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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR039910
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 14 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.408s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0007200_LC.1
n.a. Protein TOC75-3, chloroplastic; TAIR: AT3G46740.1 translocon at the outer envelope membrane of chloroplasts 75-III; Swiss-Prot: sp|Q43715|TOC75_PEA Protein TOC75, chloroplastic; TrEMBL-Plants: tr|A0A151SUP1|A0A151SUP1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0007200_LC LjG1.1_chr1 1025703 1028893 -
2 domain predictions
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LotjaGi1g1v0007200_LC.2
n.a. Chloroplastic outer envelope membrane protein, putative, expressed; TAIR: AT3G46740.1 translocon at the outer envelope membrane of chloroplasts 75-III; Swiss-Prot: sp|Q43715|TOC75_PEA Protein TOC75, chloroplastic; TrEMBL-Plants: tr|A0A151SUP1|A0A151SUP1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0007200_LC LjG1.1_chr1 1025731 1027092 -
2 domain predictions
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LotjaGi1g1v0007200_LC.3
n.a. Protein TOC75-3, chloroplastic; TAIR: AT3G46740.1 translocon at the outer envelope membrane of chloroplasts 75-III; Swiss-Prot: sp|Q43715|TOC75_PEA Protein TOC75, chloroplastic; TrEMBL-Plants: tr|A0A151SUP1|A0A151SUP1_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0007200_LC LjG1.1_chr1 1025731 1028791 -
2 domain predictions
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LotjaGi3g1v0183800.1
n.a. Outer envelope protein 80, chloroplastic; TAIR: AT3G44160.1 Outer membrane OMP85 family protein; Swiss-Prot: sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic; TrEMBL-Plants: tr|I3S6C8|I3S6C8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0183800 LjG1.1_chr3 25740156 25750800 +
2 domain predictions
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LotjaGi3g1v0183800.2
n.a. Outer envelope protein 80, chloroplastic; TAIR: AT3G44160.1 Outer membrane OMP85 family protein; Swiss-Prot: sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic; TrEMBL-Plants: tr|I3S6C8|I3S6C8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0183800 LjG1.1_chr3 25746294 25750044 +
2 domain predictions
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LotjaGi3g1v0183800.3
n.a. Outer envelope protein 80, chloroplastic; TAIR: AT3G44160.1 Outer membrane OMP85 family protein; Swiss-Prot: sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic; TrEMBL-Plants: tr|I3S6C8|I3S6C8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0183800 LjG1.1_chr3 25746430 25750044 +
2 domain predictions
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LotjaGi3g1v0183800.4
n.a. Outer envelope protein 80, chloroplastic; TAIR: AT3G44160.1 Outer membrane OMP85 family protein; Swiss-Prot: sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic; TrEMBL-Plants: tr|I3S6C8|I3S6C8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0183800 LjG1.1_chr3 25746439 25750044 +
2 domain predictions
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LotjaGi3g1v0285600.1
n.a. Chloroplastic outer envelope membrane protein, putative, expressed; TAIR: AT3G46740.1 translocon at the outer envelope membrane of chloroplasts 75-III; Swiss-Prot: sp|Q43715|TOC75_PEA Protein TOC75, chloroplastic; TrEMBL-Plants: tr|A0A0L9UN31|A0A0L9UN31_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0285600 LjG1.1_chr3 57735883 57743248 +
2 domain predictions
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LotjaGi3g1v0288400.1
n.a. Outer envelope protein 80, chloroplastic; TAIR: AT5G19620.1 outer envelope protein of 80 kDa; Swiss-Prot: sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic; TrEMBL-Plants: tr|I1M513|I1M513_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0288400 LjG1.1_chr3 58499183 58507562 +
2 domain predictions
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LotjaGi3g1v0288400.2
n.a. Outer envelope protein 80, chloroplastic; TAIR: AT5G19620.1 outer envelope protein of 80 kDa; Swiss-Prot: sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic; TrEMBL-Plants: tr|I3SNW6|I3SNW6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0288400 LjG1.1_chr3 58499421 58507099 +
2 domain predictions
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LotjaGi3g1v0288400.3
n.a. Outer envelope protein 80, chloroplastic; TAIR: AT5G19620.1 outer envelope protein of 80 kDa; Swiss-Prot: sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic; TrEMBL-Plants: tr|I3SNW6|I3SNW6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0288400 LjG1.1_chr3 58499434 58507099 +
2 domain predictions
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LotjaGi5g1v0178500.1
n.a. Outer envelope protein 80, chloroplastic; TAIR: AT3G44160.1 Outer membrane OMP85 family protein; Swiss-Prot: sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic; TrEMBL-Plants: tr|A0A072VWU6|A0A072VWU6_MEDTR Outer membrane OMP85 family protein; Found in the gene: LotjaGi5g1v0178500 LjG1.1_chr5 45546483 45549781 -
2 domain predictions
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LotjaGi5g1v0178500.2
n.a. Outer envelope protein 80, chloroplastic; TAIR: AT3G44160.1 Outer membrane OMP85 family protein; Swiss-Prot: sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic; TrEMBL-Plants: tr|A0A072VWU6|A0A072VWU6_MEDTR Outer membrane OMP85 family protein; Found in the gene: LotjaGi5g1v0178500 LjG1.1_chr5 45546483 45549781 -
2 domain predictions
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LotjaGi6g1v0078300.1
n.a. Sorting and assembly machinery component 50 like; TAIR: AT5G05520.1 Outer membrane OMP85 family protein; Swiss-Prot: sp|Q8BGH2|SAM50_MOUSE Sorting and assembly machinery component 50 homolog; TrEMBL-Plants: tr|A0A1J7GAN6|A0A1J7GAN6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0078300 LjG1.1_chr6 14793746 14799880 -
2 domain predictions
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