGTCCTCCTTTTGGCTTCCTCTATGAGTATGTGTGTTTGTATGTTTAC AAATCTACTTCATGGTGACCCATTCACTATGGTTTGCAGACTGGCAATATCTGTAAACTTTACCCCCTTAGAGGATGAGA TATTTTTCTCTGTAAAAGAGACACCATATGATAATAGTTTATGATAACCCCTTGATGCACTATTTTTCTTGCAACATACA TCAAAGAAGTTGAAATCATCTTCTTTTTATTATTATTCAAGTTTATGTTCCTTCTGTTTTGTGCTTATTCCTGTATTTAT TTCTGTAAATTATGTAGGGTGTCCACCCTTCAATCAAAGGGGAAGTATGGGAGTTCTTGCTCGGTTGCTATGATCCTAAC AGCACAGATGAAGAACGTAATGCTCTCAAGCAGCGTAGGAGGTATATTTTCATTTCAATGTATATATGCATAATCAGATT AAGGGGACTAAGAGTACATTAACACTACGCCACAGTTTTTTGTTGTCCTCTGAATTCTGGTAATCGTTTCTTTGGAATAT AATCTGTGCTAAATTGCCACATTTCTTAGTGGCTAATATAGGTGGAGAGGTAACAAAACATATAAATAAGTAGACTGTAT TAAACTCTCATCTGCCATTATCACCTTCCTCCATTTGTCACTGCCAGCACCACTTTTCTGCTGCTGCCACTACCAGTGCC TCCTATCATTTTTGTCACTTATCTCCATTTTTATGACTTAGACCATTGCCTTATCAGTTATCACTGCCAGCAATGTTGTA TAACTGTTGAGTGCAGACCAAATATGTGTCACAATTTTTGAATGTCCATTCTTCTGATTAAGTTTTTTTCTTTGTTCCTT ATAATATGTGAACAATAAGAATAATGCTCTCTACTTTATCTCCCATATAATCTAGACTATATTAAGATGAGACGGCTTTC TAGGTTTCCTCCTGCAGTCTTATGTAGGTTTTCCTAATAAGCATCTGGTGTAACTTTCTTCAAGGTGTAAATTATAGTAT TTTCTCCCTTGTTTTACTTCTTTGTATTGATTAAGAATAGACCAAACAGTTAAGTCTTGTATAAATTTCTTACTCAGGGG GCAATATGATATGTGGAAAGCTGAATGTCAAAAGTTTGTCCCAGTCATAGGTAGTGGAAAATTTATCACCACACCCCTCA CTAATGAAGATGGTCAGCCAATAAATAATTCTTTGGTAGGTGTCCGGTCTTCAGATAAGAAAGTTGTACAGTGGATGCAG TTATTACATCAAATTGGTATGTATATGTTGCTGCTGAAATACTGGATATTTTCTTATTCTGTTTGGCTTTTGTTTAGTTT GATGAAATATAATCGTTACATAAGTTAATGCGGGTATTTTTCCTTTAAATATTGTTTCTTTGTGGTTTACTAATAATCAA TTTGTTTTAACAAGCATCTAAAGTTACAATTGATTATTTTGCATTGTAGGGTTGGATGTTGTTCGAACAGATCGAACACT TGTCTTTTATGAAAGTGAAGCTAATCAAGCAAAACTTTGGGATCTTCTTGCAGTTTATGCTTATTTGGACAATGATATTG GTTACGTGCAAGGTGAATGAATGAATCACTACAACTTTCATTTTTTTAATGGTAACCTGAAAGAGCTTCAAGAAGTTTGA GACATTCTTAAGCAAGGATTTTCTTTGCAGGAATGAATGATATTTGCTCACCTTTGGTTATGCTTATTGAGAATGAAGCA GACTGCTATTGGTGCTTTGAGCGTGCGATGCGAAGGCTGGTATGCTAGACATAGCTGGAGCAATTTTGCTTAAAAGTGCT AGTTCTATATGTTTCTTGTGTGGGTAATTGATTTGTAAAAACTACAATCTAGTGGGCAGTAACTATAAAACTACCGGCAT AAAATTTTATTGGACTGTTAATTCTTGTGCTTTAGTTTTTTAGGTTTGAGCATGTCAATATATTGTGATGTTCCCACAGC TTGTTTAATCCTTACATTTTATAGTTTTTGAGACTAGAAACTAAGGGGCACAATTAGTAATTTCTCTAGATTTTTCGCAC GTCTGTTATTTTTGCATATAGGTTTCCACTAAATATTGTTGTACAAGAAGTAATTGCTTCTTTCTTATTTTCTTATGGGT ACCGTTTGGATGCAGACTAAAGAGCACTTATTTGTGTTTATGTACTAGAAAAAGCACTAAATAAGCTCCAATAGGTGCTC TTTGCTCTGCAGCCAAAACGTGCTCATTGTTGCACCTGGTCCTTAATAAAATGTAGAAAATCAATATACTACAATTAAAC ATTATATTAATGCATCTGGTTCGAAGGATAACTTTTAGCATGTTCTATCTACTGCTTTAGTTTTCATCTGCAGACCACAA ATTTTTTTTCTCTGACAATTAAATTTTCTAGTCTTTTTTAAATTGCTGCCTTTGTTTCCATAACAGAGAGAGAACTTCAA GTGCGATGCCAGTTCAATGGGGGTGCAATCTCAGTTGGGTACACTCTCACAGATAATGAAAACAGTTGATCCCAAACTTC ACCATCATCTTGGTATGTAAAACTTGTTTGGACAGCTTCTAATATGCTATGAGTAGTAGTTTTGAAGTTCAGATTCTACT ATCTTTTTAATTTGAACCAGAATCAGCATCAAATATCACACATTTTCATCACACAGTTTAGGATGGTCGATTATTGTGGA AAATACTTCTTTTTTTGACAATCATATTATGACGTGGCTTTTTAACAGAAAATTGTATATGTATTTGCACCTACATGATA AAAAAAATTATAGTCTAAAGTAATCAGTACACCTATCCTATGTTTTGATATTTACTCTCTATGTTCCTTAATATGTGTCA CTTTAAGGTTTTGACACATGTATTAAGAAATAGTATCAAATGTTCTTGTTTTTATTAAAATCACTACCTAACTTCCTAAT ATACCATTTATCTCTCTTATTAATTCTGACTTTTCAATTTTCCTATCATCATATTAAGGAACAGAGGGAGTAATAAATAG TGGAGTGGAAATGAATGAGATAAAACAAAATAGAGTAGAATGAAACAAAGCTAAGATTCCATTGTTTAGATATTTTTATG ATTTAATTGTGAAAAAAGTTGGTTCCATTTCATACCTCCAAGTTGGAGAGAAAGAAAAGGTAGTGTATTAAATGAATTGG ATGAAACGTATTCCATCATGTTCCATTCCATTACATCTTATTGTAAATAATTCAAACGATTCTATTCTACTATATTCCAT CATTTTCCATCAATCCAAACATAACCTAAGGAAGACCGTGTCAAGTTGATCACCTGAAAGCTAGTGTCAAGTTTGTCTCA ACATGCAGAAGCTCTCTTATGTATCAATGTGCAAGAAGCCTACCTTTATCAACTTCATATCTTCGTATTTTGCAGAGGAT TTAGATGGTGGAGAATATCTCTTTGCATTTCGCATGCTGATGGTTCTTTTCCGAAGAGAGTTTTCTTTCGCTGATACATT ATATCTTTGGGAGGTAAGGATGAATTTCTCTAATGATATAAAGTTTCACAATAAATGATTTATTAGAGGTTAAAGAGCTG TTGTGTTATGATTCCTTGACATTTCTTGATGAGATAGAGTATTTCACATTAATAGCTCATTTTAAGACATAATATAGATT GTTTCCAGTTGATGTGGGCAATGGAATACAACCCAAACCTCTTTGCAAGATACGAGGATCCAGATCATGCCAAATCAAAA GGCCCTTCATCTGCACTAAATGACAAGGTTTTGAAGCAATATGGAAAATTCGAGAGAAAAAACTTGAAGACTGGACAGAC AGAGGAAACTGGTGCACTGGCTGTTTTTCTTGTTGCAAGTGTTCTTGAGATCAAGAATAGGCGGATTTTAAGCGAGGCAA AGGGTGTGGACGATGTTGTCCAGGTCTTTCTCAATCTCCTATATTTGTATGGGTGCAATGTATTCATGTTCTTGTATATG TGTGTATCTGACATGAAACTATTTCTTCAGATCTTGGGTGACATAACCTCAAATATTGATGCTAAGAAAGTGCTTACTGA AGCATTGAAAATTCAGAAAAAATACCTGAGCAAGGTAAGCTTCACTATTATCTGTGACATTTCCCATCTTAAGTTTTCTT TGTCAGTTTTCGTTGCAAGTAGTAGGGTGTTGCTGAGAGATTTTACTATGCTACTACATTTCTATCTATGATCTCCTTAA TCAAGTAATCATTAGTAGCAGACATTTTTCCTTATGCTGCTTACATTCAATAGATGTGGATTTTTTAAGGAAAATTTTTG TTCTTGCAGACCAAGAAGGCATGAGGAGGCAACATTCTGATTTTTTGTTAGCAGCTGAGGTTATCTTCCAAGGTTTCACT TGCTCCTGATAAGCCATTGTTTTCTTTGTTTCACTTTTTTTTTCTTTTTCTCATAGTGATGTCAAGCATGTTCTCAGCTC TGCTCTTCTTGATTCTTTCTTTGAAATATTCTTCAATTCTATATCAATGCCATGAGATTTGATGAACCAGAAAACGTCAC CTTGAGATAAGAGCATCTACTCATTTGTTGGGATTCATCAATCTTATTAGCTTATATACTGTAAATTACTTTCATATATT GAATATAGATAGAAAATGACACATTTTTGTTATCAAATCAATACTTATAAGATTGTCAAATATTTA
CDS sequence (LotjaGi5g1v0154900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGGTTGTGGGGGACTGTGCAGAGTTCTTATGAGGAGTTCTGGAACTACTGAATTGAATACTTTCTACCCCATTCG ACCAGAATGCCAAGCTGACGCTCCAACCACTCGATTTAAACCAAGGTCTGGCAAAACTCTAAGTGCAAGAAGATGGCAAG CTTCATTTTCTGAAGATGGTCGCTTGGACATTGCAAAAGTTCTTAGACGAATCCAGCGGGGGGGTGTCCACCCTTCAATC AAAGGGGAAGTATGGGAGTTCTTGCTCGGTTGCTATGATCCTAACAGCACAGATGAAGAACGTAATGCTCTCAAGCAGCG TAGGAGGGGGCAATATGATATGTGGAAAGCTGAATGTCAAAAGTTTGTCCCAGTCATAGGTAGTGGAAAATTTATCACCA CACCCCTCACTAATGAAGATGGTCAGCCAATAAATAATTCTTTGGTAGGTGTCCGGTCTTCAGATAAGAAAGTTGTACAG TGGATGCAGTTATTACATCAAATTGGGTTGGATGTTGTTCGAACAGATCGAACACTTGTCTTTTATGAAAGTGAAGCTAA TCAAGCAAAACTTTGGGATCTTCTTGCAGTTTATGCTTATTTGGACAATGATATTGGTTACGTGCAAGGAATGAATGATA TTTGCTCACCTTTGGTTATGCTTATTGAGAATGAAGCAGACTGCTATTGGTGCTTTGAGCGTGCGATGCGAAGGCTGAGA GAGAACTTCAAGTGCGATGCCAGTTCAATGGGGGTGCAATCTCAGTTGGGTACACTCTCACAGATAATGAAAACAGTTGA TCCCAAACTTCACCATCATCTTGAGGATTTAGATGGTGGAGAATATCTCTTTGCATTTCGCATGCTGATGGTTCTTTTCC GAAGAGAGTTTTCTTTCGCTGATACATTATATCTTTGGGAGTTGATGTGGGCAATGGAATACAACCCAAACCTCTTTGCA AGATACGAGGATCCAGATCATGCCAAATCAAAAGGCCCTTCATCTGCACTAAATGACAAGGTTTTGAAGCAATATGGAAA ATTCGAGAGAAAAAACTTGAAGACTGGACAGACAGAGGAAACTGGTGCACTGGCTGTTTTTCTTGTTGCAAGTGTTCTTG AGATCAAGAATAGGCGGATTTTAAGCGAGGCAAAGGGTGTGGACGATGTTGTCCAGATCTTGGGTGACATAACCTCAAAT ATTGATGCTAAGAAAGTGCTTACTGAAGCATTGAAAATTCAGAAAAAATACCTGAGCAAGACCAAGAAGGCATGA
Protein sequence (LotjaGi5g1v0154900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGCGGLCRVLMRSSGTTELNTFYPIRPECQADAPTTRFKPRSGKTLSARRWQASFSEDGRLDIAKVLRRIQRGGVHPSI KGEVWEFLLGCYDPNSTDEERNALKQRRRGQYDMWKAECQKFVPVIGSGKFITTPLTNEDGQPINNSLVGVRSSDKKVVQ WMQLLHQIGLDVVRTDRTLVFYESEANQAKLWDLLAVYAYLDNDIGYVQGMNDICSPLVMLIENEADCYWCFERAMRRLR ENFKCDASSMGVQSQLGTLSQIMKTVDPKLHHHLEDLDGGEYLFAFRMLMVLFRREFSFADTLYLWELMWAMEYNPNLFA RYEDPDHAKSKGPSSALNDKVLKQYGKFERKNLKTGQTEETGALAVFLVASVLEIKNRRILSEAKGVDDVVQILGDITSN IDAKKVLTEALKIQKKYLSKTKKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 421 | 412 | 7.0E-186 | – | |
| PANTHER | 10 | 421 | 412 | 7.0E-186 | – | |
| SUPERFAMILY | 51 | 273 | 223 | 1.7E-49 | ||
| SMART | 72 | 336 | 265 | 8.8E-33 | ||
| ProSiteProfiles | 75 | 313 | 239 | 35.306 | ||
| Gene3D | 137 | 237 | 101 | 5.4E-15 | – | |
| Pfam | 151 | 311 | 161 | 4.9E-35 | ||
| SUPERFAMILY | 251 | 417 | 167 | 1.07E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0154900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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