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IPR005570

Source: InterPro

Description

IPR005570 is a DNA-directed RNA polymerases I, II, and III subunit RPABC3.

<p>This family includes DNA-directed RNA polymerases I, II, and III subunit RPABC3 (also known as Rpb8), an essential subunit common to the three RNA polymerases, pol I, II and III [[cite:PUB00076664], [cite:PUB00040518]]. Rpb8 interacts with the largest subunit Rpb1, and with Rpb3 and Rpb11, two smaller subunits.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of

Associated Lotus transcripts 11

Transcript Name Description Predicted domains Domain count
Lj0g3v0270299.1
– PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like [Cicer arietinum] gi|502168862|ref|XP_004514482.1|
Domains
8
Lj0g3v0270299.2
– PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like [Cicer arietinum] gi|502168862|ref|XP_004514482.1|
Domains
8
Lj5g3v0975900.1
– PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like [Cicer arietinum] gi|502168862|ref|XP_004514482.1|
Domains
8
Lj5g3v0975900.2
– PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like [Cicer arietinum] gi|502168862|ref|XP_004514482.1|
Domains
8
LotjaGi5g1v0026400.1
– DNA-directed RNA polymerases I, II, and III subunit rpabc3; TAIR: AT3G59600.1 RNA polymerase Rpb8; Swiss-Prot: sp|Q9M1A8|RPB8B_ARATH DNA-directed RNA polymerases II, IV and V subunit 8B; TrEMBL-Plants: tr|I3T3I9|I3T3I9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0026400
Domains
9
LotjaGi5g1v0026400.2
– DNA-directed RNA polymerases I, II, and III subunit rpabc3; TAIR: AT3G59600.1 RNA polymerase Rpb8; Swiss-Prot: sp|Q9M1A8|RPB8B_ARATH DNA-directed RNA polymerases II, IV and V subunit 8B; TrEMBL-Plants: tr|I3T3I9|I3T3I9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0026400
Domains
9
LotjaGi5g1v0109300.1
– DNA-directed RNA polymerases I, II, and III subunit RPABC3; TAIR: AT3G59600.1 RNA polymerase Rpb8; Swiss-Prot: sp|Q9M1A8|RPB8B_ARATH DNA-directed RNA polymerases II, IV and V subunit 8B; TrEMBL-Plants: tr|I3T9W4|I3T9W4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0109300
Domains
8
LotjaGi5g1v0109300.2
– DNA-directed RNA polymerases I, II, and III subunit RPABC3; TAIR: AT3G59600.1 RNA polymerase Rpb8; Swiss-Prot: sp|Q9M1A8|RPB8B_ARATH DNA-directed RNA polymerases II, IV and V subunit 8B; TrEMBL-Plants: tr|I3T9W4|I3T9W4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0109300
Domains
8
LotjaGi5g1v0166900.1
– DNA-directed RNA polymerases I, II, and III subunit RPABC3; TAIR: AT3G59600.1 RNA polymerase Rpb8; Swiss-Prot: sp|Q9M1A8|RPB8B_ARATH DNA-directed RNA polymerases II, IV and V subunit 8B; TrEMBL-Plants: tr|I3T9W4|I3T9W4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0166900
Domains
8
LotjaGi5g1v0166900.2
– DNA-directed RNA polymerases I, II, and III subunit RPABC3; TAIR: AT3G59600.1 RNA polymerase Rpb8; Swiss-Prot: sp|Q9M1A8|RPB8B_ARATH DNA-directed RNA polymerases II, IV and V subunit 8B; TrEMBL-Plants: tr|I3T9W4|I3T9W4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0166900
Domains
8
LotjaGi5g1v0166900.3
– DNA-directed RNA polymerases I, II, and III subunit RPABC3; TAIR: AT3G59600.1 RNA polymerase Rpb8; Swiss-Prot: sp|Q9M1A8|RPB8B_ARATH DNA-directed RNA polymerases II, IV and V subunit 8B; TrEMBL-Plants: tr|I3T9W4|I3T9W4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0166900
Domains
8

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
SSF50249 SUPERFAMILY 1 9.09