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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0166900 |
Transcript ID | LotjaGi5g1v0166900.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | DNA-directed RNA polymerases I, II, and III subunit RPABC3; TAIR: AT3G59600.1 RNA polymerase Rpb8; Swiss-Prot: sp|Q9M1A8|RPB8B_ARATH DNA-directed RNA polymerases II, IV and V subunit 8B; TrEMBL-Plants: tr|I3T9W4|I3T9W4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0166900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42593207..42596084) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTCGGTTTATCCTTATTCAACATCATTTTTCAGAGCTTGCTGTTTTTAGTTGCATTCCCTGTTTATGCTACATGTCC TTTTTTTCTTCTGTATCTTGTGTTCCCATCTGCCTTTTTGTAGTCTCAATTTTTTAACATGAATATGATGAGTGGGATCA TTTGCTCCTATTAGTGACATGCAATATTGTTGTGTATTCTATTCTAATTCTAATCCTTTGGTTTTCTGCTCAAGTTACCC GCATTGAAGCAAGAAGTGAAAGATTTGACATGTTTATGCACCTAGACATCAATTCTGAGTTATATCCGTTAAAGGTGGGT CAGAAATTCGCTCTTTTACTGGTTCCAACACTGAATCCAGATGGTACCCCAGACACTGGCTACTATATTCCGGTAATTAG TTTATTCTTTTTCTAGTACAAGGAATGTTGAATTGATCCCCAATCCCTATTTCTGTACCATTGTGATACTGGAACATAGT CAAAGGTTAAGAGTATATCAATGATTACCCAGGTGTTTGAGTAACCTGAAACTCCTTCCAAATATTCAGCAAAATATCTG ATGACCCGTAGCTCTCTCCCGTTCTCTTTATAGCCAATCTCTGTCAATTCTGTTAGACTCTATCTTACAATCACTAACTC CCTGAAATAATAGAGACCAGCCTGCTGGGCTTACGTAACAGATTATTTACCTCTCTTCAATGTCTATCCTTCATGTGCAT TTTGTGGCTGAGTGCATAGGCTTGTGAAAACCCTGGGCGTTTGCCAATCTTTGTTTATTTTACATTCATCAAGATTTTTG TTCTGTGGTTGGGGGCTTTTGGTCTTCATGATTTTGGAATTCAAAACAGAAATATGGTTAATGTTAAATATGCATGTGAA TGTTGGGGGGGGGGGGTAAGAGTGGTTTAATTTTCTACCAAAGATTTCTTGGAAGGTGTGATCTAGTTGATATATGCATT ACTTGTTACTTAAAACAAGCATCTGTGGTCAAGTAAGTTTTAATGCGTCGATTTTGATGATCAGGTGACATTACATAGCT TAGTTTAAGCAGGTGGATGCCATGTTTTCTGGTTGTTCAATTTCAATACTTAGTTTGCTCTTTCAATTTTTTTATCTACT ATTTTGTGTCTTTTTTTTATTTGTATGATACCTGTTTTTTTGGGTTCACTCTAGGAAGTATGAAGTAGGTAAGTTCTGTG CATCTTTTGTACATAGCTTTTGTCAGTCCTCTGATCATTGTCATTACGAGATTCAAATTTTTAGACTCCAGTGCACAGCT TATGGTTGGGTTTGAAAATTTACTGGAAGATGTAACCAATGTTGGTCCAATCTTAGGTGCTGAAAATTTACTAGAAAATA TGGGTTGTGAACATGATGGAGCATATTGTTGTCTAAATATTTGGGCATTGCAACTATTTAAAAGCACTTGATTTCAGAAT CAGATACGTAAGGAGCTTAATTTTTGTTGGTTCATGTAAAATCTGTTTCAATTGCCTGGGGTCAAGCAACAACTACTATA TTAAATGAGTGGAGGGTGATCTAGTGTTGCAATCTTATGAATGCAGGTTTTCCATGTAGGATAGAAGACTAGATCTTGTA GCCCTTAAGAGATTCAGTAGAGAAGGATGGGTGAAAGAGTTGTGAACCCCAGAACCCAAAGAGGACTATTGTTCTGATTA ACTATGATAGAAACCAGCAATGGATCAACAAGAAAACTGATATTATTGAAGTAACCCCAGGTTATTTGAGAGAACCTGGG CTCTCCTTTTCCCATTTACAATCTGATCCAGAAGATGACTAATGCTCTCTCTAACTCTCTCATTTATAGTCTCATTCTCT AATTAACTCCCACAACCAACTAACCAACTATTAACTACTAACTACTAATGGATACGGGTACCTAACGATCTAGAAAAATA GAGAAAAAACAGATATGTTTTTAAATACTAGTCATACCCATTTTACAACCCTTAAATCCCTAAACATCCAAATTAAAAAC AATTCCTACCCCTTGCAATAAACCAAGACACAAGTACAATGTAAAATAGCATTACTACTGCACAGATGGCATAATAGTGT GAAAAAAGAATGTGTGGTAGTAACAGTAGTGTGAGATGTTAGCCCAATTTATAACTATAGCTCTCTTTGCCCTTCATTTT TCTTTTTATGTTTGCTATTTCCCTTTTCCCTGTTGTGTCAAATCGGTCAGGTCCAACCATGTGTAAATCAGACATCCTGG ATTTGCCTAATAGAATTCATCTGCTTGTTTCTTTCCCAGGGCAATCGGCAATCACTGGCTGATAATTTTGAATATGTTAT GTATGGCAAGCTCTACAAGATATCAGAAGGTTCAGGACGTGAAAAAGCGTATGTCCATCACTGGTTTTGACTTTTGAGTA GCAGAACACTGGAATTACTGTTTAGTTTCTGCATAGCATGCATGTCTTTTTGATTAACCATTTAGAGACTAGTTACTGGG GGCTGTGGACTTTTCTTCCTTGAGATATGAATTATCATGAGCATGAATGAATCATGTGTAGTTTGTATGGTACAGCGCAT GTTTCCAAGTAGCAGTGTTCACTAATTAAAGATGGGATTTGTCATGTTATTTAGTTCTGTAGTGCTAATCAGTGGATGTT ATTTCCAAGTAGCAGCTCTCCTCCTGTTAGAGAGGAATGTAGATCATTACATGATACAATTTAATGTCGTAGTATATTTT ATGGTTTCCCCCCTTACTGGTCTTGACTTTGGGCTTTGAATTGTAGGGAGTTAAATATTTCATTTGGTGGGCTTCTGATG ATGATGAAGGGAGATCACTCTCATTGCAACAAGTTTGAGCTTGATCAAAGGTTGTATCTTCTGATGAGGAAAGTCTGA
CDS sequence (LotjaGi5g1v0166900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTACTTACCCGCATTGAAGCAAGAAGTGAAAGATTTGACATGTTTATGCACCTAGACATCAATTCTGAGTTATATCC GTTAAAGGTGGGTCAGAAATTCGCTCTTTTACTGGTTCCAACACTGAATCCAGATGGTACCCCAGACACTGGCTACTATA TTCCGGGCAATCGGCAATCACTGGCTGATAATTTTGAATATGTTATGTATGGCAAGCTCTACAAGATATCAGAAGGTTCA GGACGTGAAAAAGCGGAGTTAAATATTTCATTTGGTGGGCTTCTGATGATGATGAAGGGAGATCACTCTCATTGCAACAA GTTTGAGCTTGATCAAAGGTTGTATCTTCTGATGAGGAAAGTCTGA
Protein sequence (LotjaGi5g1v0166900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPTLNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKISEGS GREKAELNISFGGLLMMMKGDHSHCNKFELDQRLYLLMRKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 2 | 121 | 120 | 2.0E-42 | – | |
PIRSF | 2 | 121 | 120 | 5.2E-38 | ||
Pfam | 4 | 120 | 117 | 1.9E-40 | ||
SMART | 4 | 120 | 117 | 1.5E-42 | ||
PANTHER | 4 | 121 | 118 | 6.8E-49 | ||
SUPERFAMILY | 4 | 120 | 117 | 1.08E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. |
Expression pattern of LotjaGi5g1v0166900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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