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LotjaGi5g1v0178500.1

Overview

Field Value
Gene ID LotjaGi5g1v0178500
Transcript ID LotjaGi5g1v0178500.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Outer envelope protein 80, chloroplastic; TAIR: AT3G44160.1 Outer membrane OMP85 family protein; Swiss-Prot: sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic; TrEMBL-Plants: tr|A0A072VWU6|A0A072VWU6_MEDTR Outer membrane OMP85 family protein; Found in the gene: LotjaGi5g1v0178500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:45546483..45549781) extracted from Lotus japonicus Gifu genome v1.2.

ACAACATTTTGAGTGGAACTGCTTCGCCCTTACCAACACCCTTGATTGCCATCAGTAAGCACAATAGCAGTTGCCTCCAT AGGATTTAACCCATATTATTTATTCATAATGATCATGATATATAGATTTCTAACAGGGAATTCCTAGCCTGGTTGTGTTG ATTTATTGTTCCATCTCCTTTCTTATAAGAAAAGAATAAAAGAAAGATTCAAAGTTGCTTCTTTCCTCGTTTAGGCATAG ATGTAAGAGCTAAGAGGAAGCAATAAGGTGACAAACTTCTCATCTATATGTCAAATAAAGAATATCAAAACTAAAAAGCT TGGAATTTTCACCTTTTCCGACTTATACAACACTTTTTTCCGCGTCTCTTCCTCTACCTTCATCACATCCCATTCATTCA TGTTTTATGCAGTTCTTGTATGCAGACAAAGTGTTTGTCATAATGGGAGCTCACAAAAGCATCCATGCTGGCAAAGGTTC ATATCTTCCCTCCATTATAAATAATAAAACTAAACCTTCAATTTATCTAAATAGATGTGATTTTATTTTTTTCCATTAAG ACTTGGTTGACTTCAAATATCATTACCAGTTATTAACTCTCAATTTTGTGCATGGCAGCAAAGCTTGACATTGGAGTTAA TTTCATTCACAATCTCTGTAGTTCTTATGTGCTCTCTCCTCCCAGGTTTCTTACTATTCCTTGCTGATATTTGATAATGT TTTGGTTGAGTTTCTCTCTGATGATGTTTTTCATGAACTCCAACAGGCTATCTAGTAGTAATCCATTTTCTCTGGCTGCT GGCAGGTACAGCATTTTTTTTGTTTGGTTTGGTTTCTAGTGACATCAAATTGGGTTCTTGTACAGAAATGTTGACATGTA AATGAATAATAAAGTACTTACTTATTTCAATTTTGTTCATTGCAGCTTTTGCTTTAAGCATCCTGAGTTATTTAGTAAAA GTGATCTGTTTGATGTATCATGGCACAAGGGGCTGCATGATTCAAATCTCTTGATCTCTTACAGGTACCCTAGACCTCTA TGTCTTGGCCAGAAGTGTCTTATCCTTCAGGTTTGTGTTACATTTTGGCTCAAACTTCTTTGTAAAATTCATATTACAAA GGGTGATAGTATAAGCATGGTAATGAAATTATATTCTCCCTTCACAGCATTCAGCTTCACCTGAGATTAGGATCCATGGA ATTCCCATGAACAATTTCTCCCATTCTACAAGTCGAGGTGTCAGGTTGTCAAAATTATCAATCGGAATGGATATAAATGA GCCGTCAACCTCTAATTGGAGCAGCATAACTGGTGTATATTTTAAGGTTGGTGGAGTTAATGTTGGTTTCATTGATTCCT ACCATGCATATCATTGTGCATATGAATTCAAGCTCCACTACCTTCCTCTAATAATAGAAGTTATTGTTCATCTTTGTTGT GTTGAGATATAATTACTCAGTTCGTTGACACAATCAATTATGCAGCATTTTCATTTTAGAAATGATGGTGGCCGCTCTAT AAGCAGAGATCTAGATGGTTTTCCAGTGACATCCAGGTTGATGAAATTAATTAAGTCCTGAGATAGATAATAACCTGTTT GAATAATTGTTACTAATCATGTTCTTTGAATTTTCTATGTAGTGGAGATTCATTTGACAACATGTTAGTGATTAATCAAG AATCTCGATTTGAAGATGCAAACGATCATGGATTTAGTCACGTAAGTAATCTTACTTGGTAACAAATCACCATTATATAA GTCATATTATGTTTTATTAACTTCAAGTTAGTGTATATTCAGTTCAGTGTACAAATGCAACAAGGGATTCCACTTGGACC AAACTTGCTAACCTTCAACCGGTTTAAGTTTTTTGCTTCAAAAGGAGTCAAACTTGGACCAGCACTTTTCACCTCCTGGT GAGTTTAGTTATACTTTCCATTAAGAAACAAAAGGGTAAGAAATGGATGCAATTGAGTGAACTATATATACTACCACTTT CCCTATCTACTTTAGAAACAGCTAATCCATTTTCCCCCTTTTATTACATGTACTATATCAGTTTTTGAATCTTATCTTGC AGGTTGAGTGGTGGCTCAATTGTAGGACCCATTGCTCCACATCAAGCATTTGCCATCGGCGGTCCGAGTAGTGTGCGAGG CTATGGTGAAGGTGCAGTTGGTTCTGGACAATCATGTTTGGTGTCTAAAAGTGAATTAGCAGTTCCATTGGTATAATGTT CATTACTTTTCAAGTGTTACAGAGAATGTTATACCAATTGTTTGTCCTACTTTCTTTTCATTTTTGTTCTCTTAGCTGTG AAAATTATACATACACTTTTACCAAGATTCTAACTCATTGGTAATTACCTTCCAGATTGCTTAATGTCAAAACTTGTCTC CTGATCACTTTAGCAAGGTTATATCAGTTTCATAATCTAGGGAAAAGCTAGCAAACTTTGATAAAATATCTTTGCCCCAA GTACACAACACAATATCTAATGCTCTAAATGAAATTCCAAGTACTTAGATCTTTATGGCTATTGACCTATGATACTGATA AAAAATCCCCATATGTATATATCCACTATTACTCATTTCATAACCATATTTAATATTGTCATTTCTACTAATCATTGATG CTGATCACTTTTCTTACACTGTTTGCAGAACAAGAAGCTGACAGGTGTTATTTTTTTGGACTGTGGATCTGACTTGAGAA GTAGTCATAAGGTTCCTGGTGAGTTTCATTCCTTAGTAATCAAGTTACAATTAAGTTTATTAGCTAAGACCATTATATAA GTACTTATATCTTAATAAGAAGTGTGTAAATTAATTCTATCTTTTTTTGCCCCTTCACCTGTGATTTGCTCTAACATTTT TAATCATCATATGAGAATTGCAGGAAATCCAGGACTGAGGCAGGGTAAACCAGGATCCGGGTATGGAATCGGATATGGAG TTCGCTTCAAAACTAATTCGTGTCAAATAAACGTTGATTATGCCATCAATGCCTTTCACCAAAGAACTGTCTATTTTGGA ATTAGCAATCTGGTTTTATGAACACTGACTTGGCCTAACTTTGCCAAAATATGCAGGCTCTTCTTCGTTCTTTACAAAAG CATGATGTATAATTGTATATATACTCTCATTATTTGCAAAACATTGTTGTTAATGTGAATTTTGAGAAAATTTCTCGAAC GAAATGTTCAAGAATTTGGTTAAGTCCAAAAACATGCTGAAGAGAATTTAGCCATAGTAGCTAAAAGAGCTCATTTTAAC TAAAAAGTTGAGGTTCTAG 

CDS sequence (LotjaGi5g1v0178500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGTTCTTGTATGCAGACAAAGTGTTTGTCATAATGGGAGCTCACAAAAGCATCCATGCTGGCAAAGCAAAGCTTGA CATTGGAGTTAATTTCATTCACAATCTCTGTAGTTCTTATGTGCTCTCTCCTCCCAGGCTATCTAGTAGTAATCCATTTT CTCTGGCTGCTGGCAGCTTTTGCTTTAAGCATCCTGAGTTATTTAGTAAAAGTGATCTGTTTGATGTATCATGGCACAAG GGGCTGCATGATTCAAATCTCTTGATCTCTTACAGGTACCCTAGACCTCTATGTCTTGGCCAGAAGTGTCTTATCCTTCA GCATTCAGCTTCACCTGAGATTAGGATCCATGGAATTCCCATGAACAATTTCTCCCATTCTACAAGTCGAGGTGTCAGGT TGTCAAAATTATCAATCGGAATGGATATAAATGAGCCGTCAACCTCTAATTGGAGCAGCATAACTGGTGTATATTTTAAG CATTTTCATTTTAGAAATGATGGTGGCCGCTCTATAAGCAGAGATCTAGATGGTTTTCCAGTGACATCCAGTGGAGATTC ATTTGACAACATGTTAGTGATTAATCAAGAATCTCGATTTGAAGATGCAAACGATCATGGATTTAGTCACTTCAGTGTAC AAATGCAACAAGGGATTCCACTTGGACCAAACTTGCTAACCTTCAACCGGTTTAAGTTTTTTGCTTCAAAAGGAGTCAAA CTTGGACCAGCACTTTTCACCTCCTGGTTGAGTGGTGGCTCAATTGTAGGACCCATTGCTCCACATCAAGCATTTGCCAT CGGCGGTCCGAGTAGTGTGCGAGGCTATGGTGAAGGTGCAGTTGGTTCTGGACAATCATGTTTGGTGTCTAAAAGTGAAT TAGCAGTTCCATTGAACAAGAAGCTGACAGGTGTTATTTTTTTGGACTGTGGATCTGACTTGAGAAGTAGTCATAAGGTT CCTGGAAATCCAGGACTGAGGCAGGGTAAACCAGGATCCGGGTATGGAATCGGATATGGAGTTCGCTTCAAAACTAATTC GTGTCAAATAAACGTTGATTATGCCATCAATGCCTTTCACCAAAGAACTGTCTATTTTGGAATTAGCAATCTGGTTTTAT GA 

Protein sequence (LotjaGi5g1v0178500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQFLYADKVFVIMGAHKSIHAGKAKLDIGVNFIHNLCSSYVLSPPRLSSSNPFSLAAGSFCFKHPELFSKSDLFDVSWHK GLHDSNLLISYRYPRPLCLGQKCLILQHSASPEIRIHGIPMNNFSHSTSRGVRLSKLSIGMDINEPSTSNWSSITGVYFK HFHFRNDGGRSISRDLDGFPVTSSGDSFDNMLVINQESRFEDANDHGFSHFSVQMQQGIPLGPNLLTFNRFKFFASKGVK LGPALFTSWLSGGSIVGPIAPHQAFAIGGPSSVRGYGEGAVGSGQSCLVSKSELAVPLNKKLTGVIFLDCGSDLRSSHKV PGNPGLRQGKPGSGYGIGYGVRFKTNSCQINVDYAINAFHQRTVYFGISNLVL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 23 372 350 8.8E-193
PANTHER 23 372 350 8.8E-193
Gene3D 67 370 304 5.2E-14
Pfam 213 364 152 2.8E-14

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Outer membrane The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0178500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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